DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 34616 CG6734 ugGUCAUGGACUACAUUAUGAgu || |::|| | |||||| caCACCAUUUG-UACAAUACUau 3 22 13 34 [dm3:2L:12014659-12014680:-] 0.6734 131 0 -9.79 -0.3068 MIMAT0000364 dme-miR-289 34616 CG6734 ucagcguccgaggugAAUUUAUAAAu | |||||||| uaagcuggaaagaggUAAAAUAUUUa 2 12 323 348 [dm3:2L:12014345-12014370:-] 0.4867 147 7 -10.58 -1.1925 MIMAT0000364 dme-miR-289 34616 CG6734 ucagcguccgAGGUGAAUUUAUAAAu | :|:||| |||||| acaauuuauaUGUAUUUAUAUAUUUa 2 17 248 273 [dm3:2L:12014420-12014445:-] 0.4867 132 6 -8.78 -0.1381 MIMAT0000364 dme-miR-289 34616 CG6734 ucagcguccgagGUGAAUUUAUAAau ||| ||||||| uauuuucaacggCAC-CAAAUAUUau 3 15 58 82 [dm3:2L:12014611-12014635:-] 0.7042 128 0 -9.35 -0.1670 MIMAT0000388 dme-miR-303 34616 CG6734 uggucaaaggacaCUUUGGAUUu ||||||||| uggacaucgacaaGAAACCUAAc 2 11 104 126 [dm3:2L:12014567-12014589:-] 0.4867 150 7 -13.29 -0.2079 MIMAT0005464 dme-miR-iab-4as-3p 34616 CG6734 auuugcauaUGACU-UACAUAGg |:| | ||||||: agguccacaAUUUAUAUGUAUUu 2 14 242 264 [dm3:2L:12014429-12014451:-] 0.4867 128 0 -5.54 -0.1300 MIMAT0005481 dme-miR-966 34616 CG6734 ggugUGUCGGGUGUUGGGUgu | | : :| |||||| aauaAAAAUGUAAAACCCAaa 3 18 368 388 [dm3:2L:12014305-12014325:-] 0.4144 125 0 -8.66 -0.4341 MIMAT0005488 dme-miR-972 34616 CG6734 cggAUUUAUAAGCA-UAACAUGu ||:| | | | ||||||: caaUAGA-AGACAUAAUUGUAUu 2 20 287 308 [dm3:2L:12014385-12014406:-] 0.4867 128 0 -5.64 -0.1032 MIMAT0005488 dme-miR-972 34616 CG6734 cggauuuauaagcauAACAUGu |||||| uugguaucacaccauUUGUACa 2 8 6 27 [dm3:2L:12014666-12014687:-] 0.6734 120 6 -9.07 -0.4291 MIMAT0005018 dme-miR-1005 34616 CG6734 gacgcUUAAUUUC-UAAGGUCu ||| |||| ||||||| agcauAAUCAAAGCAUUCCAGg 2 17 223 244 [dm3:2L:12014449-12014470:-] 0.4867 163 7 -15.79 -0.4873 MIMAT0005029 dme-miR-1016 34616 CG6734 gaUUCAUACCUCUCUCCACUu ||| |||| |||||| | uuAAG-CUGGAAAGAGGUAAa 2 20 322 341 [dm3:2L:12014352-12014371:-] 0.4867 133 0 -17.75 -0.1149 MIMAT0011784 dme-miR-2279* 34616 CG6734 uuaAAGUGUGUGUCUAUAAAUu | :::|: :| ||||||| uuaUAUGUAUUUAUAUAUUUAu 2 20 253 274 [dm3:2L:12014419-12014440:-] 0.4867 151 7 -5.24 -1.0205 MIMAT0011784 dme-miR-2279* 34616 CG6734 uuaaagugugugUCUAUAAAUu | ||||||| uggaaagagguaAAAUAUUUAu 2 11 328 349 [dm3:2L:12014344-12014365:-] 0.4867 142 7 -2.45 -1.0766 MIMAT0011784 dme-miR-2279* 34616 CG6734 uuaaagUGUGUGUCUAUAAAUu |||:| :|||||| uagaagACAUAAUUGUAUUUAa 2 17 290 311 [dm3:2L:12014382-12014403:-] 0.4867 136 6 -9.23 -0.1717 MIMAT0011784 dme-miR-2279* 34616 CG6734 uuAAAGUG-UGUG-U-CUAUAA-AUu || :|| |:|| | |||||| || auUUGUACAAUACUAUGAUAUUAUAg 2 21 19 44 [dm3:2L:12014649-12014674:-] 0.6734 121 0 -9.45 -1.1888 MIMAT0011791 dme-miR-2283 34616 CG6734 uaaCAGCAUAAGU-ACUAUAAAAg ||| :||:| | |||||| auaGUCUAGUUUAUUUUUAUUUUc 2 21 41 64 [dm3:2L:12014629-12014652:-] 0.7042 127 6 -10.90 -0.3117 MIMAT0011791 dme-miR-2283 34616 CG6734 uaacagcauaaguacuAUAAAAg |||||| caacggcaccaaauauUAUUUUa 2 8 64 86 [dm3:2L:12014607-12014629:-] 0.7350 120 6 -4.55 -0.4606 MIMAT0012196 dme-miR-2489 34616 CG6734 ugacguuUAUGUU--GUAUGUUAu | || | ::|||||| ugguaucACACCAUUUGUACAAUa 2 16 7 30 [dm3:2L:12014663-12014686:-] 0.6734 126 6 -9.38 -0.6554 MIMAT0012199 dme-miR-2492 34616 CG6734 aaacuuucgagagcugUUUUGUa |||||| uauauagauauacaggAAAACAa 2 8 347 369 [dm3:2L:12014324-12014346:-] 0.4867 120 6 -3.50 -0.2755 MIMAT0000105 dme-miR-1 34616 CG6734 gagGUAUGAAGAAAUGUAAGGu |||| || :|||||| uagCAUA-AUCAAAGCAUUCCa 2 20 222 242 [dm3:2L:12014451-12014471:-] 0.4867 133 6 -14.35 -0.1502 MIMAT0000114 dme-miR-9a 34616 CG6734 aguaugucgaucuauUGGUUUcu |||||| uuuauuuucaacggcACCAAAua 3 9 56 78 [dm3:2L:12014615-12014637:-] 0.7042 120 0 -9.92 -0.3161 MIMAT0000115 dme-miR-10-5p 34616 CG6734 uuguuUAAGCCUAGAUGUCCca || : ||| |||||| uauuuAUAUAGAUAUACAGGaa 3 18 343 364 [dm3:2L:12014329-12014350:-] 0.4867 137 0 -10.25 -0.3348 MIMAT0000119 dme-miR-13b 34616 CG6734 ugAGCAGUUUUACCGACACUAu |:|| | ||| || |||| auUUGU-ACAAU-ACUAUGAUa 2 21 19 38 [dm3:2L:12014655-12014674:-] 0.6734 120 0 -9.96 -0.2202 MIMAT0000319 dme-miR-263a 34616 CG6734 cacuUAAGAAGGUCAC-GGUAAUug |||: | :| || |||||| auauAUUUAUGUA-UGUCCAUUAca 3 21 265 288 [dm3:2L:12014405-12014428:-] 0.4867 133 0 -8.77 -0.2178 MIMAT0000340 dme-miR-133 34616 CG6734 ugucgaccAACUUCCCCUGGUu || || || |||| uuuuuauuUUCAACGGCACCAa 2 15 54 75 [dm3:2L:12014618-12014639:-] 0.7042 122 0 -8.49 -0.2738 MIMAT0000341 dme-miR-279 34616 CG6734 aauUACUCACACCU-AGAUCAGu |||| | | ||||||: acuAUGAUAUUAUAGUCUAGUUu 2 20 30 52 [dm3:2L:12014641-12014663:-] 0.6734 130 0 -10.24 -0.3197 MIMAT0000347 dme-miR-283 34616 CG6734 ucuUAAUGGUCGACUAUAAau | |||:| ||||||| uacAAUACUA--UGAUAUUau 3 19 24 42 [dm3:2L:12014651-12014669:-] 0.6734 135 0 -7.41 -0.1814 MIMAT0000347 dme-miR-283 34616 CG6734 ucuuaauggucgacUAUAAAu |||||| uuauauguauuuauAUAUUUa 2 8 253 273 [dm3:2L:12014420-12014440:-] 0.4867 120 6 -3.93 -0.1381 MIMAT0000347 dme-miR-283 34616 CG6734 ucuuaauggucgacUAUAAAu |||||| uggaaagagguaaaAUAUUUa 2 8 328 348 [dm3:2L:12014345-12014365:-] 0.4867 120 6 -4.27 -0.1626 MIMAT0000355 dme-miR-210 34616 CG6734 aucggcgacaguguGCGUGUu |||||| auuauaauuacgauCGCACAu 2 8 184 204 [dm3:2L:12014489-12014509:-] 0.4867 120 6 -12.40 -0.1354 MIMAT0000359 dme-miR-286 34616 CG6734 ucGUGCUCACAA-GCCAGAUCAGu :|:|| | || : |||||||: acUAUGA-UAUUAUAGUCUAGUUu 2 22 30 52 [dm3:2L:12014641-12014663:-] 0.6734 138 0 -13.24 -0.3197 MIMAT0000390 dme-miR-304 34616 CG6734 gaGUGUAAAUGUU-U-A-ACUCUAAu ||: | ||||| | | ||| ||| acCAUUUGUACAAUACUAUGAUAUUa 2 22 16 41 [dm3:2L:12014652-12014677:-] 0.6734 126 0 -8.52 -0.1347 MIMAT0000391 dme-miR-305 34616 CG6734 gucucguggacuacuuCAUGUUa |||||| ugguaucacaccauuuGUACAAu 2 8 7 29 [dm3:2L:12014664-12014686:-] 0.6734 120 6 -12.57 -0.1838 MIMAT0000392 dme-miR-9c 34616 CG6734 agaugucGAUCUUAUGGUUUcu | | :: |||||| uuauuuuCAACGGCACCAAAua 3 16 57 78 [dm3:2L:12014615-12014636:-] 0.7042 123 0 -9.13 -0.3161 MIMAT0000395 dme-miR-9b 34616 CG6734 guAUGUCGAUUUUAGUGGUUUcu ||: : || : ||||||| uuUAUUUUCAACGGCACCAAAua 3 22 56 78 [dm3:2L:12014615-12014637:-] 0.7042 133 0 -9.48 -0.3135 MIMAT0000399 dme-miR-308 34616 CG6734 gaguguCAUAUUAGGACACUAa ||| ||| || |||| ccauuuGUACAAUACUAUGAUa 2 17 17 38 [dm3:2L:12014655-12014676:-] 0.6734 132 0 -9.18 -0.2202 MIMAT0000407 dme-miR-315 34616 CG6734 cgaAAGACUCGUUGUUAGUUUu |||| ||| |:||||||| uucUUCU-AGC-AUAAUCAAAg 2 20 216 235 [dm3:2L:12014458-12014477:-] 0.4867 163 7 -16.10 -0.6167 MIMAT0005474 dme-miR-960 34616 CG6734 cgauacGUUAGAC--CUUAUGAgu | ||:|| |||||| aucacaCCAUUUGUACAAUACUau 3 17 11 34 [dm3:2L:12014659-12014682:-] 0.6734 127 0 -7.35 -0.3042 MIMAT0005483 dme-miR-1002 34616 CG6734 agCGGGAAACAUAGGUGAUGAAUu |: :|| | : |||||||| uuGUAUUUAAAAGUAACUACUUAa 2 23 302 325 [dm3:2L:12014368-12014391:-] 0.4867 150 7 -13.68 -1.1943 MIMAT0005484 dme-miR-968 34616 CG6734 guugggAAAUUACCUAUGAUGAAu ||||| | ||||||| auuguaUUUAAAAGUAACUACUUa 2 19 301 324 [dm3:2L:12014369-12014392:-] 0.4867 158 7 -11.49 -1.1952 MIMAT0005487 dme-miR-971 34616 CG6734 agUGACAUUCUUCAUUGUGGUu |:| | :| | | |||||| -aAUUUUUGGUA-UCACACCAu 2 21 1 20 [dm3:2L:12014673-12014692:-] 0.6734 122 6 -9.22 -0.2454 MIMAT0005504 dme-miR-987 34616 CG6734 guaguuaGGUCUGAUAAAUGAAAu ||| | || |||:||| aacggcaCCA-AAUA-UUAUUUUa 2 18 65 86 [dm3:2L:12014607-12014628:-] 0.7350 133 0 -9.24 -0.1167 MIMAT0005515 dme-miR-996 34616 CG6734 ucUGCUCGUACU-UUAGAUCAGu |:|| :|| | |:||||||: cuAUGA-UAUUAUAGUCUAGUUu 2 21 31 52 [dm3:2L:12014641-12014662:-] 0.6734 141 0 -13.19 -0.3197 MIMAT0005516 dme-miR-252 34616 CG6734 gaggacgccgugaucAUGAAUc |||||| guauuuaaaaguaacUACUUAa 2 8 304 325 [dm3:2L:12014368-12014389:-] 0.4867 120 6 -4.03 -0.1053 MIMAT0005520 dme-miR-1000 34616 CG6734 ugacgacacuguccUGUUAUa |||||| aucacaccauuuguACAAUAc 2 8 11 31 [dm3:2L:12014662-12014682:-] 0.6734 120 6 -5.27 -0.6195 MIMAT0005520 dme-miR-1000 34616 CG6734 ugacgacacuguccUGUUAUa |||||| agauauacaggaaaACAAUAa 2 8 352 372 [dm3:2L:12014321-12014341:-] 0.4867 120 6 -10.08 -0.2595

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6734 RAID00074139 dme-miR-985-3p miRNA MIMAT0005502 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00085008 dme-miR-9c-5p miRNA MIMAT0000392 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00093764 dme-miR-987-5p miRNA MIMAT0005504 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00105205 dme-miR-263a-5p miRNA MIMAT0000319 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00130728 dme-miR-968-5p miRNA MIMAT0005484 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID00243251 dme-miR-286-3p miRNA MIMAT0000359 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00257165 dme-miR-252-5p miRNA MIMAT0005516 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID00292894 dme-miR-1-3p miRNA MIMAT0000105 CG6734 mRNA 34616 Prediction 0.2381 CG6734 RAID00575699 dme-miR-10-5p miRNA MIMAT0000115 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00714776 dme-miR-210-3p miRNA MIMAT0000355 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID00896509 dme-miR-958-3p miRNA MIMAT0005471 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01056591 dme-miR-303-5p miRNA MIMAT0000388 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01210113 dme-miR-1002-5p miRNA MIMAT0005483 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID01237456 dme-miR-308-3p miRNA MIMAT0000399 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01276750 dme-miR-283-5p miRNA MIMAT0000347 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID01457168 dme-miR-1011-3p miRNA MIMAT0005024 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01561516 dme-miR-960-5p miRNA MIMAT0005474 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01651282 dme-miR-9b-5p miRNA MIMAT0000395 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01651528 dme-miR-279-3p miRNA MIMAT0000341 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID01733790 dme-miR-996-3p miRNA MIMAT0005515 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID02107236 dme-miR-1005-3p miRNA MIMAT0005018 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID02181807 dme-miR-33-5p miRNA MIMAT0000342 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID02349204 dme-miR-133-3p miRNA MIMAT0000340 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID02506336 dme-miR-9a-5p miRNA MIMAT0000114 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID03241412 dme-miR-13b-3p miRNA MIMAT0000119 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID03274416 dme-miR-1000-5p miRNA MIMAT0005520 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID03367046 dme-miR-304-5p miRNA MIMAT0000390 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID03592027 dme-miR-305-5p miRNA MIMAT0000391 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID03635402 dme-miR-315-5p miRNA MIMAT0000407 CG6734 mRNA 34616 Prediction 0.2202 CG6734 RAID03800700 dme-miR-971-3p miRNA MIMAT0005487 CG6734 mRNA 34616 Prediction 0.1828 CG6734 RAID04042247 dme-miR-972-3p miRNA MIMAT0005488 CG6734 mRNA 34616 Prediction 0.1828