DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0011787 dme-miR-2280* 37083 nopo agUCA--AUCGAACCUUCAUUUAa ||| || :|| | ||||||| auAGUAAUAAUUUAGCAGUAAAUa 2 21 106 129 [dm3:2R:14069990-14070013:+] 0.4472 159 7 -7.96 -1.1863 MIMAT0000106 dme-miR-2a 37083 nopo cgaguaguuucgaccgACACUAu |||||| -----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -9.82 -0.1341 MIMAT0000107 dme-miR-2b 37083 nopo cgaggaguuucgaccgACACUAu |||||| -----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -11.44 -0.1341 MIMAT0000111 dme-miR-6 37083 nopo uuuuucuUGUCGGUGACACUAu |||||| |||||| ---guccACAGCC-AUGUGAUc 2 16 1 18 [dm3:2R:14069885-14069902:+] 0.5896 129 6 -18.65 -0.1255 MIMAT0000116 dme-miR-11 37083 nopo cguucuugagucugACACUAc |||||| ---guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -10.42 -0.1395 MIMAT0000118 dme-miR-13a 37083 nopo ugaguaguuuuaccgACACUAu |||||| ----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -7.72 -0.1368 MIMAT0000119 dme-miR-13b 37083 nopo ugagcaguuuuaccgACACUAu |||||| ----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -7.40 -0.1368 MIMAT0000390 dme-miR-304 37083 nopo gaGUGUAAAUGUUUAACU-CUAAu |:|: ||: : ||||| |||| caCGCGAUUG-GUAUUGAGGAUUg 2 22 47 69 [dm3:2R:14069931-14069953:+] 0.4885 123 0 -14.43 -0.3705 MIMAT0000399 dme-miR-308 37083 nopo gagugucauauuaggACACUAa |||||| ----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -14.15 -0.1408 MIMAT0000411 dme-miR-2c 37083 nopo cggguaguuucgaccgACACUAu |||||| -----guccacagccaUGUGAUc 2 8 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 6 -13.35 -0.1341 MIMAT0005507 dme-miR-137 37083 nopo gaugcACAUA-AGAGUUCGUUAu || || |:||||||| gccaaUGCAUGAAUUAAGCAAUa 2 18 86 108 [dm3:2R:14069970-14069992:+] 0.4471 148 7 -12.00 -1.1071 MIMAT0005016 dme-miR-1003 37083 nopo gacacuuauacauuUACACUcu |||||| ----guccacagccAUGUGAuc 3 9 1 18 [dm3:2R:14069885-14069902:+] 0.5896 120 0 -4.59 -0.1144 MIMAT0005017 dme-miR-1004 37083 nopo gacacucccuUCACUACACUcu || |||||| ----guccacAGCCAUGUGAuc 3 13 1 18 [dm3:2R:14069885-14069902:+] 0.5896 124 0 -5.43 -0.1156

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nopo RAID00158367 dme-miR-6-3p miRNA MIMAT0000111 nopo mRNA 37083 Prediction 0.1828 nopo RAID00308601 dme-miR-308-3p miRNA MIMAT0000399 nopo mRNA 37083 Prediction 0.1828 nopo RAID00800335 dme-miR-304-5p miRNA MIMAT0000390 nopo mRNA 37083 Prediction 0.1828 nopo RAID02623463 dme-miR-2b-3p miRNA MIMAT0000107 nopo mRNA 37083 Prediction 0.1828 nopo RAID02760937 dme-miR-1004-3p miRNA MIMAT0005017 nopo mRNA 37083 Prediction 0.1828 nopo RAID02914083 dme-miR-13b-3p miRNA MIMAT0000119 nopo mRNA 37083 Prediction 0.1828 nopo RAID03115297 dme-miR-137-3p miRNA MIMAT0005507 nopo mRNA 37083 Prediction 0.2202 nopo RAID03480847 dme-miR-2a-3p miRNA MIMAT0000106 nopo mRNA 37083 Prediction 0.1828 nopo RAID03607988 dme-miR-1003-3p miRNA MIMAT0005016 nopo mRNA 37083 Prediction 0.1828 nopo RAID03730087 dme-miR-13a-3p miRNA MIMAT0000118 nopo mRNA 37083 Prediction 0.1828 nopo RAID03809751 dme-miR-2c-3p miRNA MIMAT0000411 nopo mRNA 37083 Prediction 0.1828 nopo RAID03912419 dme-miR-11-3p miRNA MIMAT0000116 nopo mRNA 37083 Prediction 0.1828 nopo RAID04012497 dme-miR-33-5p miRNA MIMAT0000342 nopo mRNA 37083 Prediction 0.1828