DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37244 CG11242 auaGUAAA-GUAUACGUUGCAUUUAUGu |:||| :| || ||| ||||||: aacCGUUUGUAAAU-CAAAAUAAAUAUc 2 25 273 299 [dm3:2R:15373009-15373035:-] 0.5734 149 0 -8.03 -0.2357 MIMAT0000363 dme-miR-288 37244 CG11242 guaCUUUACUUUAGCUGUACUuu || || | |||||| ucaGAUAUUCUUACAACAUGAuu 3 21 170 192 [dm3:2R:15373116-15373138:-] 0.6314 124 0 -6.41 -0.1958 MIMAT0000364 dme-miR-289 37244 CG11242 ucaGCGUCCGAGGUGAAUUU-AUAAAu | :| | ||:|| ||| ||||| agaCUUACGAACCGCUAAAACUAUUUg 2 24 65 91 [dm3:2R:15373217-15373243:-] 0.5248 131 0 -12.65 -0.9103 MIMAT0005464 dme-miR-iab-4as-3p 37244 CG11242 auUUGCAUAUGACUUACAUAgg ||| | || || |||||| aaAACAUCUA-UGUAUGUAUgu 3 21 146 166 [dm3:2R:15373142-15373162:-] 0.6314 142 0 -8.00 -0.2560 MIMAT0011784 dme-miR-2279* 37244 CG11242 uuaaagugugugucuAUAAAUu |||||| aguuaugccauuuuuUAUUUAu 2 8 119 140 [dm3:2R:15373168-15373189:-] 0.5781 120 6 -5.04 -0.4367 MIMAT0011787 dme-miR-2280* 37244 CG11242 agucaaucgaaccuuCAUUUAa |||||| acaacaugauuauucGUAAAUu 2 8 182 203 [dm3:2R:15373105-15373126:-] 0.6314 120 6 -3.73 -0.2000 MIMAT0011787 dme-miR-2280* 37244 CG11242 agucaaucgaaccuuCAUUUAa |||||| uuaacucaaccguuuGUAAAUc 2 8 266 287 [dm3:2R:15373021-15373042:-] 0.5734 120 6 -2.77 -0.2024 MIMAT0011788 dme-miR-2281* 37244 CG11242 aacGUAGACGUCGACGUCUAUua ::| ||:| | |||||| guaUGUAUGUAUAU-CAGAUAuu 3 21 157 178 [dm3:2R:15373130-15373151:-] 0.6314 130 0 -11.18 -0.1511 MIMAT0011791 dme-miR-2283 37244 CG11242 uaacAGCAUAAGUACUA-UAAAAg | ||:||| || ||||| uuaaUGGUGUUCUCAAUCAUUUUg 2 20 230 253 [dm3:2R:15373055-15373078:-] 0.6314 123 0 -7.81 -1.1079 MIMAT0012199 dme-miR-2492 37244 CG11242 aaacuuUCGAGAGCU-GUUUUGUa | :| |: | :|||||| uuuuuuAUUUAUUAAUUAAAACAu 2 18 129 152 [dm3:2R:15373156-15373179:-] 0.6314 128 6 -6.10 -0.3217 MIMAT0012199 dme-miR-2492 37244 CG11242 aaacuuucgagagcuGUUUUGUa |||||:| caaccguuuguaaauCAAAAUAa 2 9 272 294 [dm3:2R:15373014-15373036:-] 0.5734 124 0 -6.40 -0.2413 MIMAT0012215 dme-miR-2500 37244 CG11242 gacucCAGGUGUGU-GUUUUAgg ||::::| | |||||| caaccGUUUGUAAAUCAAAAUaa 3 18 272 294 [dm3:2R:15373014-15373036:-] 0.5734 132 0 -7.32 -0.4968 MIMAT0000109 dme-miR-4 37244 CG11242 agUUACCA-ACAGAUCGAAAUa ||| | | : :|||||| uaAAUUCUAUAAUCGGCUUUAu 2 20 198 219 [dm3:2R:15373089-15373110:-] 0.6314 126 6 -8.06 -0.1497 MIMAT0000319 dme-miR-263a 37244 CG11242 cacuuaagaaggucacgGUAAUUg |||||| cauuuugcauuguuuuaCAUUAAc 2 8 247 270 [dm3:2R:15373038-15373061:-] 0.6024 120 6 -10.74 -0.1287 MIMAT0000338 dme-miR-277 37244 CG11242 acagcauggucUAUCACGUAAau || |||||| uguucucaaucAUUUUGCAUUgu 3 13 237 259 [dm3:2R:15373049-15373071:-] 0.6314 124 0 -6.80 -0.2089 MIMAT0000347 dme-miR-283 37244 CG11242 ucuUA-AUGGUCGACUAUAAau || || :| | |||||| uguAUGUA-UAUCAGAUAUUcu 3 19 160 180 [dm3:2R:15373128-15373148:-] 0.6314 127 0 -6.05 -0.1622 MIMAT0000350 dme-miR-34 37244 CG11242 guGUUGGUCGAUUGGUGUG-ACGGu |||:| | |:|:||| |||| caCAAUC-UCGCAUCGCACAUGCCa 2 23 30 53 [dm3:2R:15373255-15373278:-] 0.5248 124 0 -27.13 -0.4850 MIMAT0000355 dme-miR-210 37244 CG11242 aucggcgACAGUGU-GCGUGUu | ||:|| |||||| cacacaaUCUCGCAUCGCACAu 2 15 28 49 [dm3:2R:15373259-15373280:-] 0.5248 122 6 -15.39 -0.3247 MIMAT0000407 dme-miR-315 37244 CG11242 cgAAAGACUCGUUGUUAGUUUu |||:| :| :|||:||| auUUUUUAUUUAUUAAUUAAAa 2 21 128 149 [dm3:2R:15373159-15373180:-] 0.6314 140 0 -7.68 -0.1572 MIMAT0000407 dme-miR-315 37244 CG11242 cgaaagacucguugUUAGUUUu ||||||| cucaaccguuuguaAAUCAAAa 2 9 270 291 [dm3:2R:15373017-15373038:-] 0.5734 140 7 -8.83 -1.2821 MIMAT0000409 dme-miR-317 37244 CG11242 ugaccuaugguggucgaCACAAGu |||||| ucauaacugauuuaaugGUGUUCu 2 8 219 242 [dm3:2R:15373066-15373089:-] 0.6314 120 6 -14.82 -0.2243 MIMAT0000413 dme-miR-iab-4-3p 37244 CG11242 caaUGCAUAUG-ACUUCCAUAUGGc |: |||:: || | |||||:| aacAUCUAUGUAUGUAUGUAUAUCa 2 22 148 172 [dm3:2R:15373136-15373160:-] 0.6314 144 0 -12.12 -0.1376 MIMAT0005463 dme-miR-iab-4as-5p 37244 CG11242 gccAUAUGGAAGUCAUAUGCAUu || | | | | ||| |||| ucuUACAACAUGAUUAUUCGUAa 2 21 178 200 [dm3:2R:15373108-15373130:-] 0.6314 128 0 -7.99 -0.1760 MIMAT0005478 dme-miR-964 37244 CG11242 uucaauucgAGGGGAUAAGAuu || |||||| guauguauaUCAGAUAUUCUua 3 14 161 182 [dm3:2R:15373126-15373147:-] 0.6314 121 0 -6.17 -0.2122 MIMAT0005478 dme-miR-964 37244 CG11242 uucaauucgaggggaUAAGAUu |||||| caugauuauucguaaAUUCUAu 2 8 186 207 [dm3:2R:15373101-15373122:-] 0.6314 120 6 -7.31 -0.1957 MIMAT0005501 dme-miR-927 37244 CG11242 ccAUUUCGCAUCCUUAAGAUuu | | |||| ||||||| gaUUAUUCGUA--AAUUCUAua 3 21 189 208 [dm3:2R:15373100-15373119:-] 0.6314 133 0 -9.13 -0.2450

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TBCB RAID00141130 dme-miR-iab-4-3p miRNA MIMAT0000413 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID00991355 dme-miR-277-3p miRNA MIMAT0000338 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID01030756 dme-miR-964-5p miRNA MIMAT0005478 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID01150953 dme-miR-210-3p miRNA MIMAT0000355 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID01716310 dme-miR-315-5p miRNA MIMAT0000407 TBCB mRNA 37244 Prediction 0.2202 TBCB RAID02221437 dme-miR-263a-5p miRNA MIMAT0000319 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID02726113 dme-miR-962-5p miRNA MIMAT0005476 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03213817 dme-miR-4-3p miRNA MIMAT0000109 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03237749 dme-miR-34-5p miRNA MIMAT0000350 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03282339 dme-miR-283-5p miRNA MIMAT0000347 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03323162 dme-miR-iab-8-5p miRNA MIMAT0005463 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03595331 dme-miR-927-5p miRNA MIMAT0005501 TBCB mRNA 37244 Prediction 0.1828 TBCB RAID03692695 dme-miR-317-3p miRNA MIMAT0000409 TBCB mRNA 37244 Prediction 0.1828