DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37141 Atg7 auAGUA-AAGUAUACGUU-----GCAUUUAUGu |:|| |||| | |||| | ||||||: uuUUAUCUUCA-AAGCAAAAUAUCUUAAAUAUg 2 26 21 52 [dm3:2R:14508174-14508205:-] 0.5708 141 0 -6.90 -0.1923 MIMAT0005475 dme-miR-961 37141 Atg7 uagagucaaugaccACUAGUUu ||:|||| --guuccacaaaauUGGUCAAg 2 9 1 20 [dm3:2R:14508206-14508225:-] 0.5708 124 0 -8.25 -0.1039 MIMAT0011784 dme-miR-2279* 37141 Atg7 uuaAAGUGU-GUGUCUAUA-AAUu |||| | || | |||| ||| aucUUCAAAGCA-AAAUAUCUUAa 2 20 25 47 [dm3:2R:14508179-14508201:-] 0.5708 120 0 -4.68 -1.2845 MIMAT0012199 dme-miR-2492 37141 Atg7 aaacuUUCGAG--AGCUGUUUUGUa |||:|: || ||||:|| uggucAAGUUUUAUCUUCAAAGCAa 2 19 13 37 [dm3:2R:14508189-14508213:-] 0.5708 137 0 -11.98 -0.1425 MIMAT0012200 dme-miR-2493* 37141 Atg7 accgacacacacaCACACUcg |||||| uguaauaauaaaaGUGUGAau 3 9 230 250 [dm3:2R:14507976-14507996:-] 0.2935 120 0 -7.26 -0.1492 MIMAT0012215 dme-miR-2500 37141 Atg7 gacuccAGGUGUGU-GUUUUAgg ||: || | |||||| guuuuaUCUUCAAAGCAAAAUau 3 17 20 42 [dm3:2R:14508184-14508206:-] 0.5708 131 0 -7.10 -0.1100 MIMAT0000109 dme-miR-4 37141 Atg7 aguuaCCAACAG-AUCGAAAUa | || |: |:|||||| auucaGCUUAUUGUGGCUUUAa 2 17 55 76 [dm3:2R:14508150-14508171:-] 0.5162 135 6 -8.69 -0.1689 MIMAT0000332 dme-miR-274 37141 Atg7 uaaugggcaaucacagccaGUGUUUu |||||| ---------------guucCACAAAa 2 8 1 11 [dm3:2R:14508215-14508225:-] 0.5708 120 6 -11.22 -0.1476 MIMAT0000341 dme-miR-279 37141 Atg7 aauuacucacaccUAGAUCAGu |||||||| augcuuuuauucuAUCUAGUCg 2 10 129 150 [dm3:2R:14508076-14508097:-] 0.4617 145 7 -12.39 -1.0342 MIMAT0000359 dme-miR-286 37141 Atg7 ucgugcucACAAGCCAGAUCAGu | ||| ||||||| aaugcuuuUAUUCUAUCUAGUCg 2 16 128 150 [dm3:2R:14508076-14508098:-] 0.4617 151 7 -13.17 -1.0342 MIMAT0000413 dme-miR-iab-4-3p 37141 Atg7 caaUGCAUAU-GACUU-C-CAUAUGGc |: |||| :| || | |||||| agcAUUUAUAGUUCAAUGUCUAUACCa 2 22 85 111 [dm3:2R:14508115-14508141:-] 0.4617 122 6 -9.71 -0.1524 MIMAT0005476 dme-miR-962 37141 Atg7 cugucguaguuaaagagAUGGAAUa ||:|||| uuaucuucaaagcaaaaUAUCUUAa 2 9 23 47 [dm3:2R:14508179-14508203:-] 0.5708 124 0 -7.04 -0.1121 MIMAT0005478 dme-miR-964 37141 Atg7 uucAAUUCGAGGGGAUAAGAUu || | : |:::||||||| uacUUCAAUGCUUUUAUUCUAu 2 20 122 143 [dm3:2R:14508083-14508104:-] 0.4617 155 7 -11.83 -0.9247 MIMAT0005493 dme-miR-977 37141 Atg7 aaucuGUUGC-ACUUAUAGAGu ||| | |||||||: aucuuCAAAGCAAAAUAUCUUa 2 17 25 46 [dm3:2R:14508180-14508201:-] 0.5708 131 0 -9.30 -0.3699 MIMAT0005507 dme-miR-137 37141 Atg7 gaugcACAUAAGAG-UUCGUUau | ||| :|| |||||| caaguUUUAUCUUCAAAGCAAaa 3 18 17 39 [dm3:2R:14508187-14508209:-] 0.5708 136 0 -8.02 -0.2846 MIMAT0005515 dme-miR-996 37141 Atg7 ucugcucGUACUUUAGAUCAGu :|| |||||||| augcuuuUAUUCUAUCUAGUCg 2 16 129 150 [dm3:2R:14508076-14508097:-] 0.4617 147 7 -12.77 -1.0369 MIMAT0005023 dme-miR-1010 37141 Atg7 gaCGUUU-ACCUUGCUA---UC-CACUUu | ||| || ||: || || ||||| uuGAAAAUUGUAAUAAUAAAAGUGUGAAu 2 23 222 250 [dm3:2R:14507976-14508004:-] 0.3446 120 0 -8.61 -1.2268 MIMAT0005027 dme-miR-1014 37141 Atg7 gaCGUUUACUUUU---ACUUAAAa ||| | ||||| ||||||| agGCAUAAGAAAAAUGUGAAUUUa 2 20 195 218 [dm3:2R:14508008-14508031:-] 0.3958 162 7 -9.82 -0.9588 MIMAT0005027 dme-miR-1014 37141 Atg7 gacguUUACUUU--UACUUAAAa ||| ||| :||||||| guaauAAUAAAAGUGUGAAUUUa 2 17 231 253 [dm3:2R:14507973-14507995:-] 0.2935 155 7 -6.04 -0.6251

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Atg7 RAID00496195 dme-miR-977-3p miRNA MIMAT0005493 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID01259456 dme-miR-996-3p miRNA MIMAT0005515 Atg7 mRNA 37141 Prediction 0.2381 Atg7 RAID01656190 dme-miR-962-5p miRNA MIMAT0005476 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID01742782 dme-miR-137-3p miRNA MIMAT0005507 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID02055932 dme-miR-279-3p miRNA MIMAT0000341 Atg7 mRNA 37141 Prediction 0.2381 Atg7 RAID02169427 dme-miR-4-3p miRNA MIMAT0000109 Atg7 mRNA 37141 Prediction 0.2202 Atg7 RAID02555200 dme-miR-274-5p miRNA MIMAT0000332 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID02630576 dme-miR-286-3p miRNA MIMAT0000359 Atg7 mRNA 37141 Prediction 0.2381 Atg7 RAID02676090 dme-mir-iab-4 miRNA MI0000432 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID02918536 dme-miR-1010-3p miRNA MIMAT0005023 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID03146085 dme-miR-iab-4-3p miRNA MIMAT0000413 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID03608253 dme-miR-1014-3p miRNA MIMAT0005027 Atg7 mRNA 37141 Prediction 0.2202 Atg7 RAID03720662 dme-miR-1006-3p miRNA MIMAT0005019 Atg7 mRNA 37141 Prediction 0.1828 Atg7 RAID04018635 dme-miR-277-3p miRNA MIMAT0000338 Atg7 mRNA 37141 Prediction 0.2381 Atg7 RAID04036296 dme-miR-964-5p miRNA MIMAT0005478 Atg7 mRNA 37141 Prediction 0.2202