DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36129 CG7220 auAGUAAAGUAUACGUUGCAU-UUAUGu || || :|| ||: |: || ||||| ucUC-UUGUAUUUGU-AUUUAGAAUACa 2 26 1033 1058 [dm3:2R:6625908-6625933:+] 0.4356 125 0 -9.12 -0.9962 MIMAT0000364 dme-miR-289 36129 CG7220 ucagcguccgAGGUGAAUUUAUAAAu | | : ||||||||| ugucuauaaaUGCCUAUAAAUAUUUa 2 17 932 957 [dm3:2R:6625807-6625832:+] 0.5545 152 7 -10.82 -1.1867 MIMAT0005464 dme-miR-iab-4as-3p 36129 CG7220 auuugcAUAUGACUUAC-AUAGg || |:| |||| |||| uaugucUAAAUUAAAUGUUAUCc 2 17 376 398 [dm3:2R:6625251-6625273:+] 0.5941 124 0 -11.09 -1.1568 MIMAT0005465 dme-miR-954 36129 CG7220 ugUGUGUUGC-GUUGU-GGGUCu ||||| || | || ||||| acACACAUCGCCUCCAUCCCAGc 2 20 533 555 [dm3:2R:6625408-6625430:+] 0.5101 126 0 -25.12 -0.6884 MIMAT0005489 dme-miR-973 36129 CG7220 uuuuagcuucaaguugguGGUUGGu |||||| auuguuugcuuugcgcauCCAACCa 2 8 32 56 [dm3:2R:6624907-6624931:+] 0.5474 120 6 -14.64 -0.1499 MIMAT0005491 dme-miR-975 36129 CG7220 uauguccuACAUCCUUCACAAAu | |:|| ||||||| gagaaacuUAUGGGUAGUGUUUg 2 16 234 256 [dm3:2R:6625109-6625131:+] 0.5177 155 7 -14.15 -0.2426 MIMAT0005500 dme-miR-984 36129 CG7220 uuUAAGGU-UGGCAUAAAUGGAGu || || | | ||||||||| cgAUCGCAGAACACAUUUACCUCu 2 22 789 812 [dm3:2R:6625664-6625687:+] 0.5323 156 7 -15.99 -0.5678 MIMAT0005502 dme-miR-985 36129 CG7220 acgggcuggUAACCUUGUAAAc || ||||||| uauuauuaaAUGUUAACAUUUu 2 14 331 352 [dm3:2R:6625206-6625227:+] 0.5941 141 7 -5.34 -1.1594 MIMAT0005502 dme-miR-985 36129 CG7220 acGGGCUGGUAACCU-UGUAAAc |||||:|: | | |||||| ggCCCGAUCGCAGAACACAUUUa 2 21 785 807 [dm3:2R:6625660-6625682:+] 0.5323 132 6 -22.64 -0.3790 MIMAT0005022 dme-miR-1009 36129 CG7220 gacuuuacaUUGU-UAAAAACUcu ||:| |||||||| gccaacaacAAUAUAUUUUUGAau 3 15 1208 1231 [dm3:2R:6626083-6626106:+] 0.4369 137 0 -5.58 -0.1480 MIMAT0011784 dme-miR-2279* 36129 CG7220 uuaaaGUGUGUGUCUAUAAAUu ::| :|:| ||||||| auaaaUGCCUAUAAAUAUUUAc 2 18 937 958 [dm3:2R:6625812-6625833:+] 0.5545 153 7 -4.92 -0.9681 MIMAT0011784 dme-miR-2279* 36129 CG7220 uuaAAGUG--UGUGUCUAUAAAUu ||:|| :| | :|||||| auaUUUACUGUUAAAAGUAUUUAa 2 20 951 974 [dm3:2R:6625826-6625849:+] 0.5545 134 6 -7.23 -0.3336 MIMAT0011786 dme-miR-2280 36129 CG7220 uauaaaaUAACGGUUCGAUUCu || :|||||||| uaucaaaAUGAAUAAGCUAAGu 2 16 1088 1109 [dm3:2R:6625963-6625984:+] 0.4149 147 7 -12.53 -0.9196 MIMAT0011787 dme-miR-2280* 36129 CG7220 agucaaucgaaccUUCAUUUAa |||||||| guaaugugcaacaAAGUAAAUg 2 10 204 225 [dm3:2R:6625079-6625100:+] 0.5177 145 7 -5.57 -0.4346 MIMAT0011791 dme-miR-2283 36129 CG7220 uaacagcauaaGUACUAUAAAAg || ||||||| guagccaacaaCAAUAUAUUUUu 2 13 1205 1227 [dm3:2R:6626080-6626102:+] 0.4369 144 7 -4.21 -1.0116 MIMAT0012199 dme-miR-2492 36129 CG7220 aaacuuucgagagcugUUUUGUa |||||| aaaaaaaaaaaaaaaaAAAACAc 2 8 59 81 [dm3:2R:6624934-6624956:+] 0.5474 120 6 -2.60 -0.1073 MIMAT0012201 dme-miR-2493 36129 CG7220 ugcgGAGCGUGUUUAU-GUGUGCc ||||: |:| || |||||| gcuaCUCGUCCGACUAUCACACGa 2 20 844 867 [dm3:2R:6625719-6625742:+] 0.5545 135 6 -20.34 -0.9703 MIMAT0012209 dme-miR-2497 36129 CG7220 gacgUUUG-UAA-CAUUUACAAca |||| ||| |||||||| cgaaAAACUAUUAUUAAAUGUUaa 3 19 323 346 [dm3:2R:6625198-6625221:+] 0.5815 144 0 -6.47 -0.1619 MIMAT0012213 dme-miR-2499 36129 CG7220 augccugcACUUAC-AGUAGG-CGUa || ||| |:|||| ||| aaauccaaUGUAUGUUUAUCCAGCAu 2 17 905 930 [dm3:2R:6625780-6625805:+] 0.5545 123 0 -15.60 -1.0349 MIMAT0012216 dme-miR-2501 36129 CG7220 aaucggguccgugaggUUUGAAUg ||||||| aaaugaaguuagcgagAAACUUAu 2 9 221 244 [dm3:2R:6625096-6625119:+] 0.5177 140 7 -11.10 -0.1647 MIMAT0000105 dme-miR-1 36129 CG7220 gaGGU--AUGAAGAA-AUGUAAGGu ||| |:|| ||| ||||||| cgCCAGUUGCUGCUUCCACAUUCCa 2 21 459 483 [dm3:2R:6625334-6625358:+] 0.5332 158 7 -20.06 -0.3234 MIMAT0000113 dme-miR-8 36129 CG7220 cugUAGAAAUG--GACUGUCAUAAu || ||||| :| | |||||| uaaAUAUUUACUGUUAAAAGUAUUu 2 21 948 972 [dm3:2R:6625823-6625847:+] 0.5545 135 6 -10.61 -0.1125 MIMAT0000114 dme-miR-9a 36129 CG7220 agUAUGUCGAUCUAU--UGGUUUcu || :|| | | || |||||| uaAU-UAGAUUGUUAAGACCAAAuu 3 22 352 375 [dm3:2R:6625227-6625250:+] 0.5941 130 0 -8.96 -0.1074 MIMAT0000114 dme-miR-9a 36129 CG7220 aguaugucgaucuaUUGGUUUcu ||||||| ugcuuugcgcauccAACCAAAaa 3 10 38 60 [dm3:2R:6624913-6624935:+] 0.5474 125 0 -7.66 -0.1124 MIMAT0000319 dme-miR-263a 36129 CG7220 cacuuaagaaggUCACGGUAAUUg | ||||||| | -------uuaaaAUUGCCAUUUAc 2 13 1 17 [dm3:2R:6624876-6624892:+] 0.5474 120 0 -10.31 -0.1017 MIMAT0000338 dme-miR-277 36129 CG7220 acAGCAU--GGUCUAUCAC-GUAAAu || || : |||| || ||||| gaUCAUAGUUAAGAUUAUGACAUUUu 2 22 608 633 [dm3:2R:6625483-6625508:+] 0.5101 120 0 -9.01 -0.9104 MIMAT0000347 dme-miR-283 36129 CG7220 ucUUAAUGGUCGACUAUAAAu || |:|| : |||||| auAAAUGCCUAUAAAUAUUUa 2 20 937 957 [dm3:2R:6625812-6625832:+] 0.5545 123 6 -7.58 -0.1171 MIMAT0000365 dme-bantam 36129 CG7220 uuAGUCGAA---AGUUUUACUAGAGu || |:|| ||| ||||||| uuUCUGUUUGGCUCAUUUUGAUCUCu 2 22 1012 1037 [dm3:2R:6625887-6625912:+] 0.4356 152 7 -14.10 -0.6311 MIMAT0000392 dme-miR-9c 36129 CG7220 agauGUCGAUC--UUAUGGUUUcu :|| | | || |||||| uaauUAGAUUGUUAAGACCAAAuu 3 19 352 375 [dm3:2R:6625227-6625250:+] 0.5941 129 0 -7.61 -0.1074 MIMAT0000392 dme-miR-9c 36129 CG7220 agaugucgaucuuaUGGUUUcu |||||| gcuuugcgcauccaACCAAAaa 3 9 39 60 [dm3:2R:6624914-6624935:+] 0.5474 120 0 -7.99 -0.1124 MIMAT0000395 dme-miR-9b 36129 CG7220 guaugucgauuuUAG--UGGUUUcu ||| |||||| uuugcuuugcgcAUCCAACCAAAaa 3 12 36 60 [dm3:2R:6624911-6624935:+] 0.5474 122 0 -7.42 -0.1113 MIMAT0005478 dme-miR-964 36129 CG7220 uucaauucgagggGAUAAGAUu :||||||| uugcaaaugaaagUUAUUCUAa 2 10 1114 1135 [dm3:2R:6625989-6626010:+] 0.4149 141 7 -8.34 -1.0471 MIMAT0005487 dme-miR-971 36129 CG7220 agugacaUUCUUCAUUGUGGUu || || ||||||| aaaaaaaAAAAAAAAACACCAu 2 16 63 84 [dm3:2R:6624938-6624959:+] 0.5474 151 7 -9.16 -1.2042 MIMAT0005492 dme-miR-976 36129 CG7220 cguaacuacuauugaUUAGGUu |||||| auaaagagcaaguuaAAUCCAa 2 8 891 912 [dm3:2R:6625766-6625787:+] 0.5545 120 6 -8.86 -0.1476 MIMAT0005501 dme-miR-927 36129 CG7220 ccaUUUCGCAUCCUUAAGAUUu ||| || ||||||| ugcAAAUGAAAGUUAUUCUAAu 2 20 1115 1136 [dm3:2R:6625990-6626011:+] 0.4149 147 7 -6.80 -0.8965 MIMAT0005501 dme-miR-927 36129 CG7220 ccauuucgcauccUUAAGAUUu |||||||| ggcgcaugcaaacAAUUCUAAu 2 10 269 290 [dm3:2R:6625144-6625165:+] 0.5689 145 7 -8.26 -0.6951 MIMAT0005506 dme-miR-989 36129 CG7220 caaGGUGAUGCAG--UG-UAGUGu |:||| |||| || ||||| gagCUACU-CGUCCGACUAUCACa 2 19 842 864 [dm3:2R:6625717-6625739:+] 0.5545 123 0 -20.80 -0.4909 MIMAT0005519 dme-miR-999 36129 CG7220 ucUGUGU-CAG-AAUGUCAAUUGu :||:| ||| ||| ||||||| auGCAUAGGUCGUUA-AGUUAACc 2 21 710 732 [dm3:2R:6625585-6625607:+] 0.5101 160 7 -15.25 -0.3740 MIMAT0005519 dme-miR-999 36129 CG7220 ucUGUG-UCAGAAUGU-CAAUUGu | || | | ||| | |||||| aaAAACUAUUAUUAAAUGUUAACa 2 21 325 348 [dm3:2R:6625200-6625223:+] 0.5815 123 6 -8.23 -1.3006

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7220 RAID00210072 dme-miR-984-5p miRNA MIMAT0005500 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID00376080 dme-miR-999-3p miRNA MIMAT0005519 CG7220 mRNA 36129 Prediction 0.2381 CG7220 RAID00541011 dme-miR-989-3p miRNA MIMAT0005506 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID00552844 dme-miR-966-5p miRNA MIMAT0005481 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID00666398 dme-miR-283-5p miRNA MIMAT0000347 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID01007509 dme-miR-9b-5p miRNA MIMAT0000395 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID01622028 dme-miR-124-3p miRNA MIMAT0000351 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID01729755 dme-miR-927-5p miRNA MIMAT0005501 CG7220 mRNA 36129 Prediction 0.2202 CG7220 RAID01861631 dme-miR-9a-5p miRNA MIMAT0000114 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID02094752 dme-miR-964-5p miRNA MIMAT0005478 CG7220 mRNA 36129 Prediction 0.2202 CG7220 RAID02533185 dme-miR-277-3p miRNA MIMAT0000338 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID02592021 dme-miR-137-3p miRNA MIMAT0005507 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03027641 dme-miR-315-5p miRNA MIMAT0000407 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03159110 dme-miR-971-3p miRNA MIMAT0005487 CG7220 mRNA 36129 Prediction 0.2202 CG7220 RAID03175601 dme-miR-973-5p miRNA MIMAT0005489 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03233262 dme-miR-975-5p miRNA MIMAT0005491 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03502445 dme-miR-9c-5p miRNA MIMAT0000392 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03537611 dme-miR-985-3p miRNA MIMAT0005502 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03547249 dme-miR-263a-5p miRNA MIMAT0000319 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03592157 dme-miR-8-3p miRNA MIMAT0000113 CG7220 mRNA 36129 Prediction 0.1828 CG7220 RAID03693031 dme-bantam-3p miRNA MIMAT0000365 CG7220 mRNA 36129 Prediction 0.2202 CG7220 RAID03727537 dme-miR-1-3p miRNA MIMAT0000105 CG7220 mRNA 36129 Prediction 0.2381 CG7220 RAID04060468 dme-miR-976-3p miRNA MIMAT0005492 CG7220 mRNA 36129 Prediction 0.2202