DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 35875 CG8272 gccccgcucuCUUACUAUUCc | |||||||| gguacgaaucGUAUGAUAAGu 2 12 329 349 [dm3:2R:4776193-4776213:-] 0.4158 147 7 -12.17 -0.6375 MIMAT0000343 dme-miR-280 35875 CG8272 auaguaaAGUAUACGU-UGCAUUUAUgu |:| |||:| :||||||| uaaguggUUA-AUGUAUUUGUAAAUAaa 3 21 591 617 [dm3:2R:4775925-4775951:-] 0.4875 137 0 -11.12 -0.1163 MIMAT0005475 dme-miR-961 35875 CG8272 uagagucaaugaccaCUAGUUu |||||| guauuuguaaauaaaGAUCAAa 2 8 603 624 [dm3:2R:4775918-4775939:-] 0.4875 120 6 -8.17 -0.5618 MIMAT0005481 dme-miR-966 35875 CG8272 ggugugucgggUGUUGGGUgu | |||||| aguuuaggagaAAAACCCAaa 3 11 469 489 [dm3:2R:4776053-4776073:-] 0.4883 122 0 -9.94 -0.1329 MIMAT0005488 dme-miR-972 35875 CG8272 cgGAUUUAUA-AGC-AUAACAUGu :| | |:| |:| |:|||||| ucUUCAUUGUCUUGAUGUUGUACu 2 21 14 37 [dm3:2R:4776505-4776528:-] 0.8446 138 6 -11.54 -0.1121 MIMAT0005021 dme-miR-1008 35875 CG8272 acAUUUG-UGUUUUUCGACAcu |: || || |||||| guUGUACUACUUUCAGCUGUac 3 20 30 51 [dm3:2R:4776491-4776512:-] 0.8446 122 0 -10.11 -0.1180 MIMAT0011784 dme-miR-2279* 35875 CG8272 uuaaaGUGUGUGUCUAUAAAUu | | |||| ||||||| acaacCCCCCACAUAUAUUUAu 2 18 85 106 [dm3:2R:4776436-4776457:-] 0.4834 161 7 -8.76 -0.6641 MIMAT0011787 dme-miR-2280* 35875 CG8272 agucaaucgaaccuuCAUUUAa |||||| gugguuaauguauuuGUAAAUa 2 8 594 615 [dm3:2R:4775927-4775948:-] 0.4875 120 6 -5.05 -0.2806 MIMAT0011789 dme-miR-2281 35875 CG8272 cguUAU-GACGUCUAUGUCUAu :|| :||:| ||| |||| aauGUAUUUGUAAAUAAAGAUc 2 19 600 621 [dm3:2R:4775921-4775942:-] 0.4875 129 0 -8.05 -0.1217 MIMAT0012196 dme-miR-2489 35875 CG8272 ugacGUUUAUGUUGUAUGU-UAu ||||||: ||||||| || uaguCAAAUAU-ACAUACAUAUa 2 19 153 174 [dm3:2R:4776368-4776389:-] 0.5110 136 0 -15.01 -1.1911 MIMAT0012202 dme-miR-2494* 35875 CG8272 aaggGU-UAGACCACGUGAAUg || || | ||||||||| uuugCAUAUAU-GUGCACUUAa 2 18 199 219 [dm3:2R:4776323-4776343:-] 0.5110 154 7 -14.32 -1.0948 MIMAT0012209 dme-miR-2497 35875 CG8272 gaCGUUUGUAACAUUUA-CAACa |:|: :|| ||||| |||| uaGUAGUUAU--UAAAUAGUUGa 2 21 434 454 [dm3:2R:4776088-4776108:-] 0.4158 121 0 -8.61 -1.2151 MIMAT0000106 dme-miR-2a 35875 CG8272 cgaguaguuucgaccGACACUAu ||||||| uuuguccgcauucaaCUGUGAUu 2 9 298 320 [dm3:2R:4776222-4776244:-] 0.4666 140 7 -13.20 -0.8534 MIMAT0000107 dme-miR-2b 35875 CG8272 cgaggaguuucgaccGACACUAu ||||||| uuuguccgcauucaaCUGUGAUu 2 9 298 320 [dm3:2R:4776222-4776244:-] 0.4666 140 7 -13.93 -0.8534 MIMAT0000109 dme-miR-4 35875 CG8272 aguUACCAACA-GAUCGAAAUa || ||||| ||||||| gcuAUAGUUGUGAAAGCUUUAg 2 19 134 155 [dm3:2R:4776387-4776408:-] 0.5110 157 7 -11.83 -0.6558 MIMAT0000109 dme-miR-4 35875 CG8272 agUUACCAACAGAUCGAAAUa | | || | ||||||| ucACUUCUUAU-AAGCUUUAu 2 20 539 558 [dm3:2R:4775984-4776003:-] 0.4875 141 7 -7.88 -1.0938 MIMAT0000111 dme-miR-6 35875 CG8272 uuuuucuUGUCGG-UGACACUAu :|| :| |||||||| uuuguccGCAUUCAACUGUGAUu 2 16 298 320 [dm3:2R:4776222-4776244:-] 0.4666 150 7 -14.19 -0.8499 MIMAT0000116 dme-miR-11 35875 CG8272 cguuCUUGAGUCUGACACUAc | |:||| |||||||| guccGCAUUCA-ACUGUGAUu 2 18 301 320 [dm3:2R:4776222-4776241:-] 0.4666 159 7 -14.57 -0.8429 MIMAT0000118 dme-miR-13a 35875 CG8272 ugAGUAGUUUUA--CCGACACUAu |::|| : || ||||||| guUUGUCCGCAUUCAACUGUGAUu 2 21 297 320 [dm3:2R:4776222-4776245:-] 0.4666 143 7 -11.83 -0.8499 MIMAT0000119 dme-miR-13b 35875 CG8272 ugAGCAGUUUUA--CCGACACUAu |:||| : || ||||||| guUUGUCCGCAUUCAACUGUGAUu 2 21 297 320 [dm3:2R:4776222-4776245:-] 0.4666 147 7 -14.67 -0.8499 MIMAT0000341 dme-miR-279 35875 CG8272 aauuacucacaccuaGAUCAGu |||||| gcuguacaacuuccgCUAGUCa 2 8 45 66 [dm3:2R:4776476-4776497:-] 0.8446 120 6 -10.68 -0.1373 MIMAT0000347 dme-miR-283 35875 CG8272 ucuuAAUGGUCGACU-AUAAAu ||: : |:||| ||||| uuguUUGAUUGUUGAGUAUUUa 2 18 396 417 [dm3:2R:4776125-4776146:-] 0.4158 121 0 -8.37 -0.7042 MIMAT0000352 dme-miR-79 35875 CG8272 uacgaaaccauuagaUCGAAAu |||||| cugucacuucuuauaAGCUUUa 2 8 536 557 [dm3:2R:4775985-4776006:-] 0.4875 120 6 -7.56 -0.1584 MIMAT0000359 dme-miR-286 35875 CG8272 ucgugcucacaagccaGAUCAGu |||||| agcuguacaacuuccgCUAGUCa 2 8 44 66 [dm3:2R:4776476-4776498:-] 0.8446 120 6 -13.53 -0.1386 MIMAT0000399 dme-miR-308 35875 CG8272 gaGUGUCAUAUUAGGACACUAa |:|| | || ||||||| ucCGCA-UUCAA--CUGUGAUu 2 21 302 320 [dm3:2R:4776222-4776240:-] 0.4666 143 7 -13.31 -0.8153 MIMAT0000407 dme-miR-315 35875 CG8272 cgAAAGACUCGUUGUUAGUUUu ||| | | :|| :|||||| uaUUUGUAAAUAAAGAUCAAAa 2 21 604 625 [dm3:2R:4775917-4775938:-] 0.4875 148 6 -8.53 -0.6223 MIMAT0000411 dme-miR-2c 35875 CG8272 cggguaguuucgaccGACACUAu ||||||| uuuguccgcauucaaCUGUGAUu 2 9 298 320 [dm3:2R:4776222-4776244:-] 0.4666 140 7 -15.85 -0.8534 MIMAT0000412 dme-miR-iab-4-5p 35875 CG8272 aguccuauguaagucAUAUGCa |||||| acuucuuauaagcuuUAUACGa 2 8 541 562 [dm3:2R:4775980-4776001:-] 0.4875 120 6 -8.45 -0.1257 MIMAT0005467 dme-miR-190 35875 CG8272 guUGGUUCUUAUAGUUUGUAUAga ::||| ||| || |||||| uaGUCAAAUAUA-CAUACAUAUac 3 23 153 175 [dm3:2R:4776367-4776389:-] 0.5110 144 0 -13.05 -0.1308 MIMAT0005483 dme-miR-1002 35875 CG8272 agCGGGA-AACAUAGGUGAUGAAuu |:|:| ||| | :||||||| uuGUCUUGAUGU-UGUACUACUUuc 3 23 20 43 [dm3:2R:4776499-4776522:-] 0.8446 139 0 -17.83 -0.1010 MIMAT0005484 dme-miR-968 35875 CG8272 guugggaAAUUAC-CUAUGAUGAAu ||:||| :|||||||| cauugucUUGAUGUUGUACUACUUu 2 18 18 42 [dm3:2R:4776500-4776524:-] 0.8446 160 7 -15.73 -1.0853 MIMAT0005504 dme-miR-987 35875 CG8272 guaguuaggucugauaaAUGAAAu |||||| -----------------UACUUUg 2 8 1 7 [dm3:2R:4776535-4776541:-] 0.8446 120 6 -4.98 -0.1947 MIMAT0005504 dme-miR-987 35875 CG8272 guaguuaggucugauaaAUGAAAu |||||| uugucuugauguuguacUACUUUc 2 8 20 43 [dm3:2R:4776499-4776522:-] 0.8446 120 6 -6.37 -0.1283 MIMAT0005515 dme-miR-996 35875 CG8272 ucugcucguacuuuaGAUCAGu |||||| gcuguacaacuuccgCUAGUCa 2 8 45 66 [dm3:2R:4776476-4776497:-] 0.8446 120 6 -10.68 -0.1359 MIMAT0005023 dme-miR-1010 35875 CG8272 gaCGUUUACCUUGCUAUC--CACUUu |||: ||| :| |||| ||||| caGCAGCUGG-GCUAUAGUUGUGAAa 2 23 124 148 [dm3:2R:4776394-4776418:-] 0.4972 120 0 -18.35 -0.2160 MIMAT0005030 dme-miR-1017 35875 CG8272 ccuacucaaacccaucUCGAAAg |||||| acugucacuucuuauaAGCUUUa 2 8 535 557 [dm3:2R:4775985-4776007:-] 0.4875 120 6 -5.17 -0.1615

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8272 RAID00045158 dme-miR-iab-4-5p miRNA MIMAT0000412 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00151065 dme-miR-263b-5p miRNA MIMAT0000362 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00284400 dme-miR-2a-3p miRNA MIMAT0000106 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID00365515 dme-mir-13b-2 miRNA MI0000135 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00371054 dme-miR-1010-3p miRNA MIMAT0005023 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00398906 dme-miR-308-3p miRNA MIMAT0000399 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID00441478 dme-miR-1002-5p miRNA MIMAT0005483 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00451769 dme-miR-283-5p miRNA MIMAT0000347 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00504970 dme-mir-2a-2 miRNA MI0000118 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00541738 dme-miR-2b-3p miRNA MIMAT0000107 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID00548108 dme-mir-307a miRNA MI0000418 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00557830 dme-mir-13b-1 miRNA MI0000134 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00579040 dme-miR-11-3p miRNA MIMAT0000116 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID00689876 dme-mir-2a-1 miRNA MI0000117 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID00842440 dme-miR-279-3p miRNA MIMAT0000341 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID00895864 dme-miR-996-3p miRNA MIMAT0005515 CG8272 mRNA 35875 Prediction 0.2455 CG8272 RAID00984513 dme-mir-6-3 miRNA MI0000126 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01041901 dme-miR-961-5p miRNA MIMAT0005475 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01149929 dme-mir-6-2 miRNA MI0000125 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01348487 dme-mir-6-1 miRNA MI0000124 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01356086 dme-miR-33-5p miRNA MIMAT0000342 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01366952 dme-miR-992-3p miRNA MIMAT0005510 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID01807907 dme-miR-1017-3p miRNA MIMAT0005030 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID02186985 dme-miR-13a-3p miRNA MIMAT0000118 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID02423249 dme-miR-13b-3p miRNA MIMAT0000119 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID02481106 dme-miR-190-5p miRNA MIMAT0005467 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID02501777 dme-miR-79-3p miRNA MIMAT0000352 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID02733489 dme-mir-iab-4 miRNA MI0000432 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID02804976 dme-miR-4-3p miRNA MIMAT0000109 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID02856625 dme-miR-315-5p miRNA MIMAT0000407 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID02868514 dme-miR-6-3p miRNA MIMAT0000111 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID03169732 dme-mir-2b-2 miRNA MI0000120 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID03313880 dme-miR-987-5p miRNA MIMAT0005504 CG8272 mRNA 35875 Prediction 0.1828 CG8272 RAID03408940 dme-miR-968-5p miRNA MIMAT0005484 CG8272 mRNA 35875 Prediction 0.2202 CG8272 RAID03473694 dme-miR-286-3p miRNA MIMAT0000359 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID03558888 dme-miR-2c-3p miRNA MIMAT0000411 CG8272 mRNA 35875 Prediction 0.2381 CG8272 RAID03859780 dme-mir-2b-1 miRNA MI0000119 CG8272 mRNA 35875 Prediction 0.1828