DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 38021 p130CAS caCGUUUGCUAAAAGUUGUGu |::|| | ||||||||: uaGUGAA-GCAUUUCAACAUa 2 20 333 352 [dm3:3L:174241-174260:+] 0.5189 141 0 -15.77 -0.1002 MIMAT0005465 dme-miR-954 38021 p130CAS ugugUGUUGC--GUUGUGG-GUCu | ||:| ||:|||| ||| ucugAAAAUGCACAGCACCACAGc 2 18 181 204 [dm3:3L:174089-174112:+] 0.4767 120 0 -16.52 -0.1947 MIMAT0005465 dme-miR-954 38021 p130CAS ugugUGUUGC--GUUGUGG-GUCu | ||:| ||:|||| ||| ucugAAAAUGCACAGCACCACAGc 2 18 181 204 [dm3:3L:174089-174112:+] 0.4767 120 0 -16.52 -0.1961 MIMAT0005465 dme-miR-954 38021 p130CAS ugugUGUUGC--GUUGUGG-GUCu | ||:| ||:|||| ||| ucugAAAAUGCACAGCACCACAGc 2 18 181 204 [dm3:3L:174089-174112:+] 0.4767 120 0 -16.52 -0.1955 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGC-AUAACAUGu |||:| | || |||||||| gcaUAAGU-UACGAUAUUGUACa 2 20 251 272 [dm3:3L:174159-174180:+] 0.4767 160 7 -16.30 -0.9513 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGCAUAACAUgu || |||| : |||||| gcaUAUAUAUAUAAAUUGUAaa 3 20 527 548 [dm3:3L:174435-174456:+] 0.4857 139 0 -5.83 -0.1031 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGC-AUAACAUGu |||:| | || |||||||| gcaUAAGU-UACGAUAUUGUACa 2 20 251 272 [dm3:3L:174159-174180:+] 0.4767 160 7 -16.30 -0.9537 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGCAUAACAUgu || |||| : |||||| gcaUAUAUAUAUAAAUUGUAaa 3 20 527 548 [dm3:3L:174435-174456:+] 0.4857 139 0 -5.83 -0.1018 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGC-AUAACAUGu |||:| | || |||||||| gcaUAAGU-UACGAUAUUGUACa 2 20 251 272 [dm3:3L:174159-174180:+] 0.4767 160 7 -16.30 -0.9526 MIMAT0005488 dme-miR-972 38021 p130CAS cggAUUUAUAAGCAUAACAUgu || |||| : |||||| gcaUAUAUAUAUAAAUUGUAaa 3 20 527 548 [dm3:3L:174435-174456:+] 0.4857 139 0 -5.83 -0.1023 MIMAT0005502 dme-miR-985 38021 p130CAS acgggcugguaaccUUGUAAAc ||||||| aaagauuuacccccAACAUUUu 2 9 464 485 [dm3:3L:174372-174393:+] 0.5189 140 7 -9.63 -0.2136 MIMAT0005502 dme-miR-985 38021 p130CAS acgggcugguaaccUUGUAAAc ||||||| aaagauuuacccccAACAUUUu 2 9 464 485 [dm3:3L:174372-174393:+] 0.5189 140 7 -9.63 -0.2153 MIMAT0005502 dme-miR-985 38021 p130CAS acgggcugguaaccUUGUAAAc ||||||| aaagauuuacccccAACAUUUu 2 9 464 485 [dm3:3L:174372-174393:+] 0.5189 140 7 -9.63 -0.2145 MIMAT0005521 dme-miR-1001 38021 p130CAS acUAGGAACCCUC-AAAUGGGu ||| || || ||||||| gaAUC--UGAAAGAUUUACCCc 2 20 457 476 [dm3:3L:174365-174384:+] 0.5189 147 7 -12.14 -0.6686 MIMAT0005521 dme-miR-1001 38021 p130CAS acUAGGAACCCUC-AAAUGGGu ||| || || ||||||| gaAUC--UGAAAGAUUUACCCc 2 20 457 476 [dm3:3L:174365-174384:+] 0.5189 147 7 -12.14 -0.6719 MIMAT0005521 dme-miR-1001 38021 p130CAS acUAGGAACCCUC-AAAUGGGu ||| || || ||||||| gaAUC--UGAAAGAUUUACCCc 2 20 457 476 [dm3:3L:174365-174384:+] 0.5189 147 7 -12.14 -0.6704 MIMAT0005022 dme-miR-1009 38021 p130CAS gaCUUUACAUUGUUAAAAACUCu | | |||:|:| ||||||| uuGCAUUGUGAUA--UUUUGAGc 2 22 154 174 [dm3:3L:174062-174082:+] 0.4767 158 7 -13.21 -0.6815 MIMAT0005022 dme-miR-1009 38021 p130CAS gaCUUUACAUUGUUAAAAACUCu | | |||:|:| ||||||| uuGCAUUGUGAUA--UUUUGAGc 2 22 154 174 [dm3:3L:174062-174082:+] 0.4767 158 7 -13.21 -0.6844 MIMAT0005022 dme-miR-1009 38021 p130CAS gaCUUUACAUUGUUAAAAACUCu | | |||:|:| ||||||| uuGCAUUGUGAUA--UUUUGAGc 2 22 154 174 [dm3:3L:174062-174082:+] 0.4767 158 7 -13.21 -0.6831 MIMAT0011791 dme-miR-2283 38021 p130CAS uaACAGCAUAAGUACUAUAAAAg | |:| ||| :||||||||| uaUUUUGCAUU-GUGAUAUUUUg 2 22 150 171 [dm3:3L:174058-174079:+] 0.4767 167 7 -9.70 -0.2223 MIMAT0011791 dme-miR-2283 38021 p130CAS uaacagcauaaguACUAUAAAAg | ||||||| cgccaauugccgcUUAUAUUUUg 2 11 134 156 [dm3:3L:174042-174064:+] 0.4738 142 7 -4.54 -0.2987 MIMAT0011791 dme-miR-2283 38021 p130CAS uaACAGCAUAAGUACUAUAAAAg | |:| ||| :||||||||| uaUUUUGCAUU-GUGAUAUUUUg 2 22 150 171 [dm3:3L:174058-174079:+] 0.4767 167 7 -9.70 -0.2239 MIMAT0011791 dme-miR-2283 38021 p130CAS uaacagcauaaguACUAUAAAAg | ||||||| cgccaauugccgcUUAUAUUUUg 2 11 134 156 [dm3:3L:174042-174064:+] 0.4738 142 7 -4.54 -0.3007 MIMAT0011791 dme-miR-2283 38021 p130CAS uaACAGCAUAAGUACUAUAAAAg | |:| ||| :||||||||| uaUUUUGCAUU-GUGAUAUUUUg 2 22 150 171 [dm3:3L:174058-174079:+] 0.4767 167 7 -9.70 -0.2232 MIMAT0011791 dme-miR-2283 38021 p130CAS uaacagcauaaguACUAUAAAAg | ||||||| cgccaauugccgcUUAUAUUUUg 2 11 134 156 [dm3:3L:174042-174064:+] 0.4738 142 7 -4.54 -0.2998 MIMAT0012196 dme-miR-2489 38021 p130CAS ugACGUUUAUGUUGUA-UGUUAu | |:|||| || || ||||| acUUCGAAUA-AA-AUAACAAUa 2 21 590 610 [dm3:3L:174498-174518:+] 0.4954 124 0 -13.46 -1.2715 MIMAT0012196 dme-miR-2489 38021 p130CAS ugACGUUUAUGUUGUA-UGUUAu | |:|||| || || ||||| acUUCGAAUA-AA-AUAACAAU- 2 21 590 609 [dm3:3L:174498-174517:+] 0.4954 124 0 -10.82 -1.2421 MIMAT0012199 dme-miR-2492 38021 p130CAS aaACUUUCGAGAGCU-GUUUUGUa || :| |:|:|| ||||||| auUGUGAUAUUUUGAGCAAAACAu 2 22 158 181 [dm3:3L:174066-174089:+] 0.4767 160 7 -15.63 -0.5230 MIMAT0012199 dme-miR-2492 38021 p130CAS aaACUUUCGAGAGCU-GUUUUGUa || :| |:|:|| ||||||| auUGUGAUAUUUUGAGCAAAACAu 2 22 158 181 [dm3:3L:174066-174089:+] 0.4767 160 7 -15.63 -0.5257 MIMAT0012199 dme-miR-2492 38021 p130CAS aaACUUUCGAGAGCU-GUUUUGUa || :| |:|:|| ||||||| auUGUGAUAUUUUGAGCAAAACAu 2 22 158 181 [dm3:3L:174066-174089:+] 0.4767 160 7 -15.63 -0.5245 MIMAT0012216 dme-miR-2501 38021 p130CAS aaUCGGGUC-CGUGAGGUUUGAAUg | :|:|| ||| :||||||| auACUCUAGAGCA---UAAACUUAg 2 23 375 396 [dm3:3L:174283-174304:+] 0.5189 149 7 -14.46 -0.4002 MIMAT0012216 dme-miR-2501 38021 p130CAS aaUCGGGUC-CGUGAGGUUUGAAUg | :|:|| ||| :||||||| auACUCUAGAGCA---UAAACUUAg 2 23 375 396 [dm3:3L:174283-174304:+] 0.5189 149 7 -14.46 -0.4029 MIMAT0012216 dme-miR-2501 38021 p130CAS aaUCGGGUC-CGUGAGGUUUGAAUg | :|:|| ||| :||||||| auACUCUAGAGCA---UAAACUUAg 2 23 375 396 [dm3:3L:174283-174304:+] 0.5189 149 7 -14.46 -0.4017 MIMAT0000112 dme-miR-7 38021 p130CAS uguuguuuuaguGAUCAGAAGGu | :||||||| gaggcguguagcCAGGUCUUCCa 2 12 30 52 [dm3:3L:173938-173960:+] 0.4709 143 7 -17.15 -0.1518 MIMAT0000112 dme-miR-7 38021 p130CAS uguuguuuuaguGAUCAGAAGGu | :||||||| gaggcguguagcCAGGUCUUCCa 2 12 30 52 [dm3:3L:173938-173960:+] 0.4709 143 7 -17.15 -0.1530 MIMAT0000112 dme-miR-7 38021 p130CAS uguuguuuuaguGAUCAGAAGGu | :||||||| gaggcguguagcCAGGUCUUCCa 2 12 30 52 [dm3:3L:173938-173960:+] 0.4709 143 7 -17.15 -0.1525 MIMAT0000113 dme-miR-8 38021 p130CAS cugUAGAAAUGGACUGUCAUAAu ||:| : | ||||||| uggAUUUCAGACAACCAGUAUUa 2 21 2 24 [dm3:3L:173910-173932:+] 0.5080 144 7 -12.26 -0.8479 MIMAT0000113 dme-miR-8 38021 p130CAS cugUAGAAAUGGACUGUCAUAAu ||:| : | ||||||| uggAUUUCAGACAACCAGUAUUa 2 21 2 24 [dm3:3L:173910-173932:+] 0.5080 144 7 -12.26 -1.0045 MIMAT0000113 dme-miR-8 38021 p130CAS cugUAGAAAUGGACUGUCAUAAu ||:| : | ||||||| uggAUUUCAGACAACCAGUAUUa 2 21 2 24 [dm3:3L:173910-173932:+] 0.5080 144 7 -12.26 -1.0170 MIMAT0000120 dme-miR-14 38021 p130CAS auccucucucuuUUUCUGAcu ||||||| gaacaauaaacuAAAGACUuc 3 10 574 594 [dm3:3L:174482-174502:+] 0.4740 125 0 -5.98 -0.1212 MIMAT0000120 dme-miR-14 38021 p130CAS auccucucucuuUUUCUGAcu ||||||| gaacaauaaacuAAAGACUuc 3 10 574 594 [dm3:3L:174482-174502:+] 0.4740 125 0 -5.98 -0.1861 MIMAT0000347 dme-miR-283 38021 p130CAS ucUUAAUGGUCG-ACUAUAAAu | || || : |||||||| auAUUUUGCAUUGUGAUAUUUu 2 20 149 170 [dm3:3L:174057-174078:+] 0.4767 150 7 -8.14 -0.5916 MIMAT0000347 dme-miR-283 38021 p130CAS ucUUAAUGGUCG-ACUAUAAAu | || || : |||||||| auAUUUUGCAUUGUGAUAUUUu 2 20 149 170 [dm3:3L:174057-174078:+] 0.4767 150 7 -8.14 -0.5944 MIMAT0000347 dme-miR-283 38021 p130CAS ucUUAAUGGUCG-ACUAUAAAu | || || : |||||||| auAUUUUGCAUUGUGAUAUUUu 2 20 149 170 [dm3:3L:174057-174078:+] 0.4767 150 7 -8.14 -0.5931 MIMAT0000348 dme-miR-284 38021 p130CAS guuaacgaccuuaguucaacgaCUGAAGu |||||| guaauaugaacaauaaacuaaaGACUUCg 2 8 567 595 [dm3:3L:174475-174503:+] 0.4740 120 6 -12.77 -0.2674 MIMAT0000348 dme-miR-284 38021 p130CAS guuaacgaccuuaguucaacgaCUGAAGu |||||| guaauaugaacaauaaacuaaaGACUUCg 2 8 567 595 [dm3:3L:174475-174503:+] 0.4740 120 6 -12.77 -0.1109 MIMAT0000348 dme-miR-284 38021 p130CAS guuaacgaccuuaguucaacgaCUGAAGu |||||| guaauaugaacaauaaacuaaaGACUUCg 2 8 567 595 [dm3:3L:174475-174503:+] 0.4740 120 6 -12.77 -0.3888 MIMAT0000350 dme-miR-34 38021 p130CAS guGUUGGUCGAUUGGUGU-GACGGu | |||| ||| ||| ||||| uaCCACCACAUAA--ACAUCUGCCu 2 23 400 422 [dm3:3L:174308-174330:+] 0.5189 127 0 -17.99 -0.7143 MIMAT0000350 dme-miR-34 38021 p130CAS guGUUGGUCGAUUGGUGU-GACGGu | |||| ||| ||| ||||| uaCCACCACAUAA--ACAUCUGCCu 2 23 400 422 [dm3:3L:174308-174330:+] 0.5189 127 0 -17.99 -0.7176 MIMAT0000350 dme-miR-34 38021 p130CAS guGUUGGUCGAUUGGUGU-GACGGu | |||| ||| ||| ||||| uaCCACCACAUAA--ACAUCUGCCu 2 23 400 422 [dm3:3L:174308-174330:+] 0.5189 127 0 -17.99 -0.7161 MIMAT0000406 dme-miR-314 38021 p130CAS ggcUUGAAUAACCGAGCUUAu |||| | :|||||| auaAACUAAAGACUUCGAAUa 2 19 579 599 [dm3:3L:174487-174507:+] 0.4740 134 6 -11.17 -0.2362 MIMAT0000406 dme-miR-314 38021 p130CAS ggcUUGAAUAACCGAGCUUAu |||| | :|||||| auaAACUAAAGACUUCGAAUa 2 19 579 599 [dm3:3L:174487-174507:+] 0.4740 134 6 -11.17 -0.1563 MIMAT0000406 dme-miR-314 38021 p130CAS ggcUUGAAUAACCGAGCUUAu |||| | :|||||| auaAACUAAAGACUUCGAAUa 2 19 579 599 [dm3:3L:174487-174507:+] 0.4740 134 6 -11.17 -0.3569 MIMAT0000412 dme-miR-iab-4-5p 38021 p130CAS aguccUAUGUAAGUCAUAUGca ||| :||: |||||| ucaacAUA-GUUUUGUAUACuu 3 18 345 365 [dm3:3L:174253-174273:+] 0.5189 135 0 -7.36 -0.1175 MIMAT0000412 dme-miR-iab-4-5p 38021 p130CAS aguccUAUGUAAGUCAUAUGca ||| :||: |||||| ucaacAUA-GUUUUGUAUACuu 3 18 345 365 [dm3:3L:174253-174273:+] 0.5189 135 0 -7.36 -0.1185 MIMAT0000412 dme-miR-iab-4-5p 38021 p130CAS aguccUAUGUAAGUCAUAUGca ||| :||: |||||| ucaacAUA-GUUUUGUAUACuu 3 18 345 365 [dm3:3L:174253-174273:+] 0.5189 135 0 -7.36 -0.1181 MIMAT0000413 dme-miR-iab-4-3p 38021 p130CAS caaugcauaugacuucCAUAUGGc ||||||: auuucaacauaguuuuGUAUACUu 2 9 342 365 [dm3:3L:174250-174273:+] 0.5189 124 0 -10.77 -0.1164 MIMAT0000413 dme-miR-iab-4-3p 38021 p130CAS caaugcauaugacuucCAUAUGGc ||||||: auuucaacauaguuuuGUAUACUu 2 9 342 365 [dm3:3L:174250-174273:+] 0.5189 124 0 -10.77 -0.1174 MIMAT0000413 dme-miR-iab-4-3p 38021 p130CAS caaugcauaugacuucCAUAUGGc ||||||: auuucaacauaguuuuGUAUACUu 2 9 342 365 [dm3:3L:174250-174273:+] 0.5189 124 0 -10.77 -0.1169 MIMAT0005467 dme-miR-190 38021 p130CAS guugguucUUAUAGUUUGUAUAGa :| ||| :||||||| guguaucuGACAUC-GACAUAUCc 2 17 94 116 [dm3:3L:174002-174024:+] 0.4709 150 7 -11.25 -0.1262 MIMAT0005467 dme-miR-190 38021 p130CAS guugguucUUAUAGUUUGUAUAGa :| ||| :||||||| guguaucuGACAUC-GACAUAUCc 2 17 94 116 [dm3:3L:174002-174024:+] 0.4709 150 7 -11.25 -0.1272 MIMAT0005467 dme-miR-190 38021 p130CAS guugguucUUAUAGUUUGUAUAGa :| ||| :||||||| guguaucuGACAUC-GACAUAUCc 2 17 94 116 [dm3:3L:174002-174024:+] 0.4709 150 7 -11.25 -0.1268 MIMAT0005472 dme-miR-375 38021 p130CAS auugaAUUCGGUUUGCUUGUUu || |: | |:|||||| auuagUAUGUAAUAUGAACAAu 2 18 559 580 [dm3:3L:174467-174488:+] 0.4525 141 6 -8.42 -0.1334 MIMAT0005472 dme-miR-375 38021 p130CAS auugaAUUCGGUUUGCUUGUUu || |: | |:|||||| auuagUAUGUAAUAUGAACAAu 2 18 559 580 [dm3:3L:174467-174488:+] 0.4525 141 6 -8.42 -0.1376 MIMAT0005472 dme-miR-375 38021 p130CAS auugaAUUCGGUUUGCUUGUUu || |: | |:|||||| auuagUAUGUAAUAUGAACAAu 2 18 559 580 [dm3:3L:174467-174488:+] 0.4525 141 6 -8.42 -0.1352 MIMAT0005520 dme-miR-1000 38021 p130CAS ugacgACACUGU-CCUGUUAUa ||| |:| | |||||| uaguaUGUAAUAUGAACAAUAa 2 17 561 582 [dm3:3L:174469-174490:+] 0.4740 127 6 -7.41 -0.1348 MIMAT0005520 dme-miR-1000 38021 p130CAS ugacgacacuguccUGUUAUa |||||| cuucgaauaaaauaACAAUAa 2 8 591 611 [dm3:3L:174499-174519:+] 0.4954 120 6 -5.67 -0.2074 MIMAT0005520 dme-miR-1000 38021 p130CAS ugacgACACUGU-CCUGUUAUa ||| |:| | |||||| uaguaUGUAAUAUGAACAAUAa 2 17 561 582 [dm3:3L:174469-174490:+] 0.4740 127 6 -7.41 -0.1269 MIMAT0005520 dme-miR-1000 38021 p130CAS ugacgACACUGU-CCUGUUAUa ||| |:| | |||||| uaguaUGUAAUAUGAACAAUAa 2 17 561 582 [dm3:3L:174469-174490:+] 0.4740 127 6 -7.41 -0.1304

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score p130CAS RAID00193514 dme-miR-314-3p miRNA MIMAT0000406 p130CAS mRNA 38021 Prediction 0.2202 p130CAS RAID00244716 dme-miR-iab-4-3p miRNA MIMAT0000413 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID00246773 dme-miR-7-5p miRNA MIMAT0000112 p130CAS mRNA 38021 Prediction 0.2381 p130CAS RAID00423066 dme-miR-972-3p miRNA MIMAT0005488 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID00529948 dme-miR-34-5p miRNA MIMAT0000350 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID00889254 dme-miR-6-3p miRNA MIMAT0000111 p130CAS mRNA 38021 Prediction 0.2202 p130CAS RAID01127110 dme-miR-1000-5p miRNA MIMAT0005520 p130CAS mRNA 38021 Prediction 0.2202 p130CAS RAID01197073 dme-miR-190-5p miRNA MIMAT0005467 p130CAS mRNA 38021 Prediction 0.2202 p130CAS RAID01320053 dme-miR-284-3p miRNA MIMAT0000348 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID01464736 dme-miR-308-3p miRNA MIMAT0000399 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID01575743 dme-miR-1001-5p miRNA MIMAT0005521 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID01713390 dme-miR-962-5p miRNA MIMAT0005476 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID01749453 dme-miR-8-3p miRNA MIMAT0000113 p130CAS mRNA 38021 Prediction 0.2455 p130CAS RAID01813161 dme-miR-2a-3p miRNA MIMAT0000106 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID01814791 dme-miR-14-3p miRNA MIMAT0000120 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID02281598 dme-miR-2b-3p miRNA MIMAT0000107 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID02485772 dme-miR-375-3p miRNA MIMAT0005472 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID02533648 dme-miR-2c-3p miRNA MIMAT0000411 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID02554809 dme-mir-2a-1 miRNA MI0000117 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID02867538 dme-miR-137-3p miRNA MIMAT0005507 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID03171387 dme-miR-985-3p miRNA MIMAT0005502 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID03238308 dme-miR-iab-4-5p miRNA MIMAT0000412 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID03531752 dme-miR-13a-3p miRNA MIMAT0000118 p130CAS mRNA 38021 Prediction 0.2202 p130CAS RAID03641508 dme-miR-11-3p miRNA MIMAT0000116 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID03872604 dme-miR-1009-3p miRNA MIMAT0005022 p130CAS mRNA 38021 Prediction 0.1828 p130CAS RAID03897105 dme-miR-283-5p miRNA MIMAT0000347 p130CAS mRNA 38021 Prediction 0.2381 p130CAS RAID03992045 dme-miR-13b-3p miRNA MIMAT0000119 p130CAS mRNA 38021 Prediction 0.1828