DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 35420 cul-2 ucagcguccgaggugaauuUAUAAAu |||||| auucaauuguagauauaauAUAUUUc 2 8 273 298 [dm3:2L:21663093-21663118:+] 0.5411 120 6 -6.99 -0.2017 MIMAT0000364 dme-miR-289 35420 cul-2 ucagcguccgaggugaauuUAUAAAu |||||| auauuucuuuauguauuguAUAUUUa 2 8 292 317 [dm3:2L:21663112-21663137:+] 0.5411 120 6 -7.79 -0.1294 MIMAT0005464 dme-miR-iab-4as-3p 35420 cul-2 auUUGCAU-AUGACUUACAUAGg ||: || | || ||||||: auAAUAUAUUUCUUUAUGUAUUg 2 21 287 309 [dm3:2L:21663107-21663129:+] 0.5411 139 0 -7.45 -0.1756 MIMAT0005464 dme-miR-iab-4as-3p 35420 cul-2 auUUGCAU-AUGACUUACAUAgg ||:||: |: ||||||| auAAUGUGCUGGAAAAUGUAUaa 3 21 349 371 [dm3:2L:21663169-21663191:+] 0.5251 135 0 -13.05 -0.1197 MIMAT0005488 dme-miR-972 35420 cul-2 cggauuuAUAAGCAUAACAUGu | | :||||||||: auauuucUUUAUGUAUUGUAUa 2 16 292 313 [dm3:2L:21663112-21663133:+] 0.5411 139 0 -13.12 -0.2178 MIMAT0005488 dme-miR-972 35420 cul-2 cggauuuAUAAGCAUAACAUgu ||||| |||||| uguguccUAUUC-AAUUGUAga 3 16 265 285 [dm3:2L:21663085-21663105:+] 0.5411 133 0 -9.36 -0.2550 MIMAT0005026 dme-miR-1013 35420 cul-2 gcuCAA-GCCGUAUGAAAAUa ||| | | ||||||||| gacGUUACUG-AUACUUUUAa 2 18 208 227 [dm3:2L:21663028-21663047:+] 0.5411 154 7 -9.37 -1.2378 MIMAT0011784 dme-miR-2279* 35420 cul-2 uuaAAGUGUGUGUC-UAUAAAUu ||:|:::|: | ||||||| uucUUUAUGUAUUGUAUAUUUAu 2 20 296 318 [dm3:2L:21663116-21663138:+] 0.5411 158 7 -7.12 -1.1030 MIMAT0011784 dme-miR-2279* 35420 cul-2 uuAAAGUGUGUG-UCUAUAAAuu || :| |:|: | |||||| aaUUGUAGAUAUAAUAUAUUUcu 3 21 277 299 [dm3:2L:21663097-21663119:+] 0.5411 135 0 -5.13 -0.1568 MIMAT0011791 dme-miR-2283 35420 cul-2 uaACAGCAUAAGUACUAUAAAag ||| | || :| |||||| auUGUAG-AUAUAAUAUAUUUcu 3 22 278 299 [dm3:2L:21663098-21663119:+] 0.5411 135 0 -9.21 -0.1553 MIMAT0012201 dme-miR-2493 35420 cul-2 ugcGGAGCGUGUUUA-UGUGUGCc :|| |: : | | ||||||| uuaUCUGGUUUUAUUAACACACGc 2 21 315 338 [dm3:2L:21663135-21663158:+] 0.5411 147 7 -14.59 -0.9499 MIMAT0012206 dme-miR-2496* 35420 cul-2 augcuACCGGA--GAGUGUGUGCGUg |||::| :| ||||||||| uuaucUGGUUUUAUUAACACACGCAc 2 20 315 340 [dm3:2L:21663135-21663160:+] 0.5331 162 7 -25.45 -0.8837 MIMAT0012212 dme-miR-2499* 35420 cul-2 cguaacgcgacugcagaUGCGUGc |||||| ucugguuuuauuaacacACGCACa 2 8 318 341 [dm3:2L:21663138-21663161:+] 0.5331 120 6 -11.49 -0.2674 MIMAT0000347 dme-miR-283 35420 cul-2 ucuuaauggucgacUAUAAAu |||||| auuguagauauaauAUAUUUc 2 8 278 298 [dm3:2L:21663098-21663118:+] 0.5411 120 6 -2.20 -0.1999 MIMAT0000347 dme-miR-283 35420 cul-2 ucuuaauggucgacUAUAAAu |||||| ucuuuauguauuguAUAUUUa 2 8 297 317 [dm3:2L:21663117-21663137:+] 0.5411 120 6 -5.73 -0.1282 MIMAT0000352 dme-miR-79 35420 cul-2 uacGAAACCAUUAGAUCGAAau |||| ||||:|||||| auaCUUU--UAAUUUAGCUUag 3 20 218 237 [dm3:2L:21663038-21663057:+] 0.5411 148 0 -13.10 -0.1313 MIMAT0000355 dme-miR-210 35420 cul-2 aucggcgacaGUGUGCGUGUu |||||||||| guuuuauuaaCACACGCACAa 2 12 322 342 [dm3:2L:21663142-21663162:+] 0.5331 155 7 -20.91 -1.0938 MIMAT0000390 dme-miR-304 35420 cul-2 gaguguaaauguuuaaCUCUAAu |||||| -------acugcgguaGAGAUUu 2 8 1 16 [dm3:2L:21662821-21662836:+] 0.5502 120 6 -8.92 -0.4200 MIMAT0000407 dme-miR-315 35420 cul-2 cgaaagACUCGUUGUUAGUUUu || |::: ||||||| gaaaggUGUGUGGAAAUCAAAc 2 17 186 207 [dm3:2L:21663006-21663027:+] 0.4366 152 7 -6.78 -0.3068 MIMAT0000407 dme-miR-315 35420 cul-2 cgaaagacucgUUGUUAGUUUu |: ||||||| auguuaaaaaaAGAAAUCAAAa 2 12 114 135 [dm3:2L:21662934-21662955:+] 0.3526 143 7 -6.98 -0.9678 MIMAT0005507 dme-miR-137 35420 cul-2 gaugcacauaagAGUUCGUUAu ||||||||| gaaaucaaaaggUCAAGCAAUu 2 11 126 147 [dm3:2L:21662946-21662967:+] 0.3322 150 7 -11.35 -0.3572 MIMAT0005030 dme-miR-1017 35420 cul-2 ccuacucaaAC-CCAUCUCGAAAg || ||||||| ||| -------acUGCGGUAGAGAUUUu 2 15 1 17 [dm3:2L:21662821-21662837:+] 0.5502 129 0 -12.99 -0.1348

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul2 RAID00415749 dme-miR-137-3p miRNA MIMAT0005507 Cul2 mRNA 35420 Prediction 0.2202 Cul2 RAID00738761 dme-mir-2a-1 miRNA MI0000117 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID00912897 dme-miR-283-5p miRNA MIMAT0000347 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID01235032 dme-miR-11-3p miRNA MIMAT0000116 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID01627517 dme-miR-958-3p miRNA MIMAT0005471 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID01663931 dme-mir-13b-1 miRNA MI0000134 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID01932022 dme-miR-79-3p miRNA MIMAT0000352 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID01941287 dme-miR-306-5p miRNA MIMAT0000393 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID02067447 dme-miR-1017-3p miRNA MIMAT0005030 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID02188745 dme-miR-304-5p miRNA MIMAT0000390 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID02873720 dme-miR-210-3p miRNA MIMAT0000355 Cul2 mRNA 35420 Prediction 0.2202 Cul2 RAID03139582 dme-miR-1013-3p miRNA MIMAT0005026 Cul2 mRNA 35420 Prediction 0.1828 Cul2 RAID03450741 dme-miR-315-5p miRNA MIMAT0000407 Cul2 mRNA 35420 Prediction 0.2202