DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 34719 CG9426 gccccgcUC-UCUUACUAUUCc || | | ||||||| aauaaauAGCAUACUGAUAAGa 2 15 745 766 [dm3:2L:13216393-13216414:-] 0.3561 145 7 -5.62 -0.7630 MIMAT0000364 dme-miR-289 34719 CG9426 ucagcguccgagGUGAAUUUAUAAAu ::|| :||||||| uucuacuucuaaUGCUCGAAUAUUUa 2 15 597 622 [dm3:2L:13216537-13216562:-] 0.4511 150 7 -11.32 -0.5312 MIMAT0005464 dme-miR-iab-4as-3p 34719 CG9426 auUUGCAUAUGACUUACAUAGg |||||| || ||||||| aaAACGUA---UGUAUGUAUCa 2 21 640 658 [dm3:2L:13216501-13216519:-] 0.4511 160 7 -18.99 -1.0211 MIMAT0005464 dme-miR-iab-4as-3p 34719 CG9426 auuuGCAUAUGACUUACAUAGg :|| | | |||||||: uguuUGUUUUC-AAAUGUAUUc 2 19 421 441 [dm3:2L:13216718-13216738:-] 0.5834 132 0 -10.41 -0.1539 MIMAT0005482 dme-miR-967 34719 CG9426 gcgaAGAGGUCUCCAU-AGAGa |:|:|| | ||| |||| uuugUUUUCAAAUGUAUUCUCu 2 18 423 444 [dm3:2L:13216715-13216736:-] 0.5834 125 0 -11.39 -1.1309 MIMAT0005499 dme-miR-983 34719 CG9426 agUAAUCAAGCUUUGCAUA-AUa | | ||: |||||||| || gcAAUCUUUUAAAACGUAUGUAu 2 21 630 652 [dm3:2L:13216507-13216529:-] 0.4511 128 0 -8.77 -0.6221 MIMAT0005026 dme-miR-1013 34719 CG9426 gcUCAAGCCGU-AUGAAAAUa ||||: || |||||||| caAGUUUUUCAUUACUUUUAa 2 19 726 746 [dm3:2L:13216413-13216433:-] 0.4036 161 7 -10.44 -1.1343 MIMAT0011784 dme-miR-2279* 34719 CG9426 uuAAAGUGUGUGUCUAUAAAUu | | |::| |: ||||||| cuUCUAAUGCUCGAAUAUUUAu 2 21 602 623 [dm3:2L:13216536-13216557:-] 0.4511 156 7 -6.04 -0.5178 MIMAT0011790 dme-miR-2282 34719 CG9426 uaagauaaaaaucgaGUGGCUa |||||| aaaagcgaaaccaaaCACCGAa 2 8 316 337 [dm3:2L:13216822-13216843:-] 0.5834 120 6 -11.62 -0.2938 MIMAT0011791 dme-miR-2283 34719 CG9426 uaACA-GCAUAAGUACU-AUAAAAg ||| :|||| :||| |||||| uaUGUAUGUAUCAGUGAUUAUUUUu 2 22 646 670 [dm3:2L:13216489-13216513:-] 0.4511 136 6 -13.49 -0.9000 MIMAT0012201 dme-miR-2493 34719 CG9426 ugCGGAGCGUGUUU-AUGUGUGCc |::|: : ||| ||||||| ucGUUUUAAGAAAACCACACACGa 2 22 43 66 [dm3:2L:13217093-13217116:-] 0.4874 148 7 -16.40 -0.7722 MIMAT0012214 dme-miR-2500* 34719 CG9426 ccAUAACA-U-AUACACAC-AAGGAAUg ||| || | || | | ||||||| agUAUAGUCAUUAGGGACGUUUCCUUAu 2 24 533 560 [dm3:2L:13216599-13216626:-] 0.4986 148 7 -13.38 -0.3483 MIMAT0012215 dme-miR-2500 34719 CG9426 gacUCCAGGUGUGUGUUUUAGg ||| :|| |||||||||| ggaAGGGUCAAACACAAAAUCu 2 20 17 38 [dm3:2L:13217121-13217142:-] 0.3914 175 7 -22.14 -0.1690 MIMAT0000110 dme-miR-5 34719 CG9426 guaUAGUGUUGCUAGC-AAGGAAa :|||: | |: || |||||| auaGUCAUUAGGGACGUUUCCUUa 2 21 536 559 [dm3:2L:13216600-13216623:-] 0.4986 128 6 -15.71 -0.5103 MIMAT0000112 dme-miR-7 34719 CG9426 uguUGU-UUUAGUGAU--CAGAAGGu ||| | ||||| | |||||| guuACACACAUCACAAGUCUCUUCCc 2 21 105 130 [dm3:2L:13217029-13217054:-] 0.5834 130 6 -16.29 -0.1539 MIMAT0000113 dme-miR-8 34719 CG9426 cuguAGAAAUGGACUGUCAUAAu || | || ||||||||| uaauUCCAUUCC-GACAGUAUUc 2 20 578 599 [dm3:2L:13216560-13216581:-] 0.4511 157 7 -14.53 -0.5047 MIMAT0000113 dme-miR-8 34719 CG9426 cuGUAGAAAUGGACUGUCA-UAAu |:| | ||: | |||| ||| aaCGUAUGUAUGUAUCAGUGAUUa 2 22 642 665 [dm3:2L:13216494-13216517:-] 0.4511 121 0 -11.42 -1.1374 MIMAT0000114 dme-miR-9a 34719 CG9426 agUAUGUCGAUCUAUUGGUUUCu |||:| ||| |||||||| aaAUAUA---AGA-AACCAAAGc 2 22 338 356 [dm3:2L:13216803-13216821:-] 0.5834 155 7 -13.29 -1.0697 MIMAT0000114 dme-miR-9a 34719 CG9426 aguaugucGAUCUAU-UGGUUUCu ||| |: ||||||| aaaaguccCUAACUGUACCAAAGc 2 16 767 790 [dm3:2L:13216369-13216392:-] 0.4490 146 7 -10.78 -0.7744 MIMAT0012531 dme-miR-10-3p 34719 CG9426 uuuggagagaUCUUGGCUUAAac | | |||||| aucgaaauaaAUAUACGAAUUau 3 14 842 864 [dm3:2L:13216295-13216317:-] 0.5418 121 0 -6.55 -0.1404 MIMAT0000335 dme-miR-219 34719 CG9426 guucuuaacgcaaaccUGUUAGu |||||| aagcaaauuaauacaaACAAUCa 2 8 787 809 [dm3:2L:13216350-13216372:-] 0.5418 120 6 -7.34 -0.1643 MIMAT0000347 dme-miR-283 34719 CG9426 ucuUA-AUGGUCGACU-AUAAAu || ||:||| ||| ||||| uguAUGUAUCAG-UGAUUAUUUu 2 19 648 669 [dm3:2L:13216490-13216511:-] 0.4511 127 0 -10.96 -0.7668 MIMAT0000392 dme-miR-9c 34719 CG9426 agaUGUCGAUCUUAUGGUUUCu | | || :| ||||||| gaaAAAUAUAAGAAACCAAAGc 2 20 335 356 [dm3:2L:13216803-13216824:-] 0.5834 151 7 -12.10 -1.0697 MIMAT0000392 dme-miR-9c 34719 CG9426 agaugucgaucuUAUGGUUUCu :|||||||| aagucccuaacuGUACCAAAGc 2 11 769 790 [dm3:2L:13216369-13216390:-] 0.4490 146 7 -12.87 -0.7744 MIMAT0000395 dme-miR-9b 34719 CG9426 guaugucGAUUUUAGUGGUUUCu |||| :||||||| aaaguccCUAACUGUACCAAAGc 2 17 768 790 [dm3:2L:13216369-13216391:-] 0.4490 152 7 -13.72 -0.7670 MIMAT0000395 dme-miR-9b 34719 CG9426 guaUGUCGAUUUUAGUGGUUUCu | | |||:| ||||||| gaaAAAUAUAAGA-AACCAAAGc 2 21 335 356 [dm3:2L:13216803-13216824:-] 0.5834 150 7 -10.55 -1.0671 MIMAT0000406 dme-miR-314 34719 CG9426 ggcuUGAAUA-ACCGAGCUUAu |||| | |||||||| uucuACUUCUAAUGCUCGAAUa 2 18 597 618 [dm3:2L:13216541-13216562:-] 0.4511 152 7 -15.23 -0.8949 MIMAT0000407 dme-miR-315 34719 CG9426 cgaaagacucgUUGUUAGUUUu |||||||||| aaauuaauacaAACAAUCAAAg 2 12 791 812 [dm3:2L:13216347-13216368:-] 0.5418 155 7 -12.03 -0.6553 MIMAT0000407 dme-miR-315 34719 CG9426 cgAAAGACUCGU--UG---UUAGUUuu || |||| || |: |||||| aaUUGCUGAACAUUAUUUGAAUCAAuu 3 21 391 417 [dm3:2L:13216742-13216768:-] 0.5834 130 0 -8.02 -0.1067 MIMAT0000412 dme-miR-iab-4-5p 34719 CG9426 aguccuaUGUAAGUCAUAUGCa ||||| ||||||| cucuuugACAUU--GUAUACGu 2 16 87 106 [dm3:2L:13217053-13217072:-] 0.5834 152 7 -13.70 -1.0230 MIMAT0000412 dme-miR-iab-4-5p 34719 CG9426 aguccuauguaagucAUAUGCa |||||| uauuaucgaaauaaaUAUACGa 2 8 838 859 [dm3:2L:13216300-13216321:-] 0.5418 120 6 -6.69 -0.4914 MIMAT0005478 dme-miR-964 34719 CG9426 uucaauucgaggggAUAAGAUu ||||||| uuccauuccgacagUAUUCUAc 2 9 581 602 [dm3:2L:13216557-13216578:-] 0.4511 140 7 -8.11 -0.3237 MIMAT0005478 dme-miR-964 34719 CG9426 uuCAAUUCGAGG---GGAUAAGAuu ||| : :|:| : |||||| uuGUUUGUUUUCAAAUGUAUUCUcu 3 21 420 444 [dm3:2L:13216715-13216739:-] 0.5834 123 0 -8.58 -0.1156 MIMAT0005487 dme-miR-971 34719 CG9426 agugaCAUUCUUCAUUGUGGUu | :| | ||||||: uaaaaGCGAAACCAAACACCGa 2 18 315 336 [dm3:2L:13216823-13216844:-] 0.5834 125 0 -10.69 -0.2186 MIMAT0005504 dme-miR-987 34719 CG9426 guAGU-UAGGUCUGAUA--AAUGAAAu ||: | | || :| | ||||||| uaUCGUAACAAGUUUUUCAUUACUUUu 2 23 718 744 [dm3:2L:13216415-13216441:-] 0.4036 148 7 -10.43 -0.9060 MIMAT0005506 dme-miR-989 34719 CG9426 caAGGUGAUGCAGUGUAGUGu | |::||| |||||||| uaUACGUUAC-ACACAUCACa 2 20 100 119 [dm3:2L:13217040-13217059:-] 0.5834 157 7 -21.06 -0.9582 MIMAT0005511 dme-miR-929 34719 CG9426 guuagacugaGGCAAUCCCUc :| ||||||| auuaguauagUCAUUAGGGAc 2 12 530 550 [dm3:2L:13216609-13216629:-] 0.4986 143 7 -11.39 -0.3031 MIMAT0005513 dme-miR-994 34719 CG9426 uagugccgaUGAUAAAGGAAUc || :|||||||| ucauuagggAC-GUUUCCUUAu 2 14 540 560 [dm3:2L:13216599-13216619:-] 0.4986 147 7 -13.91 -0.3511 MIMAT0005019 dme-miR-1006 34719 CG9426 gauacUUAUUCUUUA-GCUUAAau ||||| | || |||||| aucgaAAUAA-AUAUACGAAUUau 3 19 842 864 [dm3:2L:13216295-13216317:-] 0.5418 139 0 -5.81 -0.1363

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG9426 RAID00068611 dme-mir-iab-4 miRNA MI0000432 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID00082427 dme-miR-10-3p miRNA MIMAT0012531 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID00157958 dme-miR-315-5p miRNA MIMAT0000407 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID00310864 dme-miR-971-3p miRNA MIMAT0005487 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID00425129 dme-miR-314-3p miRNA MIMAT0000406 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID00467335 dme-miR-980-3p miRNA MIMAT0005496 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID00638169 dme-miR-987-5p miRNA MIMAT0005504 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID00654580 dme-miR-9c-5p miRNA MIMAT0000392 CG9426 mRNA 34719 Prediction 0.2381 CG9426 RAID00756421 dme-miR-8-3p miRNA MIMAT0000113 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID01047578 dme-miR-219-5p miRNA MIMAT0000335 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID01192677 dme-miR-994-5p miRNA MIMAT0005513 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID01443291 dme-miR-iab-4-5p miRNA MIMAT0000412 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID01761486 dme-miR-989-3p miRNA MIMAT0005506 CG9426 mRNA 34719 Prediction 0.2381 CG9426 RAID01843446 dme-miR-283-5p miRNA MIMAT0000347 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID02208152 dme-miR-9b-5p miRNA MIMAT0000395 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID02574294 dme-miR-1013-3p miRNA MIMAT0005026 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID02723206 dme-miR-284-3p miRNA MIMAT0000348 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID02755025 dme-miR-33-5p miRNA MIMAT0000342 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID02971809 dme-miR-1006-3p miRNA MIMAT0005019 CG9426 mRNA 34719 Prediction 0.1828 CG9426 RAID03057665 dme-miR-9a-5p miRNA MIMAT0000114 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID03186348 dme-miR-929-3p miRNA MIMAT0005511 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID03251603 dme-miR-964-5p miRNA MIMAT0005478 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID03417750 dme-miR-5-5p miRNA MIMAT0000110 CG9426 mRNA 34719 Prediction 0.2202 CG9426 RAID04000990 dme-miR-7-5p miRNA MIMAT0000112 CG9426 mRNA 34719 Prediction 0.1828