DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 36241 tou ucagcguccgAGGUGAAUUUAUAAAu | :|: || |||||| cauuaauauaUAUAUAUAUAUAUUUa 2 17 284 309 [dm3:2R:7467023-7467048:-] 0.5081 124 6 -8.02 -0.2321 MIMAT0000364 dme-miR-289 36241 tou ucaGCGUCCGAGGUGAAUUUAUAAAu | ||| | ||| | ||||| | aagCACAGCAUACACAUUAAUAUAUa 2 24 270 295 [dm3:2R:7467037-7467062:-] 0.4977 135 0 -9.49 -0.1166 MIMAT0000364 dme-miR-289 36241 tou ucagcguccgAGGUGAAUUUAUAAAu | :|: || |||||| cauuaauauaUAUAUAUAUAUAUUUa 2 17 284 309 [dm3:2R:7467023-7467048:-] 0.5081 124 6 -8.02 -0.6140 MIMAT0005464 dme-miR-iab-4as-3p 36241 tou auUUGCAUAUGACUUACAUAGg ||: | |:| |||||||: caAAUUAAAAUUAAAUGUAUUa 2 21 909 930 [dm3:2R:7466402-7466423:-] 0.5143 144 0 -6.93 -0.6707 MIMAT0005488 dme-miR-972 36241 tou cgGAUUU-AUAAG-C-AUAACAUGu :||:| || | | ||||||| guUUAGAUUAAGCAGAGAUUGUACa 2 21 216 240 [dm3:2R:7467092-7467116:-] 0.4872 141 7 -14.19 -0.6908 MIMAT0005488 dme-miR-972 36241 tou cgGAUUU-AUAAG-C-AUAACAUGu :||:| || | | ||||||| guUUAGAUUAAGCAGAGAUUGUACa 2 21 216 240 [dm3:2R:7467092-7467116:-] 0.4872 141 7 -14.19 -0.8344 MIMAT0005499 dme-miR-983 36241 tou agUAAUCA-AGCUUUGCAUAAUa || || |: |||||||||| aaAUCUGUAUUUAAACGUAUUAu 2 21 798 820 [dm3:2R:7466512-7466534:-] 0.5081 163 7 -11.46 -1.0377 MIMAT0005499 dme-miR-983 36241 tou agUAAUCAAGCUUUGCAUAAUa |||| : |||:|||||| aaAUUAAAAUUAAAUGUAUUAa 2 21 910 931 [dm3:2R:7466401-7466422:-] 0.5143 148 6 -8.26 -0.6819 MIMAT0005509 dme-miR-991 36241 tou ugAAAGGUUUGAUGUUGA-AAUu | | :|||| |:|||| ||| agUAUAUAAACAAUAACUAUUAg 2 21 488 510 [dm3:2R:7466822-7466844:-] 0.5081 132 0 -10.09 -0.5186 MIMAT0011784 dme-miR-2279* 36241 tou uuaAAGUGUGUGUCUAUAAAUu | :|:|:|:| ||||||| auaUAUAUAUAUAUAUAUUUAu 2 20 289 310 [dm3:2R:7467022-7467043:-] 0.5081 163 7 -10.63 -1.1397 MIMAT0011784 dme-miR-2279* 36241 tou uuaAAGUGUGUGUCUAUAAAUu | :|:|:|:| ||||||| auaUAUAUAUAUAUAUAUUUAu 2 20 289 310 [dm3:2R:7467022-7467043:-] 0.5081 163 7 -10.63 -1.2739 MIMAT0011791 dme-miR-2283 36241 tou uaacagcAUAAGUACUAUAAAag ||| :|| |||||| auauauaUAUAUAU-AUAUUUau 3 17 289 310 [dm3:2R:7467022-7467043:-] 0.5081 134 0 -3.01 -0.2449 MIMAT0012196 dme-miR-2489 36241 tou ugacgUUUAUGUUGUAUGU-UAu ||: |||:|||||| || ucgagAAGCACAGCAUACACAUu 2 18 265 287 [dm3:2R:7467045-7467067:-] 0.4977 133 0 -13.37 -0.9190 MIMAT0012196 dme-miR-2489 36241 tou ugacgUUUAUGUUGUAUGU-UAu ||: |||:|||||| || ucgagAAGCACAGCAUACACAUu 2 18 265 287 [dm3:2R:7467045-7467067:-] 0.4977 133 0 -13.37 -1.0496 MIMAT0012198 dme-miR-2491 36241 tou ucGUUGACGUUUCC----GUUGUCGc || | || |||| ||||||| auCACCAGCCAAGGCGAACAACAGCg 2 21 400 425 [dm3:2R:7466907-7466932:-] 0.5081 155 7 -21.97 -0.2655 MIMAT0012198 dme-miR-2491 36241 tou ucGUUG--ACGUUU-CCGUUGUCGc ||:| || |:| | ||||||| ggCAGCCGUGGAGACGACAACAGCa 2 21 156 180 [dm3:2R:7467152-7467176:-] 0.4872 154 7 -19.99 -0.4633 MIMAT0012198 dme-miR-2491 36241 tou ucGUUG--ACGUUU-CCGUUGUCGc ||:| || |:| | ||||||| ggCAGCCGUGGAGACGACAACAGCa 2 21 156 180 [dm3:2R:7467152-7467176:-] 0.4872 154 7 -19.99 -0.5978 MIMAT0012201 dme-miR-2493 36241 tou ugcggagcGUGUUUAUGUGUGCc :|:||| ||||||| aguagauaUAUAAACACACACGc 2 16 315 337 [dm3:2R:7466995-7467017:-] 0.5081 159 7 -15.26 -0.3463 MIMAT0000113 dme-miR-8 36241 tou cuGUAGAAAUGGAC-UGUCAUAAu |||| || || |||||||| ucCAUCGUU---UGAACAGUAUUu 2 22 647 667 [dm3:2R:7466665-7466685:-] 0.5081 156 7 -16.03 -0.5002 MIMAT0000319 dme-miR-263a 36241 tou cacuuaagaaggucacgGUAAUUg |||||| gagaagcacagcauacaCAUUAAu 2 8 267 290 [dm3:2R:7467042-7467065:-] 0.4977 120 6 -8.94 -0.1020 MIMAT0000347 dme-miR-283 36241 tou ucuuaauggucgacUAUAAAu |||||| auauauauauauauAUAUUUa 2 8 289 309 [dm3:2R:7467023-7467043:-] 0.5081 120 6 -4.79 -0.2321 MIMAT0000347 dme-miR-283 36241 tou ucuuaauggucgacUAUAAAu |||||| auauauauauauauAUAUUUa 2 8 289 309 [dm3:2R:7467023-7467043:-] 0.5081 120 6 -4.79 -0.6140 MIMAT0000352 dme-miR-79 36241 tou uacGAAACCAUU--AGAUCGAAAu | |||| || ||||||| agaCCUUGGAAAGGGGUAGCUUUg 2 20 366 389 [dm3:2R:7466943-7466966:-] 0.5081 150 7 -12.64 -0.1127 MIMAT0005466 dme-miR-955 36241 tou cuGUGAGUU-UGG-AGACGUGCUAc :|| ||: ||| | ||||||| gcUAC-CAGCACCAGCAGCACGAUc 2 22 34 57 [dm3:2R:7467275-7467298:-] 0.4863 149 7 -17.11 -0.1576 MIMAT0005466 dme-miR-955 36241 tou cuGUGAGUU-UGG-AGACGUGCUAc :|| ||: ||| | ||||||| gcUAC-CAGCACCAGCAGCACGAUc 2 22 34 57 [dm3:2R:7467275-7467298:-] 0.4863 149 7 -17.11 -0.2250 MIMAT0005472 dme-miR-375 36241 tou auugaauUCGGUU-UGCUUGUUu |||||| :||||||| aaucaccAGCCAAGGCGAACAAc 2 16 399 421 [dm3:2R:7466911-7466933:-] 0.5081 162 7 -18.22 -0.2000 MIMAT0005472 dme-miR-375 36241 tou auugaaUUCGGUUU---GCUUGUUu |:|| ||| ||||||| uugcccAGGCAAAAAUGCGAACAAu 2 17 836 860 [dm3:2R:7466472-7466496:-] 0.5081 151 7 -13.05 -0.5876 MIMAT0005472 dme-miR-375 36241 tou auugaauuCGGU-UUGCUUGUUu |:|| | ||||||| gcaccaccGUCACACCGAACAAc 2 15 65 87 [dm3:2R:7467245-7467267:-] 0.4863 149 7 -10.98 -0.1054 MIMAT0005472 dme-miR-375 36241 tou auugaauuCGGU-UUGCUUGUUu |:|| | ||||||| gcaccaccGUCACACCGAACAAc 2 15 65 87 [dm3:2R:7467245-7467267:-] 0.4863 149 7 -10.98 -0.1532 MIMAT0005476 dme-miR-962 36241 tou cuGUCGUAGUUA---AAGAGAUG-GAAUa | ||:||: | ||:||||| |||| agCCGCGUCGCUUUAUUUUCUACACUUAc 2 24 677 705 [dm3:2R:7466627-7466655:-] 0.5081 134 0 -18.77 -0.8946 MIMAT0005478 dme-miR-964 36241 tou uucAAUUCGAGGGGAUAAGAUu |||| |: ::||||||: guaUUAA-AUUAUUUAUUCUGu 2 20 925 945 [dm3:2R:7466387-7466407:-] 0.5143 137 0 -10.13 -0.4059 MIMAT0005507 dme-miR-137 36241 tou gaugcACAUAAGAGUUCGUUau |||| : |||||| guaaaUGUAAAUGAAAGCAAau 3 18 892 913 [dm3:2R:7466419-7466440:-] 0.5143 129 0 -7.89 -0.1115 MIMAT0005516 dme-miR-252 36241 tou gaggaCGCCGUGAUCAUGAAUc |:| :| ||||||| uuaaaGUGUAUUUUGUACUUAu 2 18 766 787 [dm3:2R:7466545-7466566:-] 0.5081 145 7 -10.82 -0.9938

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score tou RAID00413021 dme-miR-375-3p miRNA MIMAT0005472 tou mRNA 36241 Prediction 0.2381 tou RAID00457666 dme-miR-263a-5p miRNA MIMAT0000319 tou mRNA 36241 Prediction 0.1828 tou RAID00601412 dme-miR-8-3p miRNA MIMAT0000113 tou mRNA 36241 Prediction 0.2455 tou RAID00664450 dme-miR-79-3p miRNA MIMAT0000352 tou mRNA 36241 Prediction 0.2202 tou RAID00692506 dme-miR-964-5p miRNA MIMAT0005478 tou mRNA 36241 Prediction 0.1828 tou RAID00878024 dme-miR-283-5p miRNA MIMAT0000347 tou mRNA 36241 Prediction 0.1828 tou RAID01255935 dme-miR-1000-5p miRNA MIMAT0005520 tou mRNA 36241 Prediction 0.1828 tou RAID01500232 dme-miR-252-5p miRNA MIMAT0005516 tou mRNA 36241 Prediction 0.2381 tou RAID01535722 dme-miR-962-5p miRNA MIMAT0005476 tou mRNA 36241 Prediction 0.1828 tou RAID01576569 dme-miR-959-3p miRNA MIMAT0005473 tou mRNA 36241 Prediction 0.1828 tou RAID02380575 dme-miR-960-5p miRNA MIMAT0005474 tou mRNA 36241 Prediction 0.2202 tou RAID02561220 dme-miR-955-5p miRNA MIMAT0005466 tou mRNA 36241 Prediction 0.2202 tou RAID02760794 dme-miR-305-5p miRNA MIMAT0000391 tou mRNA 36241 Prediction 0.1828 tou RAID02979157 dme-miR-137-3p miRNA MIMAT0005507 tou mRNA 36241 Prediction 0.1828 tou RAID03076529 dme-miR-210-3p miRNA MIMAT0000355 tou mRNA 36241 Prediction 0.1828 tou RAID03164644 dme-miR-304-5p miRNA MIMAT0000390 tou mRNA 36241 Prediction 0.1828 tou RAID03341012 dme-miR-981-3p miRNA MIMAT0005497 tou mRNA 36241 Prediction 0.1828 tou RAID03769240 dme-miR-972-3p miRNA MIMAT0005488 tou mRNA 36241 Prediction 0.1828