DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 37959 CG3894 ucAGCGUCCGAGGUGAAUUUAUAAAu |:|:| :||::: | |||||| auUUGUAAUUUCUGUAGAUAUAUUUu 2 25 218 243 [dm3:2R:20654006-20654031:+] 0.5653 132 6 -8.93 -0.1123 MIMAT0005521 dme-miR-1001 37959 CG3894 acuaggaacccuCAAAUGGGu |||||||| ucgugauagucuGUUUACCCa 2 10 86 106 [dm3:2R:20653874-20653894:+] 0.5840 145 7 -16.01 -0.9773 MIMAT0011784 dme-miR-2279* 37959 CG3894 uuAAAGUGUGUGUCUAUAAAuu |||| :::| | |||||| aaUUUC-UGUAGAUAUAUUUua 3 21 224 244 [dm3:2R:20654012-20654032:+] 0.5653 138 0 -7.49 -0.1724 MIMAT0011784 dme-miR-2279* 37959 CG3894 uuAAAGUGUGUGUCUAUAA-AUu || | ||:|:| ||||| || guUUACCCAUAUAUAUAUUGUAu 2 21 98 120 [dm3:2R:20653886-20653908:+] 0.5840 132 0 -7.51 -0.5639 MIMAT0011791 dme-miR-2283 37959 CG3894 uaacAGCAUAAGUACUAUAAAAg |: |:| || ||||||| uaauUUCUGUAGAU-AUAUUUUa 2 20 223 244 [dm3:2R:20654011-20654032:+] 0.5653 149 7 -5.96 -1.2336 MIMAT0012195 dme-miR-307-as 37959 CG3894 cugaGUGAGUUGGACCCA-CACu || | |:|:||||| ||| ugugCA-UGAGCUUGGGUCGUGa 2 19 70 91 [dm3:2R:20653858-20653879:+] 0.5840 124 0 -22.39 -0.9609 MIMAT0012202 dme-miR-2494* 37959 CG3894 aagggUUAGACCACGUGAAUg |:|: || |||||| auguaAGUUAAGUCCACUUAa 2 17 434 454 [dm3:2R:20654222-20654242:+] 0.5297 124 6 -8.79 -0.1192 MIMAT0000108 dme-miR-3 37959 CG3894 acucugugugaaaCGGGUCACu |||||||| ucuaugaaauaggGCCCAGUGa 2 10 18 39 [dm3:2R:20653806-20653827:+] 0.5840 145 7 -19.56 -0.5716 MIMAT0000399 dme-miR-308 37959 CG3894 gagugucAUAUU-AGGACA-CUAa |:||| |:|||| ||| uuauauuUGUAAUUUCUGUAGAUa 2 16 214 237 [dm3:2R:20654002-20654025:+] 0.5653 122 0 -11.96 -1.2477 MIMAT0000401 dme-miR-309 37959 CG3894 auccugUUUGAAAUGGGUCACg |||: :||||||| ucuaugAAAUAGGGCCCAGUGa 2 17 18 39 [dm3:2R:20653806-20653827:+] 0.5840 148 7 -17.71 -0.5644 MIMAT0000410 dme-miR-318 37959 CG3894 acucUA-UUUGUUUCGGGUCACu || |||:|::|||||||| cucuAUGAAAUAGGGCCCAGUGa 2 19 17 39 [dm3:2R:20653805-20653827:+] 0.5840 169 7 -26.16 -0.5608 MIMAT0000412 dme-miR-iab-4-5p 37959 CG3894 aguccUAUGUAAGUCAUAUGCa |||:|| : ||||||| cccauAUAUAUAUUGUAUACGc 2 18 103 124 [dm3:2R:20653891-20653912:+] 0.5840 161 7 -12.90 -0.7849 MIMAT0005492 dme-miR-976 37959 CG3894 cguaacUACUAUUGAUU-AGGUu ||| |::||| |||| ugcuauAUGUAAGUUAAGUCCAc 2 17 428 450 [dm3:2R:20654216-20654238:+] 0.5297 120 0 -8.15 -1.0992 MIMAT0005504 dme-miR-987 37959 CG3894 guaguuagGUCUGAUAAAUGAAAu :| |:| | |||||| ucuguagaUAUAUUUUAUACUUUg 2 17 228 251 [dm3:2R:20654016-20654039:+] 0.5735 124 6 -10.31 -0.1065 MIMAT0005020 dme-miR-1007 37959 CG3894 acguuugUCA-AUUAACUCGAAu ||| |: ||||||| uuggggaAGUGUGCAUGAGCUUg 2 16 61 83 [dm3:2R:20653849-20653871:+] 0.5840 146 7 -13.84 -0.3061 MIMAT0005024 dme-miR-1011 37959 CG3894 gacgcucGCUAAACUUGGUUAUu | | || ||||||| uuugguuCUAGUU--ACCAAUAc 2 17 248 268 [dm3:2R:20654036-20654056:+] 0.5735 141 7 -8.71 -0.8272

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG3894 RAID00167317 dme-miR-3-3p miRNA MIMAT0000108 CG3894 mRNA 37959 Prediction 0.2202 CG3894 RAID00396933 dme-mir-iab-4 miRNA MI0000432 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID00417595 dme-miR-1001-5p miRNA MIMAT0005521 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID00604387 dme-miR-971-3p miRNA MIMAT0005487 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID01009257 dme-miR-987-5p miRNA MIMAT0005504 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID01193774 dme-miR-309-3p miRNA MIMAT0000401 CG3894 mRNA 37959 Prediction 0.2202 CG3894 RAID01376654 dme-miR-318-3p miRNA MIMAT0000410 CG3894 mRNA 37959 Prediction 0.2202 CG3894 RAID01517780 dme-miR-976-3p miRNA MIMAT0005492 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID01799682 dme-miR-iab-4-5p miRNA MIMAT0000412 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID02113830 dme-miR-308-3p miRNA MIMAT0000399 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID02354002 dme-miR-1011-3p miRNA MIMAT0005024 CG3894 mRNA 37959 Prediction 0.2202 CG3894 RAID02770247 dme-miR-961-5p miRNA MIMAT0005475 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID02900353 dme-miR-1013-3p miRNA MIMAT0005026 CG3894 mRNA 37959 Prediction 0.1828 CG3894 RAID03094630 dme-miR-1007-3p miRNA MIMAT0005020 CG3894 mRNA 37959 Prediction 0.2202