DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 37601 RYBP uggucauggaCUACAUUAUGAGu || | ||||||| gcaaacaauaGACG-AAUACUCg 2 14 761 782 [dm3:2R:18560209-18560230:+] 0.5557 143 7 -11.99 -0.2354 MIMAT0000343 dme-miR-280 37601 RYBP auaGUAA-AGUAUACGUUGCAUUUAUgu |||| | | || || |||||| aagCAUUAUAAAAUACA--UUAAAUAaa 3 25 1231 1256 [dm3:2R:18560679-18560704:+] 0.5857 136 0 -7.87 -0.1587 MIMAT0000363 dme-miR-288 37601 RYBP guacuUUACUUUAGCUGUACUUu ||||||| ||||||| caaacAAUGAAA--AACAUGAAu 2 19 853 873 [dm3:2R:18560301-18560321:+] 0.5557 159 7 -12.05 -1.1713 MIMAT0000363 dme-miR-288 37601 RYBP guacuuuacuuuagcUGUACUUu ||||||| agauuauuuagccacACAUGAAc 2 9 953 975 [dm3:2R:18560401-18560423:+] 0.5557 140 7 -6.48 -0.3595 MIMAT0000364 dme-miR-289 37601 RYBP ucagcguccgagGUGAAUUUAUAAAu ::||| :|||||| ugguuuauaaagUGCUU-GAUAUUUg 2 15 917 941 [dm3:2R:18560365-18560389:+] 0.5557 132 6 -8.89 -0.1205 MIMAT0005489 dme-miR-973 37601 RYBP uuUUAGCUUCAAGUUG--GUGGUUGGu |: | :| || |:| :||||||| caAGACUGA-UUAAGCGUUACCAACCa 2 24 656 681 [dm3:2R:18560104-18560129:+] 0.5863 148 7 -19.06 -1.0546 MIMAT0005509 dme-miR-991 37601 RYBP ugAAAGGUUUG-AUGUUGAAAuu || : ||:| || |||||| aaUUGUAAAGCGUA-AACUUUua 3 21 1209 1230 [dm3:2R:18560657-18560678:+] 0.5557 133 0 -8.00 -0.1182 MIMAT0005510 dme-miR-992 37601 RYBP gaAU-CAUGGUCUUUGCACAUGa || |||: | : ||||||| acUAUGUAUAACCGCCGUGUACa 2 21 400 422 [dm3:2R:18559848-18559870:+] 0.5804 151 7 -14.84 -0.7169 MIMAT0005018 dme-miR-1005 37601 RYBP gacGCUUAAUUUCU-AAGGUCu | |:|| | || |||||| ccaCUAGUUCAUGACUUCCAGc 2 19 179 200 [dm3:2R:18559627-18559648:+] 0.5706 126 6 -10.17 -0.1791 MIMAT0005022 dme-miR-1009 37601 RYBP gacUUUAC--AUUGUUA----AAAACUCu ||:|| |:|:| | ||||||| auaAAGUGCUUGAUAUUUGUAUUUUGAGa 2 21 923 951 [dm3:2R:18560371-18560399:+] 0.5557 146 7 -11.88 -1.1700 MIMAT0005022 dme-miR-1009 37601 RYBP gacuUUAC--AUUGU--UAAAAACUcu |||| |||| | |||||| aaacAAUGAAAAACAUGAAUUUUGAua 3 20 854 880 [dm3:2R:18560302-18560328:+] 0.5557 133 0 -6.90 -0.1069 MIMAT0005025 dme-miR-1012 37601 RYBP gauaccccuuuuAGAAACUGAUu |:|||||||| acugcccuuuuuUUUUUGACUAg 2 12 546 568 [dm3:2R:18559994-18560016:+] 0.5863 151 7 -13.50 -1.0561 MIMAT0005026 dme-miR-1013 37601 RYBP gcucaagcCGUAUGAAAAUa |:| ||||||| uguaaagcGUAAACUUUUAa 2 13 1212 1231 [dm3:2R:18560660-18560679:+] 0.5557 148 7 -7.74 -1.2254 MIMAT0011784 dme-miR-2279* 37601 RYBP uuAAAGUGUG--UGU--CUAUAAAUu ||| |:|: ||: :|||||| auUUUGAUAUGAACGAUUGUAUUUAa 2 21 872 897 [dm3:2R:18560320-18560345:+] 0.5557 130 6 -7.17 -0.1689 MIMAT0011784 dme-miR-2279* 37601 RYBP uuAAAGUGUGUGUCU-AUAAAUu |||:: | |:||| |||||| uaUUUUG-AGAUAGAUUAUUUAg 2 21 942 963 [dm3:2R:18560390-18560411:+] 0.5557 130 6 -8.99 -0.5042 MIMAT0011788 dme-miR-2281* 37601 RYBP aacguagacgucgacGUCUAUua |||||| uuuaauauuggauaaCAGAUAua 3 9 893 915 [dm3:2R:18560341-18560363:+] 0.5557 120 0 -10.22 -0.1217 MIMAT0011789 dme-miR-2281 37601 RYBP cgUUAUGACGUCUA-UGUCUAu ||||:|| ||| |||||| uuAAUAUUG--GAUAACAGAUa 2 20 894 913 [dm3:2R:18560342-18560361:+] 0.5557 132 6 -16.31 -1.1687 MIMAT0012196 dme-miR-2489 37601 RYBP ugacGUUUAUGUUGUAUGUUAu |: | || |::|||||| uuauCGUAAAC-AUGUACAAUu 2 19 1049 1069 [dm3:2R:18560497-18560517:+] 0.5557 136 6 -7.49 -0.1050 MIMAT0012196 dme-miR-2489 37601 RYBP ugaCGUUUAUGUUGUAUGUUAu || | ||:|| ||||| | aaaGC-AUUAUAAAAUACAUUa 2 20 1230 1250 [dm3:2R:18560678-18560698:+] 0.5857 129 0 -9.58 -0.1353 MIMAT0012198 dme-miR-2491 37601 RYBP ucGUUGA--CGU-UUCCGUUGUCGc ||::| ||| | ||||||| gcCAGUUGAGCAUUAAUCAACAGCa 2 21 1100 1124 [dm3:2R:18560548-18560572:+] 0.5557 146 7 -14.38 -1.0580 MIMAT0012206 dme-miR-2496* 37601 RYBP augcuacCGGAGAGUGUGUGC-GUg ||| | | |||||| || aauuaaaGCCGCACUCACACGACAa 2 18 1159 1183 [dm3:2R:18560607-18560631:+] 0.5557 125 0 -19.94 -0.6315 MIMAT0012209 dme-miR-2497 37601 RYBP gacguuUGUAACAUUUAC-AACa ::||| ||||| ||| caguuuGUAUUCCAAAUGCUUGg 2 17 1078 1100 [dm3:2R:18560526-18560548:+] 0.5557 120 0 -8.01 -0.4456 MIMAT0012211 dme-miR-2498 37601 RYBP uucauucugcccuuaCGGUCAAa ||||||| uauuccaaaugcuugGCCAGUUg 2 9 1085 1107 [dm3:2R:18560533-18560555:+] 0.5557 140 7 -11.35 -0.2644 MIMAT0012216 dme-miR-2501 37601 RYBP aaucggguccgugaGGUUUGAAUg | ||||||| gacaaagacaaagaCAAAACUUAa 2 11 1127 1150 [dm3:2R:18560575-18560598:+] 0.5557 142 7 -10.43 -0.9658 MIMAT0012531 dme-miR-10-3p 37601 RYBP uuugGAGAGA-UCUUGGCUUAAac :|:| | || ::|||||| uuugUUUUGUAAGUGUCGAAUUaa 3 20 441 464 [dm3:2R:18559889-18559912:+] 0.5804 134 0 -9.65 -0.1455 MIMAT0012531 dme-miR-10-3p 37601 RYBP uuuGGAGAGAUCUUGGC-UUAAAc :|| ||| | |:|| ||||| aucUCUGUCUCGUAUCGUAAUUUu 2 21 324 347 [dm3:2R:18559772-18559795:+] 0.5804 132 0 -12.11 -0.6947 MIMAT0000120 dme-miR-14 37601 RYBP auccucucucuUUUUCUGACu | ||||||| uuuguuuguauACAAGACUGa 2 11 644 664 [dm3:2R:18560092-18560112:+] 0.5863 142 7 -10.83 -0.9336 MIMAT0000319 dme-miR-263a 37601 RYBP cacuuaagaaggucacgGUAAUUg |||||| uaaagcauuauaaaauaCAUUAAa 2 8 1229 1252 [dm3:2R:18560677-18560700:+] 0.5857 120 6 -4.66 -0.4700 MIMAT0000338 dme-miR-277 37601 RYBP acaGCAUGGUCUAUCACGUAAAu || ::| ||| ||||||| cggCGAGUC-GAU--UGCAUUUa 2 21 233 252 [dm3:2R:18559681-18559700:+] 0.5755 147 7 -14.21 -0.5453 MIMAT0000347 dme-miR-283 37601 RYBP ucuUAAUGGUCG-ACUAUAAAu || | || |||||||| uuuAUAAAGUGCUUGAUAUUUg 2 19 920 941 [dm3:2R:18560368-18560389:+] 0.5557 149 7 -9.57 -1.0035 MIMAT0000348 dme-miR-284 37601 RYBP guuaacgaccuuaGUUCAACGACUGAAGu | |||| ||||||| agccaagcccccaCUAGUUCAUGACUUCc 2 17 169 197 [dm3:2R:18559617-18559645:+] 0.5706 156 7 -12.84 -0.2223 MIMAT0000350 dme-miR-34 37601 RYBP guGUUGGUCGAUUGGUGUGACGGu :|||:| :|| :| |||||| ugUAACUA-UUA--UAAACUGCCc 2 23 532 552 [dm3:2R:18559980-18560000:+] 0.5863 125 6 -14.38 -0.1529 MIMAT0000390 dme-miR-304 37601 RYBP gagUGUAAAUGUUUAACUCUAau |:||||::| ||||||| uugAUAUUUGUAUUUUGAGAUag 3 21 932 954 [dm3:2R:18560380-18560402:+] 0.5557 152 0 -15.65 -0.1038 MIMAT0000390 dme-miR-304 37601 RYBP gaguguAAAUGUUUAACUC-UAAu || :| |:||||| ||| aaaugcUUGGCCAGUUGAGCAUUa 2 18 1091 1114 [dm3:2R:18560539-18560562:+] 0.5557 125 0 -10.78 -0.7268 MIMAT0000391 dme-miR-305 37601 RYBP guCUCGUGG-ACUACUUCAUGUUa || :|:| | | | |||||| ugGAUUAUCGUAAACAUGUACAAu 2 22 1045 1068 [dm3:2R:18560493-18560516:+] 0.5557 124 6 -11.56 -0.1103 MIMAT0000406 dme-miR-314 37601 RYBP ggcuugaauaaccgAGCUUAu |||||| uuguuuuguaagugUCGAAUu 2 8 442 462 [dm3:2R:18559890-18559910:+] 0.5804 120 6 -10.05 -0.1243 MIMAT0000408 dme-miR-316 37601 RYBP gcgGUCAUUCGCCUUUUUCUGu ||| || | || |||||| caaCAGCAA-C-GACAAAGACa 2 20 1117 1136 [dm3:2R:18560565-18560584:+] 0.5557 127 6 -13.17 -0.1007 MIMAT0005468 dme-miR-193 37601 RYBP caacccugaAUCAUCCGGUCAu |: | ||||||| uauuccaaaUGCUUGGCCAGUu 2 14 1085 1106 [dm3:2R:18560533-18560554:+] 0.5557 145 7 -13.30 -0.7244 MIMAT0005468 dme-miR-193 37601 RYBP caacccugaAUCAUCCGGU-CAu || ||||||| || guuaccaagUAUUAGGCCACGUu 2 14 134 156 [dm3:2R:18559582-18559604:+] 0.5706 121 0 -12.45 -0.6885 MIMAT0005471 dme-miR-958 37601 RYBP uuucaUCUUAUCUUCUUA-GAGu | |||||| |||| ||| agcaaACAAUAGACGAAUACUCg 2 18 760 782 [dm3:2R:18560208-18560230:+] 0.5557 133 0 -13.26 -0.4195 MIMAT0005474 dme-miR-960 37601 RYBP cgauacGUUA-GACCUUAUGAGu |||| |||||||| agcaaaCAAUAGACGAAUACUCg 2 17 760 782 [dm3:2R:18560208-18560230:+] 0.5557 147 7 -15.56 -0.2435 MIMAT0005478 dme-miR-964 37601 RYBP uucaauUCGAGGGG--AUAAGAUu |||||||| ||||||| gcccccAGCUCCCCAAUAUUCUAc 2 17 23 46 [dm3:2R:18559471-18559494:+] 0.5530 167 7 -21.43 -0.1610 MIMAT0005483 dme-miR-1002 37601 RYBP agcgggAAACAUAGGUGAUGA-AUu ||| ||::||||| || uuguaaUUUAAUUCUGCUACUCUAa 2 19 350 374 [dm3:2R:18559798-18559822:+] 0.5804 122 0 -12.54 -1.0439 MIMAT0005493 dme-miR-977 37601 RYBP aaucuguuGCACUUAUAGAGu | |||||||||| augaguucCCUGAAUAUCUCu 2 14 309 329 [dm3:2R:18559757-18559777:+] 0.5804 157 7 -13.40 -0.5182 MIMAT0005497 dme-miR-981 37601 RYBP acgUCCAAAGCAGCUGUUGCUu | | | | |:|||||||| aaaAUGCUGC-UUGACAACGAa 2 20 569 589 [dm3:2R:18560017-18560037:+] 0.5863 153 7 -17.85 -0.5277 MIMAT0005501 dme-miR-927 37601 RYBP ccaUUUCGCAUCCUUAAGAUUu ||: :||| |||||||| uacAAGUUGUA--AAUUCUAAg 2 20 69 88 [dm3:2R:18559517-18559536:+] 0.5706 156 7 -11.18 -0.5681 MIMAT0005507 dme-miR-137 37601 RYBP gaUGCACAU-AAGAGUUCGUUAu :||| | ||:| ||||| | aaGCGUAAACUUUUAAAGCAUUa 2 21 1216 1238 [dm3:2R:18560664-18560686:+] 0.5557 127 0 -9.09 -0.1198 MIMAT0005516 dme-miR-252 37601 RYBP gaggacgccguGAUCAUGAAUc :| ||||||| aaaaagagaauUUUGUACUUAg 2 12 790 811 [dm3:2R:18560238-18560259:+] 0.5557 143 7 -11.28 -0.6164 MIMAT0005019 dme-miR-1006 37601 RYBP gauacuUAUUCUUUAGCUUAAau :|||| :||||||| uguuuuGUAAG-UGUCGAAUUaa 3 18 443 464 [dm3:2R:18559891-18559912:+] 0.5804 135 0 -11.46 -0.1427 MIMAT0005024 dme-miR-1011 37601 RYBP gacgcUCGCUAAACUUGGU-UAUu |||| | ||||| ||| gauuaAGCGUUACCAACCAGAUAu 2 19 663 686 [dm3:2R:18560111-18560134:+] 0.5537 122 0 -11.77 -0.4280 MIMAT0005027 dme-miR-1014 37601 RYBP gacguUUACUUU---UACUUAAAa ||||||| |||||||| caaacAAUGAAAAACAUGAAUUUu 2 17 853 876 [dm3:2R:18560301-18560324:+] 0.5557 163 7 -12.18 -1.0070

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RYBP RAID00069177 dme-miR-992-3p miRNA MIMAT0005510 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00248876 dme-miR-960-5p miRNA MIMAT0005474 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID00319248 dme-miR-1002-5p miRNA MIMAT0005483 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00411731 dme-miR-304-5p miRNA MIMAT0000390 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00432489 dme-miR-1009-3p miRNA MIMAT0005022 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00503855 dme-miR-1014-3p miRNA MIMAT0005027 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID00632372 dme-miR-1006-3p miRNA MIMAT0005019 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00682665 dme-miR-14-3p miRNA MIMAT0000120 RYBP mRNA 37601 Prediction 0.2381 RYBP RAID00693981 dme-miR-993-3p miRNA MIMAT0005512 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID00781817 dme-miR-316-5p miRNA MIMAT0000408 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID00916533 dme-miR-277-3p miRNA MIMAT0000338 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID00949809 dme-miR-964-5p miRNA MIMAT0005478 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID01329358 dme-miR-1013-3p miRNA MIMAT0005026 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID01443000 dme-miR-977-3p miRNA MIMAT0005493 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID01944838 dme-miR-284-3p miRNA MIMAT0000348 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02088814 dme-miR-8-3p miRNA MIMAT0000113 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID02095825 dme-miR-314-3p miRNA MIMAT0000406 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02105513 dme-miR-263a-5p miRNA MIMAT0000319 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02116974 dme-miR-1007-3p miRNA MIMAT0005020 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02171784 dme-miR-1012-3p miRNA MIMAT0005025 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02325942 dme-miR-981-3p miRNA MIMAT0005497 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID02430461 dme-miR-954-5p miRNA MIMAT0005465 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID02540486 dme-miR-252-5p miRNA MIMAT0005516 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID02672543 dme-miR-137-3p miRNA MIMAT0005507 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID02871225 dme-miR-973-5p miRNA MIMAT0005489 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03028794 dme-miR-1011-3p miRNA MIMAT0005024 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03121276 dme-miR-34-5p miRNA MIMAT0000350 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03156525 dme-miR-10-3p miRNA MIMAT0012531 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03199372 dme-miR-283-5p miRNA MIMAT0000347 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID03270000 dme-miR-956-3p miRNA MIMAT0005469 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03309293 dme-miR-7-5p miRNA MIMAT0000112 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03512863 dme-miR-927-5p miRNA MIMAT0005501 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID03595324 dme-miR-305-5p miRNA MIMAT0000391 RYBP mRNA 37601 Prediction 0.1828 RYBP RAID03911039 dme-miR-958-3p miRNA MIMAT0005471 RYBP mRNA 37601 Prediction 0.2202 RYBP RAID04034036 dme-miR-193-3p miRNA MIMAT0005468 RYBP mRNA 37601 Prediction 0.2202