DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36541 CG13344 auaGUAA-AGUA--UACGU-----UGCAUUUAUGu |||| ||| ||||| |: ||||||: cugCAUUAGCAUGCAUGCACACAUAUUUAAAUAUc 2 25 637 671 [dm3:2R:9751487-9751521:+] 0.6025 137 0 -11.21 -0.1155 MIMAT0000364 dme-miR-289 36541 CG13344 ucAGCGUCCGAGGUGA-AU--UUAUAAAu |:|:| ||: ||| || :|||||| agUUGUA-CCUUAACUAUAAUGAUAUUUa 2 25 224 251 [dm3:2R:9751074-9751101:+] 0.6228 140 6 -13.50 -0.5226 MIMAT0000364 dme-miR-289 36541 CG13344 ucAGCGUCCG-AGGUGAAUUUAUAAAu | ||| || | ||| | |||||| auUAGCAUGCAUGCAC--ACAUAUUUa 2 25 641 665 [dm3:2R:9751491-9751515:+] 0.6025 132 6 -12.38 -0.1303 MIMAT0000364 dme-miR-289 36541 CG13344 ucagcGUCCGAGGUGAAU----UUAUAAAu ::| || :|:| | :|||||| uaauuUGGACUAUAUUAAUGAUGAUAUUUa 2 22 195 224 [dm3:2R:9751045-9751074:+] 0.6228 128 6 -7.01 -0.2250 MIMAT0005464 dme-miR-iab-4as-3p 36541 CG13344 auuuGCAUAUGACUUACAUAGg ||||||: ||||||: cguuCGUAUAU---AUGUAUUu 2 19 136 154 [dm3:2R:9750986-9751004:+] 0.5986 138 0 -13.24 -0.1097 MIMAT0005488 dme-miR-972 36541 CG13344 cggauUUAUAAGCAUAACAUGu :|||||: :|||||| augauGAUAUUU-AGUUGUACc 2 18 212 232 [dm3:2R:9751062-9751082:+] 0.6228 139 6 -8.67 -0.3219 MIMAT0005489 dme-miR-973 36541 CG13344 uuUUAGCUUCAAGUUGGUGGUUGGu ||| | | || |||||||| cuAAUACACAAUGAAGCACCAACCc 2 24 54 78 [dm3:2R:9750904-9750928:+] 0.6120 159 7 -17.22 -0.3515 MIMAT0005491 dme-miR-975 36541 CG13344 uauGUCCUACAUCCUUCACAAAu || || | :||||||| uauCACAAUUAAUUGAGUGUUUu 2 21 668 690 [dm3:2R:9751518-9751540:+] 0.6025 148 7 -7.31 -0.8369 MIMAT0010206 dme-miR-995* 36541 CG13344 gcgucgaggguGUAUUAAGCcc || |||||| aaugaauaaauCA-AAUUCGaa 3 12 787 807 [dm3:2R:9751637-9751657:+] 0.6025 121 0 -9.71 -0.3273 MIMAT0011784 dme-miR-2279* 36541 CG13344 uuaAAGUGUGUGUCUAUAAAUu | ||::|||| ||||||| gcaUGCAUGCACACAUAUUUAa 2 20 645 666 [dm3:2R:9751495-9751516:+] 0.6025 171 7 -15.23 -0.9294 MIMAT0011784 dme-miR-2279* 36541 CG13344 uuaAAGUG-UGUGUCUAUAAAUu || || |:| |||||||| accUUAACUAUAAUGAUAUUUAu 2 20 230 252 [dm3:2R:9751080-9751102:+] 0.6228 158 7 -6.98 -1.1297 MIMAT0011784 dme-miR-2279* 36541 CG13344 uuAAAGUGUGUGUCUAUAAAUu | |:| |:: |||||||| uaUAUUA-AUGAUGAUAUUUAg 2 21 205 225 [dm3:2R:9751055-9751075:+] 0.6228 150 7 -7.72 -0.8852 MIMAT0011787 dme-miR-2280* 36541 CG13344 agucaaucGAACCUUCAUUUAa || | ||||||| cggcauuuCUAGUCAGUAAAUg 2 15 551 572 [dm3:2R:9751401-9751422:+] 0.4904 146 7 -6.00 -0.1617 MIMAT0011791 dme-miR-2283 36541 CG13344 uaacagcAUAAGUACUAUAAAag || | ||||||||| ccuuaacUA-UAAUGAUAUUUau 3 17 231 252 [dm3:2R:9751081-9751102:+] 0.6228 138 0 -7.21 -0.1442 MIMAT0012194 dme-miR-307-as* 36541 CG13344 ggUAGUGUUGGAGGAACUCACu ||||||| :| ||||||| auAUCACAA-UUAAUUGAGUGu 2 21 667 687 [dm3:2R:9751517-9751537:+] 0.6025 166 7 -22.71 -1.2264 MIMAT0012196 dme-miR-2489 36541 CG13344 ugacGUUUAUG-UUGUA-UGUUAu || || : ||:|| ||||| cacaCAUAUUUAAAUAUCACAAUu 2 19 654 677 [dm3:2R:9751504-9751527:+] 0.6025 121 0 -7.64 -1.2168 MIMAT0012213 dme-miR-2499 36541 CG13344 augccugcacUUA-CAGUAGGCGUa ||| || ||||||| uagaaaaccaAAUAGUGAUCCGCAc 2 15 692 716 [dm3:2R:9751542-9751566:+] 0.6025 153 7 -15.57 -0.3472 MIMAT0012215 dme-miR-2500 36541 CG13344 gacuccaggugugugUUUUAGg |||||| aauaaaucaaauucgAAAAUCa 2 8 791 812 [dm3:2R:9751641-9751662:+] 0.6025 120 6 -7.54 -0.3882 MIMAT0000109 dme-miR-4 36541 CG13344 aguUACCAACAGAUCGAAAUa ||| || :|||||||| uuuAUGUUUAGUUAGCUUUAg 2 19 160 180 [dm3:2R:9751010-9751030:+] 0.6228 162 7 -11.40 -0.7129 MIMAT0000110 dme-miR-5 36541 CG13344 guaUAGUGUUGCU-AGCAAGGAAa || |:| : | |:|| |||| augAUGAUAUUUAGUUGUACCUUa 2 21 212 235 [dm3:2R:9751062-9751085:+] 0.6228 123 0 -9.10 -0.1217 MIMAT0000115 dme-miR-10-5p 36541 CG13344 uuguUUAAGCCUAGAUGUCCCa || | || ||||||| gaguAACCCCGA--UACAGGGc 2 19 615 634 [dm3:2R:9751465-9751484:+] 0.4904 143 7 -14.18 -0.1821 MIMAT0000332 dme-miR-274 36541 CG13344 uaaugggcaaucacagccAGUGUUuu |||||| ugcacacauauuuaaauaUCACAAuu 3 9 652 677 [dm3:2R:9751502-9751527:+] 0.6025 120 0 -8.87 -0.1808 MIMAT0000333 dme-miR-275 36541 CG13344 gcgcGCGAUGAAGUC--CAUGGAcu :| || ||:|| |||||| augaUGAUA-UUUAGUUGUACCUua 3 20 212 235 [dm3:2R:9751062-9751085:+] 0.6228 132 0 -12.96 -0.3196 MIMAT0000341 dme-miR-279 36541 CG13344 aauuacucacaccuAGAUCAGu ||||||| guugaagcggcauuUCUAGUCa 2 9 544 565 [dm3:2R:9751394-9751415:+] 0.4904 140 7 -13.61 -0.8376 MIMAT0000347 dme-miR-283 36541 CG13344 ucuUAAUGGUCGACUAUAAAu |||| : | |||||||| uauAUUAAU-GAUGAUAUUUa 2 19 205 224 [dm3:2R:9751055-9751074:+] 0.6228 156 7 -9.72 -1.2721 MIMAT0000347 dme-miR-283 36541 CG13344 ucUUAAUGGUCGACUAUAAAu || ||: | |||||||| uuAACUAUAA--UGAUAUUUa 2 20 233 251 [dm3:2R:9751083-9751101:+] 0.6228 152 7 -11.20 -1.3238 MIMAT0000347 dme-miR-283 36541 CG13344 ucuuaauggucgacUAUAAAu |||||| gcaugcaugcacacAUAUUUa 2 8 645 665 [dm3:2R:9751495-9751515:+] 0.6025 120 6 -5.38 -0.1342 MIMAT0000351 dme-miR-124 36541 CG13344 gaACCGUAAGUGGCGCACGGAAu || :|||:| : :|| |||| gaUGAUAUUUAGU-UGUACCUUa 2 22 214 235 [dm3:2R:9751064-9751085:+] 0.6228 127 0 -13.29 -0.1170 MIMAT0000352 dme-miR-79 36541 CG13344 uacGAAACCAUUAGAUCGAAAu :| || | | :||||||| uauUUAUGUUUAGUUAGCUUUa 2 20 158 179 [dm3:2R:9751008-9751029:+] 0.6228 155 7 -12.36 -1.1213 MIMAT0000359 dme-miR-286 36541 CG13344 ucgugcucacaagccAGAUCAGu ||||||| aguugaagcggcauuUCUAGUCa 2 9 543 565 [dm3:2R:9751393-9751415:+] 0.4904 140 7 -16.84 -0.8411 MIMAT0000393 dme-miR-306 36541 CG13344 aaCUCUCAGUGAUUCAUGGAcu || | |:| | |||||| auGAUAUUUAGU-UGUACCUua 3 21 215 235 [dm3:2R:9751065-9751085:+] 0.6228 130 0 -8.62 -0.3250 MIMAT0000407 dme-miR-315 36541 CG13344 cgaAAGACUCGUUGUUAGUUUu ||| | | ||||||| aacUUCAAUGAAUAAAUCAAAu 2 20 781 802 [dm3:2R:9751631-9751652:+] 0.6025 147 7 -8.79 -1.2516 MIMAT0000408 dme-miR-316 36541 CG13344 gcgGUCAUUCGCCUUUUUCUGu :| ||| : ||||||| uuaUAAUAAUUUACAAAAGACu 2 20 249 270 [dm3:2R:9751099-9751120:+] 0.6228 147 7 -10.23 -0.9731 MIMAT0000409 dme-miR-317 36541 CG13344 ugaccUAUGGUGGUCGACACAAGu :|: | ::: :||||||| cuucuGUGACUUUGUUUGUGUUCg 2 20 110 133 [dm3:2R:9750960-9750983:+] 0.5745 147 7 -17.13 -0.8205 MIMAT0005476 dme-miR-962 36541 CG13344 cugucgUAGU-UAAA--GAGAUGGAAUa || | |||| :| ||||||| uuaaugAUGAUAUUUAGUUGUACCUUAa 2 20 209 236 [dm3:2R:9751059-9751086:+] 0.6228 153 7 -13.35 -1.1965 MIMAT0005477 dme-miR-963 36541 CG13344 cuUUGUUGGACUAUAA------AUGGAAca ||::| ||||||| |||||| uuAAUGA--UGAUAUUUAGUUGUACCUUaa 3 23 209 236 [dm3:2R:9751059-9751086:+] 0.6228 130 0 -11.19 -0.2121 MIMAT0005493 dme-miR-977 36541 CG13344 aaUCUGU-UGCACUUAUAGAGu | ||| |: | |||||| | gcACACAUAUUUAAAUAUCACa 2 20 653 674 [dm3:2R:9751503-9751524:+] 0.6025 126 0 -5.75 -0.1439 MIMAT0005503 dme-miR-986 36541 CG13344 agucagUGUUGCG-AUAAGCUcu |:|| | |||||| caaugaAUAAAUCAAAUUCGAaa 3 17 786 808 [dm3:2R:9751636-9751658:+] 0.6025 123 0 -6.87 -0.2623 MIMAT0005504 dme-miR-987 36541 CG13344 guaguUAGGU-CUGAUAAAU-GAAAu ||::| | :|| ||| |||| uauguAUUUAUGUUUAGUUAGCUUUa 2 20 154 179 [dm3:2R:9751004-9751029:+] 0.6228 122 0 -7.56 -0.8891 MIMAT0005515 dme-miR-996 36541 CG13344 ucugcUCGUACUUUAGAUCAGu |||: | ||||||| guugaAGCGGCAUUUCUAGUCa 2 18 544 565 [dm3:2R:9751394-9751415:+] 0.4904 149 7 -18.85 -0.8411 MIMAT0005024 dme-miR-1011 36541 CG13344 gacGCUCGCUAAAC-----UUGG-UUAUu :|||:| |||| |||| |||| aauUGAGUGUUUUGUAGAAAACCAAAUAg 2 21 678 706 [dm3:2R:9751528-9751556:+] 0.6025 123 0 -16.32 -0.9327 MIMAT0005027 dme-miR-1014 36541 CG13344 gacGUUUACUU-UUACU-UAAAa :| || || :|||| |||| gacUAUAUUAAUGAUGAUAUUUa 2 19 202 224 [dm3:2R:9751052-9751074:+] 0.6228 121 0 -3.52 -1.2211 MIMAT0005027 dme-miR-1014 36541 CG13344 gacguUUACUUUUACU-UAAAa || | ||||| |||| accuuAACUAUAAUGAUAUUUa 2 17 230 251 [dm3:2R:9751080-9751101:+] 0.6228 120 0 -2.51 -1.3206

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG13344 RAID00243739 dme-miR-10-5p miRNA MIMAT0000115 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00273774 dme-miR-963-5p miRNA MIMAT0005477 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00527034 dme-miR-1014-3p miRNA MIMAT0005027 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00561971 dme-miR-274-5p miRNA MIMAT0000332 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00567931 dme-miR-210-3p miRNA MIMAT0000355 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00578418 dme-miR-304-5p miRNA MIMAT0000390 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00698064 dme-miR-986-5p miRNA MIMAT0005503 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID00808207 dme-miR-279-3p miRNA MIMAT0000341 CG13344 mRNA 36541 Prediction 0.2381 CG13344 RAID01130665 dme-miR-987-5p miRNA MIMAT0005504 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID01287271 dme-miR-4-3p miRNA MIMAT0000109 CG13344 mRNA 36541 Prediction 0.2202 CG13344 RAID01539252 dme-miR-5-5p miRNA MIMAT0000110 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID01550488 dme-miR-306-5p miRNA MIMAT0000393 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID01592769 dme-miR-286-3p miRNA MIMAT0000359 CG13344 mRNA 36541 Prediction 0.2381 CG13344 RAID01673176 dme-miR-977-3p miRNA MIMAT0005493 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID01765900 dme-miR-315-5p miRNA MIMAT0000407 CG13344 mRNA 36541 Prediction 0.2202 CG13344 RAID02017844 dme-miR-973-5p miRNA MIMAT0005489 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID02021371 dme-miR-283-5p miRNA MIMAT0000347 CG13344 mRNA 36541 Prediction 0.2381 CG13344 RAID02047460 dme-miR-275-3p miRNA MIMAT0000333 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID02214819 dme-miR-316-5p miRNA MIMAT0000408 CG13344 mRNA 36541 Prediction 0.2381 CG13344 RAID02731986 dme-miR-1017-3p miRNA MIMAT0005030 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID02904024 dme-mir-10 miRNA MI0000130 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID03234916 dme-miR-1011-3p miRNA MIMAT0005024 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID03268385 dme-miR-79-3p miRNA MIMAT0000352 CG13344 mRNA 36541 Prediction 0.2202 CG13344 RAID03430477 dme-miR-124-3p miRNA MIMAT0000351 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID03482577 dme-miR-996-3p miRNA MIMAT0005515 CG13344 mRNA 36541 Prediction 0.2455 CG13344 RAID03728665 dme-miR-317-3p miRNA MIMAT0000409 CG13344 mRNA 36541 Prediction 0.2202 CG13344 RAID03777439 dme-miR-975-5p miRNA MIMAT0005491 CG13344 mRNA 36541 Prediction 0.1828 CG13344 RAID03897414 dme-miR-962-5p miRNA MIMAT0005476 CG13344 mRNA 36541 Prediction 0.2202