DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 34608 CG6686 uggucauggacuacaUUAUGAGu ||||||: cuaauccgcguacuaAAUACUUa 2 9 69 91 [dm3:2L:11984416-11984438:-] 0.5894 124 0 -13.28 -0.1412 MIMAT0000117 dme-miR-12 34608 CG6686 uggucauggacuacaUUAUGAGu ||||||: cuaauccgcguacuaAAUACUUa 2 9 69 91 [dm3:2L:11984416-11984438:-] 0.5894 124 0 -13.28 -0.1411 MIMAT0000343 dme-miR-280 34608 CG6686 auaGUAAAGUAUACGUUGC---AUUUAUGu || ||| || | :|| ||||||| agaCACUUCCUAAUCCGCGUACUAAAUACu 2 25 60 89 [dm3:2L:11984418-11984447:-] 0.5894 159 7 -9.84 -0.9492 MIMAT0000343 dme-miR-280 34608 CG6686 auaguaAAGUAUACGUUGCAUUUAUGu ||||||| : |: |||||| auuuucUUCAUAU-UUAUUCAAAUACa 2 22 132 157 [dm3:2L:11984350-11984375:-] 0.5597 135 6 -10.99 -0.2864 MIMAT0000343 dme-miR-280 34608 CG6686 auaGUAAAGUAUACGUUGC---AUUUAUGu || ||| || | :|| ||||||| agaCACUUCCUAAUCCGCGUACUAAAUACu 2 25 60 89 [dm3:2L:11984418-11984447:-] 0.5894 159 7 -9.84 -0.9490 MIMAT0000343 dme-miR-280 34608 CG6686 auaguaAAGUAUACGUUGCAUUUAUGu ||||||| : |: |||||| auuuucUUCAUAU-UUAUUCAAAUACa 2 22 132 157 [dm3:2L:11984350-11984375:-] 0.5597 135 6 -10.99 -0.2867 MIMAT0000364 dme-miR-289 34608 CG6686 ucagcguccgaggugaauuUAUAAAu |||||| caaauauguaauuuucuucAUAUUUa 2 8 122 147 [dm3:2L:11984360-11984385:-] 0.5975 120 6 -8.06 -0.5624 MIMAT0000364 dme-miR-289 34608 CG6686 ucagcguccgaggugaauuUAUAAAu |||||| caaauauguaauuuucuucAUAUUUa 2 8 122 147 [dm3:2L:11984360-11984385:-] 0.5975 120 6 -8.06 -0.5613 MIMAT0011784 dme-miR-2279* 34608 CG6686 uuaaagugugugucUAUAAAUu ||||||| auguaauuuucuucAUAUUUAu 2 9 127 148 [dm3:2L:11984359-11984380:-] 0.5975 140 7 -3.92 -1.1160 MIMAT0011784 dme-miR-2279* 34608 CG6686 uuaaagugugugucUAUAAAUu ||||||| auguaauuuucuucAUAUUUAu 2 9 127 148 [dm3:2L:11984359-11984380:-] 0.5975 140 7 -3.92 -1.1158 MIMAT0011786 dme-miR-2280 34608 CG6686 uaUAAA-AUAACGGUUCGAUUcu |||| | || ||||||| ggAUUUAUCUUAAAAAGCUAAuc 3 21 162 184 [dm3:2L:11984323-11984345:-] 0.5219 139 0 -6.67 -0.1370 MIMAT0011791 dme-miR-2283 34608 CG6686 uaACAGCAUAAGUACUAUAAAag ||| | ||| | |||||| uaUGUAAUUUUCUUCAUAUUUau 3 22 126 148 [dm3:2L:11984359-11984381:-] 0.5975 145 0 -5.19 -0.1042 MIMAT0011791 dme-miR-2283 34608 CG6686 uaACAGCAUAAGUACUAUAAAag ||| | ||| | |||||| uaUGUAAUUUUCUUCAUAUUUau 3 22 126 148 [dm3:2L:11984359-11984381:-] 0.5975 145 0 -5.19 -0.1041 MIMAT0000120 dme-miR-14 34608 CG6686 aucCUCUCUCUUUUUCUGAcu |:| | ::||||||| gaaGGGCGCAGGAAAGACUag 3 19 2 22 [dm3:2L:11984485-11984505:-] 0.5894 134 0 -14.90 -0.1140 MIMAT0000120 dme-miR-14 34608 CG6686 aucCUCUCUCUUUUUCUGAcu |:| | ::||||||| gaaGGGCGCAGGAAAGACUag 3 19 2 22 [dm3:2L:11984485-11984505:-] 0.5894 134 0 -14.90 -0.1354 MIMAT0000334 dme-miR-92a 34608 CG6686 uauccggcccuGUUCACGUUAc ||| |||||| auauacacaacCAAAUGCAAUa 2 12 39 60 [dm3:2L:11984447-11984468:-] 0.5894 123 6 -6.59 -0.1490 MIMAT0000334 dme-miR-92a 34608 CG6686 uauccggcccuGUUCACGUUAc ||| |||||| auauacacaacCAAAUGCAAUa 2 12 39 60 [dm3:2L:11984447-11984468:-] 0.5894 123 6 -6.59 -0.1489 MIMAT0000347 dme-miR-283 34608 CG6686 ucUUAAUGGUCGACUAUAAAu |||| :| :| |||||| guAAUUUUC--UUCAUAUUUa 2 20 129 147 [dm3:2L:11984360-11984378:-] 0.5975 124 6 -3.89 -0.5552 MIMAT0000347 dme-miR-283 34608 CG6686 ucUUAAUGGUCGACUAUAAAu |||| :| :| |||||| guAAUUUUC--UUCAUAUUUa 2 20 129 147 [dm3:2L:11984360-11984378:-] 0.5975 124 6 -3.89 -0.5541 MIMAT0000358 dme-miR-92b 34608 CG6686 cguccggcccugaucACGUUAa |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -4.59 -0.1490 MIMAT0000358 dme-miR-92b 34608 CG6686 cguccggcccugaucACGUUAa |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -4.59 -0.1489 MIMAT0000402 dme-miR-310 34608 CG6686 uuuccggcccuucacACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.80 -0.1490 MIMAT0000402 dme-miR-310 34608 CG6686 uuuccggcccuucacACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.80 -0.1489 MIMAT0000403 dme-miR-311 34608 CG6686 aguccggccacuuacACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.81 -0.1504 MIMAT0000403 dme-miR-311 34608 CG6686 aguccggccacuuacACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.81 -0.1503 MIMAT0000404 dme-miR-312 34608 CG6686 aguccggcagaGUUCACGUUAu ||| |||||| auauacacaacCAAAUGCAAUa 2 12 39 60 [dm3:2L:11984447-11984468:-] 0.5894 123 6 -9.92 -0.1475 MIMAT0000404 dme-miR-312 34608 CG6686 aguccggcagaGUUCACGUUAu ||| |||||| auauacacaacCAAAUGCAAUa 2 12 39 60 [dm3:2L:11984447-11984468:-] 0.5894 123 6 -9.92 -0.1474 MIMAT0000405 dme-miR-313 34608 CG6686 agcccgacacuuuucACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.80 -0.1504 MIMAT0000405 dme-miR-313 34608 CG6686 agcccgacacuuuucACGUUAu |||||| auauacacaaccaaaUGCAAUa 2 8 39 60 [dm3:2L:11984447-11984468:-] 0.5894 120 6 -6.80 -0.1503 MIMAT0005471 dme-miR-958 34608 CG6686 uuucaucuuaucuucUUAGAGu |||||| uuaucuuaaaaagcuAAUCUCa 2 8 166 187 [dm3:2L:11984320-11984341:-] 0.5219 120 6 -7.98 -0.1568 MIMAT0005471 dme-miR-958 34608 CG6686 uuucaucuuaucuucUUAGAGu |||||| uuaucuuaaaaagcuAAUCUCa 2 8 166 187 [dm3:2L:11984320-11984341:-] 0.5219 120 6 -7.98 -0.2552 MIMAT0005474 dme-miR-960 34608 CG6686 cgauaCGUUAGACCUUAUGAGu ||: || ||||||: aauccGCGUACU-AAAUACUUa 2 18 71 91 [dm3:2L:11984416-11984436:-] 0.5894 127 0 -10.13 -0.1398 MIMAT0005474 dme-miR-960 34608 CG6686 cgauaCGUUAGACCUUAUGAGu ||: || ||||||: aauccGCGUACU-AAAUACUUa 2 18 71 91 [dm3:2L:11984416-11984436:-] 0.5894 127 0 -10.13 -0.1397 MIMAT0005476 dme-miR-962 34608 CG6686 cugucgUA-GUUAAA--GAGAUGGAAUa || || ||| |:||:|||| auucaaAUACACUUUGGAUUUAUCUUAa 2 20 147 174 [dm3:2L:11984333-11984360:-] 0.5597 137 0 -8.52 -0.1219 MIMAT0005483 dme-miR-1002 34608 CG6686 agcgggaaaCAUAGGUGAUGAAUu ||| : | |||||| cuaauccgcGUACUAAAUACUUAa 2 16 69 92 [dm3:2L:11984415-11984438:-] 0.5894 123 6 -12.70 -0.1431 MIMAT0005483 dme-miR-1002 34608 CG6686 agcgggaaaCAUAGGUGAUGAAUu ||| : | |||||| cuaauccgcGUACUAAAUACUUAa 2 16 69 92 [dm3:2L:11984415-11984438:-] 0.5894 123 6 -12.70 -0.1430 MIMAT0005507 dme-miR-137 34608 CG6686 gaugcacauaagaguUCGUUAu |||||| ggcgcaggaaagacuAGCAAUu 2 8 6 27 [dm3:2L:11984480-11984501:-] 0.5894 120 6 -7.44 -0.1596 MIMAT0005507 dme-miR-137 34608 CG6686 gaugcacauaagaguUCGUUAu |||||| ggcgcaggaaagacuAGCAAUu 2 8 6 27 [dm3:2L:11984480-11984501:-] 0.5894 120 6 -7.44 -0.1901 MIMAT0005516 dme-miR-252 34608 CG6686 gaGGACGCCGUGA-UCAUGAAUc :| || |:||| | |||||| aaUCCGC-GUACUAAAUACUUAa 2 21 71 92 [dm3:2L:11984415-11984436:-] 0.5894 129 6 -17.23 -0.1445 MIMAT0005516 dme-miR-252 34608 CG6686 gaGGACGCCGUGA-UCAUGAAUc :| || |:||| | |||||| aaUCCGC-GUACUAAAUACUUAa 2 21 71 92 [dm3:2L:11984415-11984436:-] 0.5894 129 6 -17.23 -0.1444 MIMAT0005027 dme-miR-1014 34608 CG6686 gacGUUUACUUU-UAC-UUAAAa |:: | ||| ||| ||||| aucCGGCUCAAAUAUGUAAUUUu 2 19 114 136 [dm3:2L:11984371-11984393:-] 0.5934 121 0 -6.99 -1.2039 MIMAT0005027 dme-miR-1014 34608 CG6686 gacGUUUACUUU-UAC-UUAAAa |:: | ||| ||| ||||| aucCGGCUCAAAUAUGUAAUUUu 2 19 114 136 [dm3:2L:11984371-11984393:-] 0.5934 121 0 -6.99 -1.2033

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6686 RAID00203551 dme-miR-958-3p miRNA MIMAT0005471 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID00497100 dme-miR-308-3p miRNA MIMAT0000399 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID00533861 dme-miR-1002-5p miRNA MIMAT0005483 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID00601185 dme-miR-283-5p miRNA MIMAT0000347 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID00874904 dme-miR-960-5p miRNA MIMAT0005474 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID01219143 dme-miR-92b-3p miRNA MIMAT0000358 CG6686 mRNA 34608 Prediction 0.2381 CG6686 RAID01423703 dme-miR-962-5p miRNA MIMAT0005476 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID01475955 dme-miR-33-5p miRNA MIMAT0000342 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID01508820 dme-miR-92a-3p miRNA MIMAT0000334 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID01567551 dme-miR-1014-3p miRNA MIMAT0005027 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID02103721 dme-miR-310-3p miRNA MIMAT0000402 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID02379566 dme-miR-311-3p miRNA MIMAT0000403 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID02506604 dme-miR-137-3p miRNA MIMAT0005507 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID02662448 dme-miR-312-3p miRNA MIMAT0000404 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID02929318 dme-miR-313-3p miRNA MIMAT0000405 CG6686 mRNA 34608 Prediction 0.2202 CG6686 RAID03511709 dme-miR-14-3p miRNA MIMAT0000120 CG6686 mRNA 34608 Prediction 0.1828 CG6686 RAID03600490 dme-miR-252-5p miRNA MIMAT0005516 CG6686 mRNA 34608 Prediction 0.2202