DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36144 CG12325 auagUAAAGUAUACGUUGCAUUUAUGu :|| || || | | ||||||: agcaGUUACA-AUCCUAGAUAAAUAUa 2 24 208 233 [dm3:2R:6715092-6715117:+] 0.5504 141 0 -6.89 -0.1106 MIMAT0000343 dme-miR-280 36144 CG12325 auaguaaaGUAUACGUUGCAUU-UAUGu :|||||| |:|||| |||: uagauaaaUAUAUGC-AUGUAAUAUAUa 2 20 222 248 [dm3:2R:6715106-6715132:+] 0.5504 121 0 -16.28 -0.1520 MIMAT0000364 dme-miR-289 36144 CG12325 ucagcguccgaggugaaUUUAUAAAu |:|||||| aaaaauggaaagaauacAGAUAUUUa 2 10 163 188 [dm3:2R:6715047-6715072:+] 0.5504 129 6 -8.17 -0.4462 MIMAT0005502 dme-miR-985 36144 CG12325 acGGGCUGGUAAC-CUUG-UAAAc :| || ||||| ||| |||| -aUCGGAGCAUUGCCAACUAUUUc 2 21 1 23 [dm3:2R:6714885-6714907:+] 0.4615 127 0 -11.90 -0.8495 MIMAT0005509 dme-miR-991 36144 CG12325 ugAAAGGUUUGAUGUUGAAAuu | | :||||| :|||||| uuUAUAUAAACU-UAACUUUuu 3 21 185 205 [dm3:2R:6715069-6715089:+] 0.5504 142 0 -10.42 -0.1614 MIMAT0005026 dme-miR-1013 36144 CG12325 gcucaagccguaUGAAAAua |||||| uauauaaacuuaACUUUUua 3 9 187 206 [dm3:2R:6715071-6715090:+] 0.5504 120 0 -4.26 -0.2489 MIMAT0011784 dme-miR-2279* 36144 CG12325 uuaaagugUGUGUCUAUAAAUu |:||||||||||| uggaaagaAUACAGAUAUUUAu 2 15 168 189 [dm3:2R:6715052-6715073:+] 0.5504 166 7 -14.92 -1.0828 MIMAT0011788 dme-miR-2281* 36144 CG12325 aaCGUAGACGUCGACGUCUAUUa ||| :| || : :|||||| uaGCAGUUACAAUCCUAGAUAAa 2 22 207 229 [dm3:2R:6715091-6715113:+] 0.5504 141 6 -10.64 -0.1964 MIMAT0011788 dme-miR-2281* 36144 CG12325 aacguagacgucgACGUCUAUua | |||||| aaaauggaaagaaUACAGAUAuu 3 11 164 186 [dm3:2R:6715048-6715070:+] 0.5504 122 0 -9.31 -0.3306 MIMAT0011789 dme-miR-2281 36144 CG12325 cgUUAUGAC-GUC-UAUGUCUAu || |: | || |||||||| uaAAAAUGGAAAGAAUACAGAUa 2 20 162 184 [dm3:2R:6715046-6715068:+] 0.5504 149 7 -13.37 -1.3200 MIMAT0011791 dme-miR-2283 36144 CG12325 uaacagCAUAAGUACUAUAAAag | || || ||||||| uggaaaGAAUACA-GAUAUUUau 3 18 168 189 [dm3:2R:6715052-6715073:+] 0.5504 135 0 -5.84 -0.1322 MIMAT0012216 dme-miR-2501 36144 CG12325 aaucggGUCCGUGAG---GUUUGAAUg ||| :|:|: :||||||| agaauaCAGAUAUUUAUAUAAACUUAa 2 19 173 199 [dm3:2R:6715057-6715083:+] 0.5504 149 7 -13.39 -1.3190 MIMAT0012216 dme-miR-2501 36144 CG12325 aaUCGGGUC-CGUGAGGU-UUGAAUg |||: || | || || |||||| uuAGCUGAGUGAACAACAUAACUUAa 2 23 139 164 [dm3:2R:6715023-6715048:+] 0.5504 129 6 -16.19 -1.2397 MIMAT0000109 dme-miR-4 36144 CG12325 agUUACCAACAGAUCGAAAua ||| | | |||||| agAAUAAAUUUAAAGCUUUuc 3 20 85 105 [dm3:2R:6714969-6714989:+] 0.5504 127 0 -5.26 -0.1247 MIMAT0000335 dme-miR-219 36144 CG12325 guucuuaacgcaaaccUGUUAGu |||||| acuuuuuauagcaguuACAAUCc 2 8 199 221 [dm3:2R:6715083-6715105:+] 0.5504 120 6 -7.76 -0.1571 MIMAT0000346 dme-miR-282 36144 CG12325 ugucuguuucggaucaucuccGAUCUAa |||||| cuuuuuauagcaguuacaaucCUAGAUa 2 8 200 227 [dm3:2R:6715084-6715111:+] 0.5504 120 6 -11.64 -0.4854 MIMAT0000347 dme-miR-283 36144 CG12325 ucUUAAUGGUCGACUAUAAAu || | :| | ||||||| ggAAAGAAUA-CAGAUAUUUa 2 20 169 188 [dm3:2R:6715053-6715072:+] 0.5504 145 7 -9.98 -1.3045 MIMAT0000362 dme-miR-263b 36144 CG12325 cacuuaagagggucACGGUUc |||||| ----aucggagcauUGCCAAc 2 8 1 17 [dm3:2R:6714885-6714901:+] 0.5179 120 6 -8.90 -0.3128

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG12325 RAID01580580 dme-miR-263b-5p miRNA MIMAT0000362 CG12325 mRNA 36144 Prediction 0.1828 CG12325 RAID02018907 dme-miR-219-5p miRNA MIMAT0000335 CG12325 mRNA 36144 Prediction 0.1828 CG12325 RAID02740457 dme-miR-4-3p miRNA MIMAT0000109 CG12325 mRNA 36144 Prediction 0.1828 CG12325 RAID03019467 dme-miR-282-5p miRNA MIMAT0000346 CG12325 mRNA 36144 Prediction 0.1828 CG12325 RAID03487690 dme-miR-283-5p miRNA MIMAT0000347 CG12325 mRNA 36144 Prediction 0.1828