DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005481 dme-miR-966 37462 CG10080 gguGUGUCGGGUGUUGGGUGu || | || ||||| ||| aucCA-AACCAACAACACACa 2 19 12 31 [dm3:2R:17518394-17518413:+] 0.4982 128 0 -16.88 -0.1016 MIMAT0005488 dme-miR-972 37462 CG10080 cgGAUUUAUAAGCAUAACAUGu :||| |||: ||||||| guUUAACAAUUUUCAUUGUACa 2 21 321 342 [dm3:2R:17518703-17518724:+] 0.5788 160 7 -12.27 -1.1006 MIMAT0005488 dme-miR-972 37462 CG10080 cggauuUAUAAGC--AUAACAUGu || ||:| | |||||| auuguuAUUUUUGAAUUUUGUACa 2 17 198 221 [dm3:2R:17518580-17518603:+] 0.4829 123 6 -9.87 -0.2282 MIMAT0005489 dme-miR-973 37462 CG10080 uuUUAGCUUCAAGUUGGUGGUUGGu :|||| | ::| :||||||: gaGAUCGCAUAAUGAGUACCAACUg 2 24 275 299 [dm3:2R:17518657-17518681:+] 0.4877 143 0 -17.07 -0.1490 MIMAT0005510 dme-miR-992 37462 CG10080 gaauCAUGGUCUUUGCACAUGa | |: | | :|||||| gccuGAAUAAAAUUUGUGUACu 2 19 344 365 [dm3:2R:17518726-17518747:+] 0.5788 130 6 -14.80 -0.2084 MIMAT0005021 dme-miR-1008 37462 CG10080 acauuUGUGUUUUUCGACAcu | |:| ||||||| acucuAGAUAUUAAGCUGUua 3 17 164 184 [dm3:2R:17518546-17518566:+] 0.4905 132 0 -11.99 -0.1264 MIMAT0005022 dme-miR-1009 37462 CG10080 gacUUUACAUU----GUUAAAAACUcu |||| ||| : |||||||| uuaAAAUCUAAAUUGUUAUUUUUGAau 3 21 187 213 [dm3:2R:17518569-17518595:+] 0.4829 139 0 -7.29 -0.1072 MIMAT0005026 dme-miR-1013 37462 CG10080 gcUCAAGCCGUAUGAAAAUa | ||: |::|||||||: aaAAUUU-GUGUACUUUUGc 2 19 352 370 [dm3:2R:17518734-17518752:+] 0.5788 140 0 -7.97 -0.2871 MIMAT0011790 dme-miR-2282 37462 CG10080 uaaGAUAAAAAUCGAGUGGCUa | | | || :||||||| acaCAACUGUUCCUUCACCGAu 2 20 29 50 [dm3:2R:17518411-17518432:+] 0.4982 151 7 -17.72 -0.3818 MIMAT0012199 dme-miR-2492 37462 CG10080 aaACUUUCGAGAGCUGUUUUGUa || | :|: | |:|||||| ugUGUACUUUUGCUAUAAAACAa 2 22 358 380 [dm3:2R:17518740-17518762:+] 0.5788 141 6 -11.87 -0.3739 MIMAT0012215 dme-miR-2500 37462 CG10080 gacUCCA-GGUGUGUGUUUUAGg || | ::|||: :|||||| uuaAGCUGUUACAU-UAAAAUCu 2 20 174 195 [dm3:2R:17518556-17518577:+] 0.4905 136 6 -12.80 -0.1192 MIMAT0012215 dme-miR-2500 37462 CG10080 gacuccaggugugugUUUUAGg |||||| ugaguaccaacuguaAAAAUCa 2 8 287 308 [dm3:2R:17518669-17518690:+] 0.5356 120 6 -12.70 -0.2271 MIMAT0000110 dme-miR-5 37462 CG10080 guaUAGUGU-UGCUAGCAAGGAAa | |||| || | :||||||| aacAACACACACAACUGUUCCUUc 2 21 21 44 [dm3:2R:17518403-17518426:+] 0.4982 163 7 -18.71 -0.4419 MIMAT0000319 dme-miR-263a 37462 CG10080 cacuuaagaaggucacgGUAAUUg |||||| uagauauuaagcuguuaCAUUAAa 2 8 168 191 [dm3:2R:17518550-17518573:+] 0.4905 120 6 -7.59 -0.2429 MIMAT0000391 dme-miR-305 37462 CG10080 gucucguggacuacuuCAUGUUa |||||| guuauuuuugaauuuuGUACAAa 2 8 201 223 [dm3:2R:17518583-17518605:+] 0.4829 120 6 -7.83 -0.2097 MIMAT0000407 dme-miR-315 37462 CG10080 cgaaagacuCGUUGUUAGUUUu |:|| ||||||| guaccaacuGUAAAAAUCAAAu 2 14 290 311 [dm3:2R:17518672-17518693:+] 0.5356 153 7 -8.87 -1.1971 MIMAT0000407 dme-miR-315 37462 CG10080 cgaAAGACUCGUUGUUAGUUUu ||:|| || ||||||| gaaUUUUGUACA--AAUCAAAu 2 20 210 229 [dm3:2R:17518592-17518611:+] 0.4829 152 7 -8.68 -0.7654 MIMAT0005027 dme-miR-1014 37462 CG10080 gacguuuacuuuuACUUAAAa ||||||| aaauuguuauuuuUGAAUUUu 2 9 196 216 [dm3:2R:17518578-17518598:+] 0.4829 140 7 -6.41 -1.0543

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mahj RAID00671071 dme-miR-1014-3p miRNA MIMAT0005027 mahj mRNA 37462 Prediction 0.2202 mahj RAID01127109 dme-miR-5-5p miRNA MIMAT0000110 mahj mRNA 37462 Prediction 0.2202 mahj RAID01835407 dme-miR-315-5p miRNA MIMAT0000407 mahj mRNA 37462 Prediction 0.2202 mahj RAID02293451 dme-miR-263a-5p miRNA MIMAT0000319 mahj mRNA 37462 Prediction 0.1828 mahj RAID02812683 dme-miR-989-3p miRNA MIMAT0005506 mahj mRNA 37462 Prediction 0.1828 mahj RAID03349879 dme-miR-283-5p miRNA MIMAT0000347 mahj mRNA 37462 Prediction 0.1828 mahj RAID03517147 dme-miR-972-3p miRNA MIMAT0005488 mahj mRNA 37462 Prediction 0.1828 mahj RAID03804439 dme-miR-305-5p miRNA MIMAT0000391 mahj mRNA 37462 Prediction 0.2202