DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 35529 SCAP auAGUAAAGUAUACGUUGCAUUUAUGu | | | ||:| :|| ||||||| aaUGACUAAAUGU-UAAAAUAAAUACa 2 26 321 346 [dm3:2R:1913829-1913854:-] 0.5158 155 7 -9.58 -1.3088 MIMAT0000364 dme-miR-289 35529 SCAP ucagcguccGAGGUGAAUUUAUAAau || |:||| |||||| uagaaucacCUACGCUU-AAUAUUca 3 18 355 379 [dm3:2R:1913796-1913820:-] 0.5158 139 0 -8.51 -0.1090 MIMAT0005482 dme-miR-967 35529 SCAP gcgaagaGGUCUCCAUAGAGa |:: | ||||||| acacaagCUGUACGUAUCUCa 2 15 145 165 [dm3:2R:1914010-1914030:-] 0.4255 146 7 -11.03 -0.6983 MIMAT0005025 dme-miR-1012 35529 SCAP gauaccccuuuuagaaACUGAUu |||||| ucagccuaauauaaaaUGACUAa 2 8 307 329 [dm3:2R:1913846-1913868:-] 0.5158 120 6 -7.57 -0.3238 MIMAT0011788 dme-miR-2281* 35529 SCAP aacguagacgucgacGUCUAUua |||||| cuaaacuaaaugaauCAGAUAua 3 9 232 254 [dm3:2R:1913921-1913943:-] 0.5158 120 0 -9.31 -0.2393 MIMAT0011791 dme-miR-2283 35529 SCAP uaacagcAUAAGUACUAUAAAAg || ||| ||||||| agauauaUACACAU-AUAUUUUc 2 17 248 269 [dm3:2R:1913906-1913927:-] 0.5158 150 7 -8.77 -0.8269 MIMAT0012196 dme-miR-2489 35529 SCAP ugACGUUUAUGUUGUAUGUUAu ||: || |:|| ||||| | aaUGUUAAAAUAA-AUACAUUa 2 21 329 349 [dm3:2R:1913826-1913846:-] 0.5158 130 0 -5.82 -0.1486 MIMAT0012209 dme-miR-2497 35529 SCAP gacGUUUGUAAC--AUUUACAAca :| | | || |||||||| uaaUAUAAAAUGACUAAAUGUUaa 3 20 313 336 [dm3:2R:1913839-1913862:-] 0.5158 134 0 -5.87 -0.3778 MIMAT0005480 dme-miR-965 35529 SCAP uuccccUUUUCG-AUAUGCGAAu |:|| | ||||||| uuuauuAGAAUCACCUACGCUUa 2 17 350 372 [dm3:2R:1913803-1913825:-] 0.5158 143 7 -10.97 -1.1694 MIMAT0005485 dme-miR-969 35529 SCAP uuuugAACGAAUCACCU-UGAg || || ||||| ||| uugugUUAGUUUGUGGACACUa 2 17 177 198 [dm3:2R:1913977-1913998:-] 0.4255 120 0 -12.14 -0.6933 MIMAT0005485 dme-miR-969 35529 SCAP uuuugaacgaaucaCCUUGAg |||||| cuccgguagguuaaGGAACUa 2 8 214 234 [dm3:2R:1913941-1913961:-] 0.5158 120 6 -9.19 -0.1363

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score SCAP RAID00096522 dme-miR-1012-3p miRNA MIMAT0005025 SCAP mRNA 35529 Prediction 0.1828 SCAP RAID00123124 dme-miR-967-5p miRNA MIMAT0005482 SCAP mRNA 35529 Prediction 0.1828 SCAP RAID01062607 dme-miR-4-3p miRNA MIMAT0000109 SCAP mRNA 35529 Prediction 0.1828 SCAP RAID01414849 dme-miR-965-3p miRNA MIMAT0005480 SCAP mRNA 35529 Prediction 0.2381 SCAP RAID03435766 dme-miR-977-3p miRNA MIMAT0005493 SCAP mRNA 35529 Prediction 0.1828 SCAP RAID03645929 dme-miR-315-5p miRNA MIMAT0000407 SCAP mRNA 35529 Prediction 0.1828 SCAP RAID03968381 dme-miR-969-5p miRNA MIMAT0005485 SCAP mRNA 35529 Prediction 0.2202