DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005489 dme-miR-973 36824 CG8060 uuuUAGCUUCAAGUUGG--UGG-UUGGu ||| ||| |:|:|: ||| |||| gccAUCUAAGCUUAGCUAAACCGAACCg 2 23 313 340 [dm3:2R:12203850-12203877:-] 0.5739 133 0 -17.52 -0.9640 MIMAT0005491 dme-miR-975 36824 CG8060 uaugucCUACAUCCUUCACAAAu | |||: ||||||||| agcuuaGUUGUGUGAAGUGUUUg 2 18 13 35 [dm3:2R:12204155-12204177:-] 0.5446 165 7 -18.73 -0.9160 MIMAT0005509 dme-miR-991 36824 CG8060 ugaaaGGUUUGAUG-UUGAAAUu :::::: || ||||||| gcacaUUGGGUAACAAACUUUAu 2 18 193 215 [dm3:2R:12203975-12203997:-] 0.5739 144 7 -5.82 -0.8474 MIMAT0011784 dme-miR-2279* 36824 CG8060 uuaaaGUGUGUGUCUAUAAAUu :| |:|:||||||||| acagaUAGAUAUAGAUAUUUAc 2 18 236 257 [dm3:2R:12203933-12203954:-] 0.5739 165 7 -14.20 -0.5776 MIMAT0011788 dme-miR-2281* 36824 CG8060 aaCGUAGACGUCGACGUCUAUUa |||| ||| | :|||||| uuGCAUGAGCA--UAUAGAUAAu 2 22 215 235 [dm3:2R:12203955-12203975:-] 0.5739 142 6 -15.43 -0.1052 MIMAT0012199 dme-miR-2492 36824 CG8060 aaacuuUCGAGAGCUGUUUUGua | :| | |||||| cuauuuAUUUAUAUUCAAAACca 3 18 149 171 [dm3:2R:12204019-12204041:-] 0.5446 121 0 -3.81 -0.2413 MIMAT0000334 dme-miR-92a 36824 CG8060 uauccggcccuGUUCACGUUAc ||| |||||| auauucaaaacCAAAUGCAAUa 2 12 159 180 [dm3:2R:12204010-12204031:-] 0.5446 123 6 -6.39 -0.1141 MIMAT0000347 dme-miR-283 36824 CG8060 ucUUAAUGGUCGACUAUAAAu :|| : :| : ||||||| caGAUAGAUA-UAGAUAUUUa 2 20 237 256 [dm3:2R:12203934-12203953:-] 0.5739 141 7 -7.74 -1.1875 MIMAT0000358 dme-miR-92b 36824 CG8060 cguccggcccugaucACGUUAa |||||| auauucaaaaccaaaUGCAAUa 2 8 159 180 [dm3:2R:12204010-12204031:-] 0.5446 120 6 -4.54 -0.1141 MIMAT0000402 dme-miR-310 36824 CG8060 uuuccggcccuucacACGUUAu |||||| auauucaaaaccaaaUGCAAUa 2 8 159 180 [dm3:2R:12204010-12204031:-] 0.5446 120 6 -6.80 -0.1141 MIMAT0000403 dme-miR-311 36824 CG8060 aguccggccacuuacACGUUAu |||||| auauucaaaaccaaaUGCAAUa 2 8 159 180 [dm3:2R:12204010-12204031:-] 0.5446 120 6 -6.80 -0.1153 MIMAT0000404 dme-miR-312 36824 CG8060 aguccggcagaGUUCACGUUAu ||| |||||| auauucaaaacCAAAUGCAAUa 2 12 159 180 [dm3:2R:12204010-12204031:-] 0.5446 123 6 -9.92 -0.1153 MIMAT0000405 dme-miR-313 36824 CG8060 agcccgacacuuuucACGUUAu |||||| auauucaaaaccaaaUGCAAUa 2 8 159 180 [dm3:2R:12204010-12204031:-] 0.5446 120 6 -6.80 -0.1141 MIMAT0005479 dme-miR-932 36824 CG8060 gacgUUACGUGAUGCCU-UAACu |||||| || ||| |||| accaAAUGCAAUA-GGAUAUUGg 2 19 168 189 [dm3:2R:12204001-12204022:-] 0.5592 132 0 -14.53 -0.5372 MIMAT0005486 dme-miR-970 36824 CG8060 uaucggcgcacacaGAAUACu |||||| aaauaaacccguugCUUAUGc 2 8 347 367 [dm3:2R:12203823-12203843:-] 0.5739 120 6 -14.03 -0.1145 MIMAT0005516 dme-miR-252 36824 CG8060 gaggacGCCGUGAUCAU-GAAUc :||:|| :||| |||| ----auUGGUACAGGUAGCUUAg 2 17 1 19 [dm3:2R:12204171-12204189:-] 0.5446 124 0 -17.78 -0.8696

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8060 RAID00169650 dme-miR-283-5p miRNA MIMAT0000347 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID00811830 dme-miR-92b-3p miRNA MIMAT0000358 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID01076236 dme-miR-33-5p miRNA MIMAT0000342 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID01112720 dme-miR-92a-3p miRNA MIMAT0000334 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID01313341 dme-miR-991-3p miRNA MIMAT0005509 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID01709474 dme-miR-310-3p miRNA MIMAT0000402 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID01993860 dme-miR-311-3p miRNA MIMAT0000403 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID02269212 dme-miR-312-3p miRNA MIMAT0000404 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID02390430 dme-miR-970-3p miRNA MIMAT0005486 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID02527392 dme-miR-313-3p miRNA MIMAT0000405 CG8060 mRNA 36824 Prediction 0.2202 CG8060 RAID02708546 dme-miR-975-5p miRNA MIMAT0005491 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID03214905 dme-miR-252-5p miRNA MIMAT0005516 CG8060 mRNA 36824 Prediction 0.1828 CG8060 RAID03235171 dme-miR-932-5p miRNA MIMAT0005479 CG8060 mRNA 36824 Prediction 0.1828