DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0011791 dme-miR-2283 36339 Den1 uaacagCA-UAAGUACUAUAAAAg || | ||: ||||||| gaggcgGUGAGUCGGCAUAUUUUu 2 18 209 232 [dm3:2R:8226967-8226990:+] 0.4036 148 7 -9.81 -0.1446 MIMAT0012199 dme-miR-2492 36339 Den1 aaACUUUCGAGAGCUGUUUUGUa ||||| | |: | |||||| aaUGAAA-AUGUUUAAAAAACAa 2 22 168 189 [dm3:2R:8226926-8226947:+] 0.4036 131 6 -7.26 -0.1080 MIMAT0012209 dme-miR-2497 36339 Den1 gacguuugUAACAUUUACAAca | || ||||||| ccuugccgAAUGAAAAUGUUua 3 15 160 181 [dm3:2R:8226918-8226939:+] 0.4036 134 0 -7.55 -0.1067 MIMAT0000362 dme-miR-263b 36339 Den1 caCUUAAGAGGGUCAC-GGUUc | | |:|:: |||| |||| gaGUAGUUUUUAAGUGACCAAa 2 20 39 60 [dm3:2R:8226797-8226818:+] 0.4255 123 0 -13.17 -0.8348 MIMAT0000389 dme-miR-31b 36339 Den1 gucgauaaggcuguaGAACGGu |||||| guggguuuaguuuucCUUGCCg 2 8 146 167 [dm3:2R:8226904-8226925:+] 0.4036 120 6 -13.31 -0.1044 MIMAT0000400 dme-miR-31a 36339 Den1 agucgauacggcuguaGAACGGu |||||| aguggguuuaguuuucCUUGCCg 2 8 145 167 [dm3:2R:8226903-8226925:+] 0.4036 120 6 -14.68 -0.1065 MIMAT0005507 dme-miR-137 36339 Den1 gaugcacauaagagUUCGUUAu ||||||| caaaagcaaacuaaAAGCAAUu 2 9 187 208 [dm3:2R:8226945-8226966:+] 0.4036 140 7 -7.79 -0.5432

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Den1 RAID00168712 dme-miR-263b-5p miRNA MIMAT0000362 Den1 mRNA 36339 Prediction 0.1828 Den1 RAID00311422 dme-miR-31b-5p miRNA MIMAT0000389 Den1 mRNA 36339 Prediction 0.1828 Den1 RAID01500214 dme-miR-137-3p miRNA MIMAT0005507 Den1 mRNA 36339 Prediction 0.2202 Den1 RAID02280049 dme-miR-31a-5p miRNA MIMAT0000400 Den1 mRNA 36339 Prediction 0.1828