DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 36084 CAP gccccgcucucUUACUAUUcc | |||||| ggauaauuacuAUUGAUAAuu 3 11 562 582 [dm3:2R:6194380-6194400:+] 0.6055 122 0 -2.51 -0.1263 MIMAT0000364 dme-miR-289 36084 CAP ucagcguccgaggugaauuUAUAAAu |||||| uaaaacgaaaccgaaaauuAUAUUUa 2 8 212 237 [dm3:2R:6173317-6173342:+] 0.5393 120 6 -9.91 -0.1832 MIMAT0000394 dme-miR-306* 36084 CAP cguguccgugucucACUGGGGg ||||||| caaaccgaaugcuuUGACCCCu 2 9 16 37 [dm3:2R:6173121-6173142:+] 0.5123 140 7 -14.98 -0.8633 MIMAT0005491 dme-miR-975 36084 CAP uauguccuACAUCCUUCACAAau | || |||||| ccgaaaauUAUAUUUAGUGUUgu 3 16 222 244 [dm3:2R:6173327-6173349:+] 0.5393 123 0 -4.91 -0.1967 MIMAT0005494 dme-miR-978 36084 CAP gacGUUAAA-UGCCGUGACCUGu ::|||| :: :||||||: cucUGAUUUGGUUUUACUGGAUu 2 20 119 141 [dm3:2R:6193937-6193959:+] 0.6055 134 0 -16.66 -0.1102 MIMAT0005499 dme-miR-983 36084 CAP aguaauCAAGCUUUGCA-UAAUa ||| ||:||| |||| gacacuGUUGCAAGCGUAAUUAg 2 17 665 687 [dm3:2R:6194483-6194505:+] 0.6055 124 0 -9.56 -0.9151 MIMAT0005500 dme-miR-984 36084 CAP uuuaagguuGGCA-UAAAUGGAgu ::|| :||||||| auauguacuUUGUCGUUUACCUac 3 15 375 398 [dm3:2R:6194193-6194216:+] 0.6055 129 0 -12.11 -0.1517 MIMAT0005502 dme-miR-985 36084 CAP acgggcUGGUAAC-CUUGUAAac | ::||| |||||| uuguuaAAUGUUGAAAACAUUga 3 17 166 188 [dm3:2R:6173271-6173293:+] 0.5393 127 0 -7.36 -0.2988 MIMAT0005521 dme-miR-1001 36084 CAP acUAGGAACCCUCAAAUGGGu :| ||| | |||||||: auGUACUUUGUCGUUUACCUa 2 20 377 397 [dm3:2R:6194195-6194215:+] 0.6055 143 0 -16.47 -0.1034 MIMAT0005025 dme-miR-1012 36084 CAP gauaccccUUUUAGA--AACUGAUu :||||:| |||||| uuaaaguuGAAAUUUAAAUGACUAa 2 16 478 502 [dm3:2R:6194296-6194320:+] 0.6055 122 6 -9.70 -0.4090 MIMAT0011784 dme-miR-2279* 36084 CAP uuAAAGUGUGUGUCUAUAAAUu |||:| | :| |||||| uaUUUUAAAGCUAUUUAUUUAu 2 21 201 222 [dm3:2R:6194019-6194040:+] 0.6055 128 6 -5.12 -0.2284 MIMAT0011784 dme-miR-2279* 36084 CAP uuaaagugugugucUAUAAAUu ||||||| cgaaaccgaaaauuAUAUUUAg 2 9 217 238 [dm3:2R:6173322-6173343:+] 0.5393 140 7 -5.34 -1.0973 MIMAT0011784 dme-miR-2279* 36084 CAP uuaaagugugugucUAUAAAUu ||:|||| uuuaguguuguuuaAUGUUUAa 2 9 234 255 [dm3:2R:6173339-6173360:+] 0.5393 124 0 -4.01 -0.1168 MIMAT0011787 dme-miR-2280* 36084 CAP agucaaucgaaccuUCAUUUAa ||||||| uugcaagcguaauuAGUAAAUa 2 9 672 693 [dm3:2R:6194490-6194511:+] 0.6055 140 7 -7.96 -1.2342 MIMAT0011791 dme-miR-2283 36084 CAP uaacagcAUAAGUACUAUAAAAg ||||:|| |||||| uuaaagcUAUUUAU-UUAUUUUu 2 17 205 226 [dm3:2R:6194023-6194044:+] 0.6055 130 6 -6.88 -0.1228 MIMAT0011791 dme-miR-2283 36084 CAP uaacagcauaaguacuAUAAAAg |||||| uuugguuuuacuggauUAUUUUa 2 8 125 147 [dm3:2R:6193943-6193965:+] 0.6055 120 6 -4.23 -0.1466 MIMAT0011791 dme-miR-2283 36084 CAP uaacagcauaagUACUAUAAAag || |||||| acgaaaccgaaaAUUAUAUUUag 3 12 216 238 [dm3:2R:6173321-6173343:+] 0.5393 127 0 -2.24 -0.1112 MIMAT0012196 dme-miR-2489 36084 CAP ugACGUUUAUGUUGUAUGUUau | :||| | :|||||| auUUUAAAAAAUCUAUACAAaa 3 21 628 649 [dm3:2R:6194446-6194467:+] 0.6055 132 0 -4.65 -0.2180 MIMAT0012196 dme-miR-2489 36084 CAP ugacguuUAUGU-UGUAUGU-UAu ||||| ||||||| || uaagaucAUACAUACAUACAUAUg 2 16 356 379 [dm3:2R:6194174-6194197:+] 0.6055 130 0 -12.34 -1.1029 MIMAT0012196 dme-miR-2489 36084 CAP ugACGUUUAUGUUGUAU-GUUAu | | ||||| |||| |||| aaUUCUAAUAC--CAUAGCAAUa 2 21 193 213 [dm3:2R:6173298-6173318:+] 0.5393 125 0 -8.93 -1.2442 MIMAT0012199 dme-miR-2492 36084 CAP aaacuuucgagagcugUUUUGUa |||||| acuuuguuaaauguugAAAACAu 2 8 163 185 [dm3:2R:6173268-6173290:+] 0.5393 120 6 -8.36 -0.1624 MIMAT0012204 dme-miR-2495 36084 CAP ucaguCGGGU-UAACUUCACGGu ||: | ||| ||||||| aaaguGCUAAGAUUCAAGUGCCc 2 18 521 543 [dm3:2R:6194339-6194361:+] 0.6055 156 7 -14.11 -0.5502 MIMAT0012204 dme-miR-2495 36084 CAP ucaGUCGGGUUAACUUCACGGu | |:: || | ||||||| agaCCGUUGAACUAAAGUGCCu 2 20 457 478 [dm3:2R:6194275-6194296:+] 0.6055 155 7 -15.17 -1.2166 MIMAT0012204 dme-miR-2495 36084 CAP ucagucggguuaacUUCACGGu ||||||: uauaaaauguuucaAAGUGCUa 2 9 508 529 [dm3:2R:6194326-6194347:+] 0.6055 124 0 -10.18 -0.1228 MIMAT0012209 dme-miR-2497 36084 CAP gaCGU--UUGUAACAUUUACAACa ||| ||: || | ||||||| gaGCAUUAAUUUUAUCAAUGUUGg 2 21 232 255 [dm3:2R:6194050-6194073:+] 0.6055 159 7 -9.65 -0.9639 MIMAT0012209 dme-miR-2497 36084 CAP gacgUUUGUAACA-UUUACAAca ||||: | | ||||||| acuaAAACGAUAUAAAAUGUUuc 3 19 498 520 [dm3:2R:6194316-6194338:+] 0.6055 141 0 -7.79 -0.1635 MIMAT0012209 dme-miR-2497 36084 CAP gacgUUUGUAAC-AUUUACAACa |||| ||| ||||||||| ugugAAACUUUGUUAAAUGUUGa 2 19 157 179 [dm3:2R:6173262-6173284:+] 0.5393 173 7 -15.25 -1.2810 MIMAT0012215 dme-miR-2500 36084 CAP gacuccAGGUGUGUGUUUUAGg ||:|:|| |||||| aaaaaaUCUAUAC-AAAAAUCg 2 17 633 653 [dm3:2R:6194451-6194471:+] 0.6055 126 6 -12.79 -0.1665 MIMAT0012215 dme-miR-2500 36084 CAP gacuccagGUGUGU-GUUU-UAGg |||||| |||| ||| aacacacaCACACACCAAAUAUCg 2 15 320 343 [dm3:2R:6194138-6194161:+] 0.6055 125 0 -14.98 -0.6557 MIMAT0012215 dme-miR-2500 36084 CAP gacuccaggugugugUUUUAGg |||||| cagaaaccauuuuaaAAAAUCu 2 8 620 641 [dm3:2R:6194438-6194459:+] 0.6055 120 6 -10.05 -0.2258 MIMAT0012531 dme-miR-10-3p 36084 CAP uuuggaGAGAUCUUGGCUUAAAc :|: | || |||| || uuaaugUUUAAUAAACGAAAUUa 2 18 245 267 [dm3:2R:6173350-6173372:+] 0.5393 121 0 -4.40 -0.1265 MIMAT0000319 dme-miR-263a 36084 CAP cacuUAAGAAGGUCAC-GGUAAUUg |||:|| | | |||||| auuuAUUUUUAAACAGAGCAUUAAu 2 21 217 241 [dm3:2R:6194035-6194059:+] 0.6055 123 6 -11.66 -0.3016 MIMAT0000341 dme-miR-279 36084 CAP aauuacucacaccuaGAUCAGu |||||| accuacuaauuuuaaCUAGUCa 2 8 393 414 [dm3:2R:6194211-6194232:+] 0.6055 120 6 -10.69 -0.2116 MIMAT0000346 dme-miR-282 36084 CAP ugUCUGUUUCGGAUCAUCUC-CGA-UCUAa | |:||| : | | || ||| |||| cgAUAUAAAAUGUUUCAAAGUGCUAAGAUu 2 27 505 534 [dm3:2R:6194323-6194352:+] 0.6055 121 0 -9.74 -0.5906 MIMAT0000347 dme-miR-283 36084 CAP ucuuaauggucgacUAUAAAu |||||| cgaaaccgaaaauuAUAUUUa 2 8 217 237 [dm3:2R:6173322-6173342:+] 0.5393 120 6 -7.28 -0.1798 MIMAT0000351 dme-miR-124 36084 CAP gaaccGUAAGUGG--CGCACGGAAu |:|| | | ||||||| gagacCGUUGAACUAAAGUGCCUUa 2 19 456 480 [dm3:2R:6194274-6194298:+] 0.6055 141 7 -17.18 -1.2966 MIMAT0000359 dme-miR-286 36084 CAP ucgugcucacaagccaGAUCAGu |||||| uaccuacuaauuuuaaCUAGUCa 2 8 392 414 [dm3:2R:6194210-6194232:+] 0.6055 120 6 -13.15 -0.2096 MIMAT0000407 dme-miR-315 36084 CAP cgaaagacucguUGUUAGUUUu |:||||||| agcucauguuauAUAAUCAAAu 2 11 102 123 [dm3:2R:6173207-6173228:+] 0.5258 146 7 -11.82 -1.1961 MIMAT0005476 dme-miR-962 36084 CAP cugucguaguuaaagagaUGGAAUa |||||| cacaccaaauaucgaaggACCUUAa 2 8 330 354 [dm3:2R:6194148-6194172:+] 0.6055 120 6 -9.80 -0.2065 MIMAT0005478 dme-miR-964 36084 CAP uucaauucgaggggaUAAGAUu |||||| aaaacauugaaaauaAUUCUAa 2 8 179 200 [dm3:2R:6173284-6173305:+] 0.5393 120 6 -5.49 -0.3254 MIMAT0005479 dme-miR-932 36084 CAP gacguUACGUGAU-GCCUUAAcu || || |: :|||||| auuuuAU-CAAUGUUGGAAUUac 3 18 240 261 [dm3:2R:6194058-6194079:+] 0.6055 126 0 -11.58 -0.1467 MIMAT0005487 dme-miR-971 36084 CAP agugacauucuucauUGUGGUu |||||| cuccaacacacacacACACCAa 2 8 316 337 [dm3:2R:6194134-6194155:+] 0.6055 120 6 -10.42 -0.1277 MIMAT0005492 dme-miR-976 36084 CAP cgUAACUACUAUU--GAUUA-GGUu ||||| |||| ||||| ||| acAUUGAAAAUAAUUCUAAUACCAu 2 21 182 206 [dm3:2R:6173287-6173311:+] 0.5393 135 0 -15.31 -1.1387 MIMAT0005492 dme-miR-976 36084 CAP cguaACUACUAUUGAUUAGGUu | ||| || ||||| | cagcUCAUGUUAUAUAAUCAAa 2 19 101 122 [dm3:2R:6173206-6173227:+] 0.5258 126 0 -5.86 -0.1084 MIMAT0005501 dme-miR-927 36084 CAP ccauuucgcauccUUAAGAUUu |||||||| aaacauugaaaauAAUUCUAAu 2 10 180 201 [dm3:2R:6173285-6173306:+] 0.5393 145 7 -5.40 -1.1939 MIMAT0005507 dme-miR-137 36084 CAP gaugcacauaagaguUCGUUAu |||||| uaauucuaauaccauAGCAAUa 2 8 192 213 [dm3:2R:6173297-6173318:+] 0.5393 120 6 -9.85 -0.2673 MIMAT0005515 dme-miR-996 36084 CAP ucugcucguacuuuaGAUCAGu |||||| accuacuaauuuuaaCUAGUCa 2 8 393 414 [dm3:2R:6194211-6194232:+] 0.6055 120 6 -10.69 -0.2135 MIMAT0005019 dme-miR-1006 36084 CAP gaUACUUAUUCUUUAGCUUAAAu ||| ||| ||| |||| || uaAUGUUUAAUAAA-CGAAAUUa 2 22 246 267 [dm3:2R:6173351-6173372:+] 0.5393 135 0 -8.48 -0.1160 MIMAT0005027 dme-miR-1014 36084 CAP gacGUUUACUUUUACUUAAAa | ||| ||||||||| ugcCUAAUCUUAAUGAAUUUg 2 19 42 62 [dm3:2R:6193860-6193880:+] 0.6055 158 7 -8.41 -0.8261

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CAP RAID00069516 dme-miR-964-5p miRNA MIMAT0005478 CAP mRNA 36084 Prediction 0.1828 CAP RAID00231736 dme-bantam-3p miRNA MIMAT0000365 CAP mRNA 36084 Prediction 0.1828 CAP RAID00271514 dme-miR-283-5p miRNA MIMAT0000347 CAP mRNA 36084 Prediction 0.1828 CAP RAID00693606 dme-miR-282-5p miRNA MIMAT0000346 CAP mRNA 36084 Prediction 0.1828 CAP RAID00741940 dme-miR-315-5p miRNA MIMAT0000407 CAP mRNA 36084 Prediction 0.1828 CAP RAID00756858 dme-miR-124-3p miRNA MIMAT0000351 CAP mRNA 36084 Prediction 0.2455 CAP RAID00911268 dme-miR-962-5p miRNA MIMAT0005476 CAP mRNA 36084 Prediction 0.1828 CAP RAID00928709 dme-miR-286-3p miRNA MIMAT0000359 CAP mRNA 36084 Prediction 0.2202 CAP RAID01191907 dme-miR-10-3p miRNA MIMAT0012531 CAP mRNA 36084 Prediction 0.1828 CAP RAID01687920 dme-miR-279-3p miRNA MIMAT0000341 CAP mRNA 36084 Prediction 0.2202 CAP RAID01944181 dme-miR-2495-5p miRNA MIMAT0012204 CAP mRNA 36084 Prediction 0.1828 CAP RAID02359181 dme-miR-137-3p miRNA MIMAT0005507 CAP mRNA 36084 Prediction 0.1828 CAP RAID02377866 dme-miR-932-5p miRNA MIMAT0005479 CAP mRNA 36084 Prediction 0.1828 CAP RAID02472070 dme-miR-263b-5p miRNA MIMAT0000362 CAP mRNA 36084 Prediction 0.1828 CAP RAID02866674 dme-miR-996-3p miRNA MIMAT0005515 CAP mRNA 36084 Prediction 0.2381 CAP RAID03301294 dme-miR-927-5p miRNA MIMAT0005501 CAP mRNA 36084 Prediction 0.1828 CAP RAID03587587 dme-miR-971-3p miRNA MIMAT0005487 CAP mRNA 36084 Prediction 0.1828 CAP RAID03658940 dme-miR-976-3p miRNA MIMAT0005492 CAP mRNA 36084 Prediction 0.1828 CAP RAID03739682 dme-miR-1006-3p miRNA MIMAT0005019 CAP mRNA 36084 Prediction 0.1828 CAP RAID03740934 dme-miR-1014-3p miRNA MIMAT0005027 CAP mRNA 36084 Prediction 0.2202 CAP RAID03924805 dme-miR-263a-5p miRNA MIMAT0000319 CAP mRNA 36084 Prediction 0.1828