DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 37172 CG15097 gccccgcucucuuaCUAUUCc |||||| cacgcaauuaaaacGAUAAGu 2 8 735 755 [dm3:2R:14709710-14709730:-] 0.5598 120 6 -4.99 -0.1544 MIMAT0000364 dme-miR-289 37172 CG15097 ucAGC-GU-CCGAGGUGAAU--UUAUAAAu ||| :| || | ||||| ||||||| guUCGUUAUGGAUAGACUUAAGAAUAUUUa 2 25 454 483 [dm3:2R:14709982-14710011:-] 0.5136 161 7 -14.84 -0.6931 MIMAT0000388 dme-miR-303 37172 CG15097 uggucaaAGGA-CACU---UUGGAUUu |||| | || ||||||| acacaacUCCUGGAGAAGCAACCUAAu 2 17 622 648 [dm3:2R:14709817-14709843:-] 0.5598 146 7 -15.82 -0.2054 MIMAT0005464 dme-miR-iab-4as-3p 37172 CG15097 auuUGCAU-AUGA-CUUACAUAGg |:||| ||:| ||||||: cuuAUGUACUAUUCUUAUGUAUUu 2 20 707 730 [dm3:2R:14709735-14709758:-] 0.5598 137 0 -11.60 -0.1097 MIMAT0011784 dme-miR-2279* 37172 CG15097 uuaaagUGUGUGUCUAUAAAUu || :| : ||||||| ggauagACUUAAGAAUAUUUAu 2 17 463 484 [dm3:2R:14709981-14710002:-] 0.5136 148 7 -7.18 -0.6034 MIMAT0011785 dme-miR-2279 37172 CG15097 uuUAUUUA-UAGAAGCG-CACUUu | ::|| | | |||| ||||| ucAAGGAUGAACAUCGCAGUGAAu 2 21 525 548 [dm3:2R:14709917-14709940:-] 0.5150 123 0 -12.82 -0.1561 MIMAT0011787 dme-miR-2280* 37172 CG15097 agucaaucgaaccUUCAUUUAa |||||||| caauuaaaacgauAAGUAAAUg 2 10 739 760 [dm3:2R:14709705-14709726:-] 0.5598 145 7 -5.01 -0.9776 MIMAT0011791 dme-miR-2283 37172 CG15097 uaACAGCAUAAGUA-CUAUAAAAg ||| ||||| | :|||||| uaUGUACUAUUCUUAUGUAUUUUa 2 22 709 732 [dm3:2R:14709733-14709756:-] 0.5598 148 6 -8.91 -0.2589 MIMAT0012197 dme-miR-2490 37172 CG15097 aacguuGGACGAAAUAGCGAAGu | ||: :||||||| cuggucCAUGUCGCGUCGCUUCu 2 18 354 376 [dm3:2R:14710089-14710111:-] 0.6123 145 7 -15.46 -0.3286 MIMAT0012198 dme-miR-2491 37172 CG15097 ucguUGA-CGUUUCCGUUGUCGc ||| |||| ||||||||| cggcACUAGCAAUGGCAACAGCa 2 19 45 67 [dm3:2R:14710398-14710420:-] 0.7331 173 7 -25.84 -0.6266 MIMAT0012198 dme-miR-2491 37172 CG15097 ucgUUGACGUUUCCGUUGUCGc |:| |||::| ||||||| gagAGCCGCAGGGCCAACAGCa 2 20 247 268 [dm3:2R:14710197-14710218:-] 0.6924 167 7 -21.11 -0.2158 MIMAT0012202 dme-miR-2494* 37172 CG15097 aaggguuagaccacGUGAAUg |||||| cauaaaccucuauaCACUUAa 2 8 667 687 [dm3:2R:14709778-14709798:-] 0.5598 120 6 -9.78 -0.3916 MIMAT0012206 dme-miR-2496* 37172 CG15097 augcUACCGGAGAGUGUGUGCGUg || |: |:|:|:||||||| ucuuAU-GUAUUUUAUACACGCAa 2 21 719 741 [dm3:2R:14709724-14709746:-] 0.5598 162 7 -20.37 -1.2974 MIMAT0000319 dme-miR-263a 37172 CG15097 cacuuaagaagGUCACGGUAAUUg ||| ||||||| agcaauggcaaCAGCACCAUUAAc 2 14 52 75 [dm3:2R:14710390-14710413:-] 0.7331 149 7 -15.57 -0.4482 MIMAT0000341 dme-miR-279 37172 CG15097 aauuacucacACCUAGAUCAGu || ||||||| cacacacacaUGUUUCUAGUCa 2 13 561 582 [dm3:2R:14709883-14709904:-] 0.5598 144 7 -12.89 -1.1373 MIMAT0000359 dme-miR-286 37172 CG15097 ucGUGCUCACAAGCCAGAUCAGu ||| |||| ||||||| caCACACAUGUU---UCUAGUCa 2 22 563 582 [dm3:2R:14709883-14709902:-] 0.5598 149 7 -16.95 -1.1272 MIMAT0000361 dme-miR-87 37172 CG15097 guguggacuuuaaAACGAGUu ||||||| ggcggugguucgaUUGCUCAa 2 9 502 522 [dm3:2R:14709943-14709963:-] 0.4703 140 7 -13.23 -0.4318 MIMAT0005463 dme-miR-iab-4as-5p 37172 CG15097 gccAUAUG-GAAGU---CAUAUG-CAUu ||||| ||| | ||||| ||| cucUAUACACUUAAAUUAUAUACUGUAu 2 21 674 701 [dm3:2R:14709764-14709791:-] 0.5598 122 0 -10.07 -1.0946 MIMAT0005476 dme-miR-962 37172 CG15097 cugucGUAGUUAAAGAGAUG-GAAUa ||| || ||| ||| |||| acauaCAUAAACCUCUAUACACUUAa 2 21 662 687 [dm3:2R:14709778-14709803:-] 0.5598 132 0 -9.89 -1.2989 MIMAT0005480 dme-miR-965 37172 CG15097 uuccccUUUUCGAUAUGCGAAu || |||||| ||| uacauaAACCUCUAUACACUUa 2 17 665 686 [dm3:2R:14709779-14709800:-] 0.5598 124 0 -10.95 -0.1002 MIMAT0005486 dme-miR-970 37172 CG15097 uaucggcgcacacAGAAUACu ||||||| auacuguauacacUCUUAUGu 2 9 693 713 [dm3:2R:14709752-14709772:-] 0.5598 140 7 -10.73 -0.8423 MIMAT0005486 dme-miR-970 37172 CG15097 uaucggcgcacacAGAAUACu ||||||| ucuuauguacuauUCUUAUGu 2 9 706 726 [dm3:2R:14709739-14709759:-] 0.5598 140 7 -8.16 -1.1682 MIMAT0005515 dme-miR-996 37172 CG15097 ucUGCUCGUACUUUAGAUCAGu || |||| ||||||| acACACACAUG-UUUCUAGUCa 2 21 562 582 [dm3:2R:14709883-14709903:-] 0.5598 146 7 -17.92 -1.1330

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG15097 RAID00191697 dme-miR-279-3p miRNA MIMAT0000341 CG15097 mRNA 37172 Prediction 0.2381 CG15097 RAID01003475 dme-miR-286-3p miRNA MIMAT0000359 CG15097 mRNA 37172 Prediction 0.2381 CG15097 RAID01039541 dme-miR-263a-5p miRNA MIMAT0000319 CG15097 mRNA 37172 Prediction 0.1828 CG15097 RAID01136144 dme-miR-970-3p miRNA MIMAT0005486 CG15097 mRNA 37172 Prediction 0.2381 CG15097 RAID02465774 dme-miR-989-3p miRNA MIMAT0005506 CG15097 mRNA 37172 Prediction 0.1828 CG15097 RAID02540588 dme-miR-965-3p miRNA MIMAT0005480 CG15097 mRNA 37172 Prediction 0.1828 CG15097 RAID02861151 dme-miR-996-3p miRNA MIMAT0005515 CG15097 mRNA 37172 Prediction 0.2455 CG15097 RAID03276209 dme-miR-962-5p miRNA MIMAT0005476 CG15097 mRNA 37172 Prediction 0.1828 CG15097 RAID03438952 dme-miR-87-3p miRNA MIMAT0000361 CG15097 mRNA 37172 Prediction 0.2455 CG15097 RAID03776761 dme-miR-iab-8-5p miRNA MIMAT0005463 CG15097 mRNA 37172 Prediction 0.1828