DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 34131 CG8086 cacgUUUGCUAAA--AGUUGUGu || : |||| ||||||| auuaAAUUCAUUUGGUCAACACa 2 18 15 37 [dm3:2L:8244549-8244571:-] 0.4368 152 7 -14.16 -1.2206 MIMAT0005025 dme-miR-1012 34131 CG8086 gauacccCUUUUAG---AAACUGAUu ||| | | |||||||| acgagaaGAACACCGAGUUUGACUAc 2 17 72 97 [dm3:2L:8244409-8244434:-] 0.5450 147 7 -8.95 -0.4923 MIMAT0012214 dme-miR-2500* 34131 CG8086 ccauaacauauacacacAAGGAAUg ||||||| ggucuucgaugaacagcUUCCUUAc 2 9 186 210 [dm3:2L:8244296-8244320:-] 0.5450 140 7 -12.29 -0.3189 MIMAT0012214 dme-miR-2500* 34131 CG8086 ccauaacauauacacacAAGGAAUg ||||||| ggucuucgaugaacagcUUCCUUAc 2 9 68 92 [dm3:2L:8244296-8244320:-] 0.5450 140 7 -12.29 -0.3393 MIMAT0000112 dme-miR-7 34131 CG8086 ugUUGUUUUAGUGAUC-AGAAGGu |:| :|| | || |||||| gaAGCUGAAGCUGAAGCUCUUCCa 2 22 134 157 [dm3:2L:8244349-8244372:-] 0.5450 121 6 -14.08 -0.6442 MIMAT0000112 dme-miR-7 34131 CG8086 ugUUGUUUUAGUGAUC-AGAAGGu |:| :|| | || |||||| gaAGCUGAAGCUGAAGCUCUUCCa 2 22 16 39 [dm3:2L:8244349-8244372:-] 0.5450 121 6 -14.08 -0.6547 MIMAT0000113 dme-miR-8 34131 CG8086 cuguagaaaugGACUGUCAUAAu || ||||||| gggaucaagcaCUCCCAGUAUUu 2 13 38 60 [dm3:2L:8244446-8244468:-] 0.7072 144 7 -12.41 -0.2577 MIMAT0000319 dme-miR-263a 34131 CG8086 caCUUAAGAAGGUCACGGUAAUUg |||| : |:: ||||||||| --GAAUGUAUUU--UGCCAUUAAa 2 23 1 20 [dm3:2L:8244566-8244585:-] 0.4368 159 7 -12.61 -0.9481 MIMAT0000346 dme-miR-282 34131 CG8086 uguCUG-UUUCGGA----UCAUCUCCGAUCUAa ||| | |||:| :| | ||||||| uuuGACUACAGCUUUUCCGGAAUCUGCUAGAUg 2 26 89 121 [dm3:2L:8244385-8244417:-] 0.5450 147 7 -15.77 -0.5149 MIMAT0000347 dme-miR-283 34131 CG8086 ucUUA-AUGGUCGACUAUAAau :|| ||: | |||||| cuGAUAUAUAAAGAGAUAUUac 3 20 319 340 [dm3:2L:8244166-8244187:-] 0.5450 126 0 -5.78 -0.3363 MIMAT0000347 dme-miR-283 34131 CG8086 ucUUA-AUGGUCGACUAUAAau :|| ||: | |||||| cuGAUAUAUAAAGAGAUAUUac 3 20 201 222 [dm3:2L:8244166-8244187:-] 0.5450 126 0 -5.78 -0.3563 MIMAT0000401 dme-miR-309 34131 CG8086 auccUGUUUGAAAUGGGU-CACg ::|||| | |||| ||| gaauGUAAACCUCUCCCAUGUGc 2 19 1 23 [dm3:2L:8244483-8244501,8244582-8244585:-] 0.5720 122 0 -16.53 -0.5457 MIMAT0000410 dme-miR-318 34131 CG8086 acUCUAUUUGUUUCGGGU-CACu | :||||| |||| ||| gaAUGUAAACCUCUCCCAUGUGc 2 21 1 23 [dm3:2L:8244483-8244501,8244582-8244585:-] 0.5720 120 0 -13.22 -0.5422 MIMAT0000413 dme-miR-iab-4-3p 34131 CG8086 caaUGCAUAUGACUUCCAUAUGgc |:|| ||| | |||||| ggaAUGU-UAC-AAUUGUAUACac 3 22 180 201 [dm3:2L:8244187-8244208:-] 0.5450 129 0 -10.48 -0.1040 MIMAT0005476 dme-miR-962 34131 CG8086 cugucgUAGUUAAAGAGAUGGAAUa | ||: ||| :||||||| ucgaugAACAGCUUCCUUACCUUAa 2 20 191 215 [dm3:2L:8244291-8244315:-] 0.5450 163 7 -16.34 -0.9571 MIMAT0005476 dme-miR-962 34131 CG8086 cugucgUAGUUAAAGAGAUGGAAUa | ||: ||| :||||||| ucgaugAACAGCUUCCUUACCUUAa 2 20 73 97 [dm3:2L:8244291-8244315:-] 0.5450 163 7 -16.34 -0.9800 MIMAT0005513 dme-miR-994 34131 CG8086 uagugccgaUGAUAAAGGAAUc || : ||||||| cuucgaugaACAGCUUCCUUAc 2 14 189 210 [dm3:2L:8244296-8244317:-] 0.5450 145 7 -8.28 -0.3189 MIMAT0005513 dme-miR-994 34131 CG8086 uagugccgaUGAUAAAGGAAUc || : ||||||| cuucgaugaACAGCUUCCUUAc 2 14 71 92 [dm3:2L:8244296-8244317:-] 0.5450 145 7 -8.28 -0.3393 MIMAT0005024 dme-miR-1011 34131 CG8086 gacgcUCGCUAAACUUGGUUAUu || ||| | ||:|||| uauaaAGAGAUAU-UACUAAUAu 2 19 325 346 [dm3:2L:8244160-8244181:-] 0.5450 136 0 -7.48 -0.2172 MIMAT0005024 dme-miR-1011 34131 CG8086 gacgcUCGCUAAACUUGGUUAUu || ||| | ||:|||| uauaaAGAGAUAU-UACUAAUAu 2 19 207 228 [dm3:2L:8244160-8244181:-] 0.5450 136 0 -7.48 -0.2317

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8086 RAID00427861 dme-miR-962-5p miRNA MIMAT0005476 CG8086 mRNA 34131 Prediction 0.2202 CG8086 RAID01142789 dme-miR-5-5p miRNA MIMAT0000110 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID01695666 dme-miR-7-5p miRNA MIMAT0000112 CG8086 mRNA 34131 Prediction 0.2202 CG8086 RAID02216191 dme-miR-iab-4-3p miRNA MIMAT0000413 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID02461013 dme-miR-263a-5p miRNA MIMAT0000319 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID02519480 dme-miR-8-3p miRNA MIMAT0000113 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID02658344 dme-miR-309-3p miRNA MIMAT0000401 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID02803550 dme-miR-318-3p miRNA MIMAT0000410 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID02969185 dme-miR-994-5p miRNA MIMAT0005513 CG8086 mRNA 34131 Prediction 0.2202 CG8086 RAID03350005 dme-miR-282-5p miRNA MIMAT0000346 CG8086 mRNA 34131 Prediction 0.1828 CG8086 RAID03622629 dme-miR-283-5p miRNA MIMAT0000347 CG8086 mRNA 34131 Prediction 0.2202 CG8086 RAID03819081 dme-miR-1011-3p miRNA MIMAT0005024 CG8086 mRNA 34131 Prediction 0.1828