DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36199 CG9062 auaguaaaGUAUACGUU--GC-AUUUAUGu :||| | || :| ||||||: uacauaggUAUAAGAAAUCUGUUAAAUAUa 2 20 626 655 [dm3:2R:7168116-7168145:-] 0.5825 133 0 -9.53 -0.1085 MIMAT0005488 dme-miR-972 36199 CG9062 cggauuuauaagcauAACAUGu |||||| ucuaugcaagccaauUUGUACa 2 8 699 720 [dm3:2R:7168051-7168072:-] 0.5825 120 6 -9.11 -0.1228 MIMAT0005509 dme-miR-991 36199 CG9062 ugAAAGGUUUGAUGUUGAAAUu | | |:|:| :||||||| ucUGUACGAGCGUUAACUUUAa 2 21 351 372 [dm3:2R:7168399-7168420:-] 0.4906 156 7 -15.77 -1.0770 MIMAT0011784 dme-miR-2279* 36199 CG9062 uuaAAGUGUGUGUCUAUAAAUu ||:|:|||:| |||||| aggUUUAUACAUAAUUAUUUAc 2 20 596 617 [dm3:2R:7168154-7168175:-] 0.5825 143 6 -12.46 -0.1980 MIMAT0011784 dme-miR-2279* 36199 CG9062 uuaAAGUGUGUGUCUAUAAAuu || ||| |: |||||| cgaUUAACA-AUUUAUAUUUuu 3 20 234 254 [dm3:2R:7168517-7168537:-] 0.4930 133 0 -3.64 -0.1219 MIMAT0011789 dme-miR-2281 36199 CG9062 cguuAUGACGUCUAUGUCUau |::| | ||||||| aaucUGUUAAAUAUACAGAaa 3 18 641 661 [dm3:2R:7168110-7168130:-] 0.5825 133 0 -10.15 -0.2147 MIMAT0011791 dme-miR-2283 36199 CG9062 uaacAGCAUAA--GU--ACUAUAAAAg ||| ||| || | ||||||| cagaUCG-AUUAACAAUUUAUAUUUUu 2 20 229 254 [dm3:2R:7168517-7168542:-] 0.4930 147 7 -5.85 -1.1811 MIMAT0012196 dme-miR-2489 36199 CG9062 ugACGUUUAUGU-UG--UA-UGUUAu | ||:|| || || || ||||| acUUCAGAUUCAGACUUAUAACAAUu 2 21 431 456 [dm3:2R:7168315-7168340:-] 0.5050 122 0 -10.82 -0.5469 MIMAT0012199 dme-miR-2492 36199 CG9062 aaaCUU-UCGAGAGCUGUUU-UGUa ||| | || || ||||| ||| caaGAACACCUAUC-ACAAACACAa 2 21 24 47 [dm3:2R:7168724-7168747:-] 0.4719 125 0 -7.30 -0.5456 MIMAT0012199 dme-miR-2492 36199 CG9062 aaacuuucGAG-AGCUGUUU-UGUa ||| | |||||| ||| cgacucgaCUCGUGGACAAACACAa 2 16 310 334 [dm3:2R:7168437-7168461:-] 0.4846 122 0 -12.80 -0.4904 MIMAT0012201 dme-miR-2493 36199 CG9062 ugcggagcguguuuaUGUGUGCc ||||||| acaauuaggcuugcgACACACGu 2 9 451 473 [dm3:2R:7168298-7168320:-] 0.5050 140 7 -19.13 -0.3808 MIMAT0012201 dme-miR-2493 36199 CG9062 ugcGGAGCGUGUUUAUGUG-UGCc ||| ||||| |||| ||| acaCCUAUCACAA--ACACAACGc 2 21 29 50 [dm3:2R:7168721-7168742:-] 0.5226 125 0 -17.98 -1.0548 MIMAT0012215 dme-miR-2500 36199 CG9062 gacuccagGUGUGU-GUUUUAGg :|:||| |||||| cuguuaaaUAUACAGAAAAAUCa 2 15 644 666 [dm3:2R:7168105-7168127:-] 0.5825 121 6 -14.15 -0.1224 MIMAT0000319 dme-miR-263a 36199 CG9062 caCUUAAGAAGGUC---ACGGUAAUUg ||:| | ||| | ||||||| agGAGUAACUGCAGACAUACCAUUAAa 2 23 489 515 [dm3:2R:7168256-7168282:-] 0.5438 149 7 -13.30 -0.9736 MIMAT0000332 dme-miR-274 36199 CG9062 uaaugggcaaucacagccAGUGUUUu ||||||| acaacacaagaacaccuaUCACAAAc 2 9 18 43 [dm3:2R:7168728-7168753:-] 0.4719 140 7 -11.50 -0.6557 MIMAT0000334 dme-miR-92a 36199 CG9062 uauccggcccuguucACGUUAc |||||| uuuauaaguugauuuUGCAAUa 2 8 252 273 [dm3:2R:7168498-7168519:-] 0.4930 120 6 -6.01 -0.2029 MIMAT0000348 dme-miR-284 36199 CG9062 guuAACGA-CCUUAGUUCAACGAC-UGAAGu | |:| ||||| || | || ||||| uucUCGUUAGGAAUAAA--U-AUGUACUUCa 2 27 409 436 [dm3:2R:7168335-7168362:-] 0.5050 120 0 -14.59 -1.1106 MIMAT0000358 dme-miR-92b 36199 CG9062 cguccggcccugaucACGUUAa |||||| uuuauaaguugauuuUGCAAUa 2 8 252 273 [dm3:2R:7168498-7168519:-] 0.4930 120 6 -6.87 -0.2029 MIMAT0000402 dme-miR-310 36199 CG9062 uuuccggcccuucacACGUUAu |||||| uuuauaaguugauuuUGCAAUa 2 8 252 273 [dm3:2R:7168498-7168519:-] 0.4930 120 6 -8.18 -0.2029 MIMAT0000403 dme-miR-311 36199 CG9062 aguccggCCACUUACACGUUAu | ||| | |||||| uuuauaaGUUGAUUUUGCAAUa 2 16 252 273 [dm3:2R:7168498-7168519:-] 0.4930 127 6 -8.70 -0.1992 MIMAT0000404 dme-miR-312 36199 CG9062 aguccggcagaguucACGUUAu |||||| uuuauaaguugauuuUGCAAUa 2 8 252 273 [dm3:2R:7168498-7168519:-] 0.4930 120 6 -9.71 -0.2010 MIMAT0000405 dme-miR-313 36199 CG9062 agcccgacacuuuucACGUUAu |||||| uuuauaaguugauuuUGCAAUa 2 8 252 273 [dm3:2R:7168498-7168519:-] 0.4930 120 6 -8.74 -0.1992 MIMAT0000407 dme-miR-315 36199 CG9062 cgaaagacucguugUUAGUUuu |||||| uuaaauuauuuggaAAUCAA-- 3 9 770 789 [dm3:2R:7167982-7168001:-] 0.6107 120 0 -5.32 -0.1944 MIMAT0005516 dme-miR-252 36199 CG9062 gaggacgccgUGAU-CAUGAAuc | || |||||| guuaggaauaAAUAUGUACUUca 3 13 414 436 [dm3:2R:7168335-7168357:-] 0.5050 123 0 -6.61 -0.1065 MIMAT0005519 dme-miR-999 36199 CG9062 ucUGUGUCAGAAUGUCAAUUGu :|| | || ||||||| uuGCAAUAUAUUUGAGUUAACc 2 21 266 287 [dm3:2R:7168484-7168505:-] 0.4930 148 7 -8.48 -0.4283

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG9062 RAID00643189 dme-miR-999-3p miRNA MIMAT0005519 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID01042306 dme-mir-13b-1 miRNA MI0000134 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01069593 dme-miR-11-3p miRNA MIMAT0000116 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01148705 dme-mir-2a-1 miRNA MI0000117 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01288361 dme-miR-279-3p miRNA MIMAT0000341 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01389539 dme-miR-996-3p miRNA MIMAT0005515 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01577490 dme-miR-92b-3p miRNA MIMAT0000358 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID01770038 dme-miR-284-3p miRNA MIMAT0000348 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID01822036 dme-miR-33-5p miRNA MIMAT0000342 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID01848954 dme-miR-92a-3p miRNA MIMAT0000334 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID01973736 dme-miR-306-5p miRNA MIMAT0000393 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID02059011 dme-miR-991-3p miRNA MIMAT0005509 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID02092508 dme-miR-274-5p miRNA MIMAT0000332 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID02460465 dme-miR-310-3p miRNA MIMAT0000402 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID02753415 dme-miR-311-3p miRNA MIMAT0000403 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID03018271 dme-miR-312-3p miRNA MIMAT0000404 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID03281772 dme-miR-315-5p miRNA MIMAT0000407 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID03302842 dme-miR-313-3p miRNA MIMAT0000405 CG9062 mRNA 36199 Prediction 0.2202 CG9062 RAID03692161 dme-miR-972-3p miRNA MIMAT0005488 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID03801095 dme-miR-263a-5p miRNA MIMAT0000319 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID03953673 dme-bantam-3p miRNA MIMAT0000365 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID03960224 dme-miR-286-3p miRNA MIMAT0000359 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID03975981 dme-miR-252-5p miRNA MIMAT0005516 CG9062 mRNA 36199 Prediction 0.1828 CG9062 RAID04009201 dme-miR-1-3p miRNA MIMAT0000105 CG9062 mRNA 36199 Prediction 0.1828