DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0011784 dme-miR-2279* 38415 CG14969 uuaAAGUGUGUGU-CUAUA-AAUu | :|||:|:: ||||| ||| ccaUAUACAUAUGUGAUAUAUUAu 2 20 200 223 [dm3:3L:3333222-3333245:-] 0.4677 126 0 -9.79 -0.8816 MIMAT0012196 dme-miR-2489 38415 CG14969 ugACGUUUAUGUUGUAUGU-UAu ||:| | :| |:||||| || auUGUAUA-GCCAUAUACAUAUg 2 21 191 212 [dm3:3L:3333233-3333254:-] 0.4677 122 0 -10.42 -0.9103 MIMAT0012196 dme-miR-2489 38415 CG14969 ugacgUUUAUG-UUGUA-UGUUAu ||| || |:|| ||||| aaacaAAACACUUAUAUAACAAUu 2 18 170 193 [dm3:3L:3333252-3333275:-] 0.4677 120 0 -8.21 -1.0452 MIMAT0012199 dme-miR-2492 38415 CG14969 aaacuuucgagagcUGUUUUGUa |||||||| gagccuaaccaaaaACAAAACAc 2 10 158 180 [dm3:3L:3333265-3333287:-] 0.4677 145 7 -9.46 -1.1185 MIMAT0012202 dme-miR-2494* 38415 CG14969 aaggguuagaccACGUGAAUg |||||||| ggcaaguaaaacUGCACUUAa 2 10 289 309 [dm3:3L:3333136-3333156:-] 0.5541 145 7 -11.61 -1.1620 MIMAT0012202 dme-miR-2494* 38415 CG14969 aaggguuagaccACGUGAAug ||||||| uagcauuauauaUGCACUUua 3 10 263 283 [dm3:3L:3333162-3333182:-] 0.5541 125 0 -9.29 -0.2438 MIMAT0012202 dme-miR-2494* 38415 CG14969 aaggguuagaccacGUGAAUg |||||| aaccaaaaacaaaaCACUUAu 2 8 164 184 [dm3:3L:3333261-3333281:-] 0.4677 120 6 -10.60 -0.1353 MIMAT0012215 dme-miR-2500 38415 CG14969 gacuccagguguguGUUUUAGg ||||||| --------------CAAAAUCa 2 9 1 8 [dm3:3L:3333437-3333444:-] 0.4677 140 7 -5.46 -0.9232 MIMAT0012215 dme-miR-2500 38415 CG14969 gacuccAGGUGUG-UGUUUUAGg || | || | |||||| ggcaaaUCAAGACGAGAAAAUCa 2 17 236 258 [dm3:3L:3333187-3333209:-] 0.5109 123 6 -9.44 -0.2218 MIMAT0000106 dme-miR-2a 38415 CG14969 cgaguaguuucgaccgACACUAu |||||| uauagccauauacauaUGUGAUa 2 8 195 217 [dm3:3L:3333228-3333250:-] 0.4677 120 6 -11.28 -0.1367 MIMAT0000107 dme-miR-2b 38415 CG14969 cgaggaguuucgaccgACACUAu |||||| uauagccauauacauaUGUGAUa 2 8 195 217 [dm3:3L:3333228-3333250:-] 0.4677 120 6 -10.16 -0.1367 MIMAT0000111 dme-miR-6 38415 CG14969 uuuuucuugucggugACACUAu |||||| auagccauauacauaUGUGAUa 2 8 196 217 [dm3:3L:3333228-3333249:-] 0.4677 120 6 -16.36 -0.1381 MIMAT0012531 dme-miR-10-3p 38415 CG14969 uuUGGAGAGAUCUU---GGCUUAAAc :| |:|| ||:| :||||||| aaGCAUUUCAAGGAUUUUCGAAUUUu 2 22 91 116 [dm3:3L:3333329-3333354:-] 0.4677 156 7 -14.21 -1.1366 MIMAT0000116 dme-miR-11 38415 CG14969 cguucuugagucugACACUAc |||||| uagccauauacauaUGUGAUa 2 8 197 217 [dm3:3L:3333228-3333248:-] 0.4677 120 6 -6.91 -0.1381 MIMAT0000118 dme-miR-13a 38415 CG14969 ugaguaguuuuaccgACACUAu |||||| auagccauauacauaUGUGAUa 2 8 196 217 [dm3:3L:3333228-3333249:-] 0.4677 120 6 -9.88 -0.1354 MIMAT0000119 dme-miR-13b 38415 CG14969 ugagcaguuuuaccgACACUAu |||||| auagccauauacauaUGUGAUa 2 8 196 217 [dm3:3L:3333228-3333249:-] 0.4677 120 6 -7.97 -0.1354 MIMAT0000399 dme-miR-308 38415 CG14969 gaguGUCAUAUUAGGACACUAa || |||| : |||||| uagcCA-UAUACAUAUGUGAUa 2 19 197 217 [dm3:3L:3333228-3333248:-] 0.4677 124 6 -11.02 -0.1341 MIMAT0000406 dme-miR-314 38415 CG14969 ggCUUGAAUAACC---GAGCUUAu | |:|| || :|||||| aaGCAUUUCAAGGAUUUUCGAAUu 2 20 91 114 [dm3:3L:3333331-3333354:-] 0.4677 126 6 -8.88 -0.1310 MIMAT0000407 dme-miR-315 38415 CG14969 cgaaagacucGUUGUUAGUUUu ||| ||||||| ----------CAA-AAUCAAAa 2 13 1 11 [dm3:3L:3333434-3333444:-] 0.4677 146 7 -6.96 -0.8399 MIMAT0000411 dme-miR-2c 38415 CG14969 cggguaguuucgaccgACACUAu |||||| uauagccauauacauaUGUGAUa 2 8 195 217 [dm3:3L:3333228-3333250:-] 0.4677 120 6 -13.12 -0.1367 MIMAT0005016 dme-miR-1003 38415 CG14969 gacacuUAUACAUUUACACUcu |||| | |||||| auagccAUAUACAUAUGUGAua 3 17 196 217 [dm3:3L:3333228-3333249:-] 0.4677 136 0 -5.96 -0.1167 MIMAT0005017 dme-miR-1004 38415 CG14969 gacacucccuucacUACACUcu |||||| auagccauauacauAUGUGAua 3 9 196 217 [dm3:3L:3333228-3333249:-] 0.4677 120 0 -4.52 -0.1226 MIMAT0005019 dme-miR-1006 38415 CG14969 gauacuuaUUCUU--UAGCUUAAAu |||:| |||||||| agcauuucAAGGAUUUUCGAAUUUu 2 16 92 116 [dm3:3L:3333329-3333353:-] 0.4677 150 7 -11.99 -1.1302 MIMAT0005027 dme-miR-1014 38415 CG14969 gacguuuacuuuuaCUUAAAa |||||| uuucaaggauuuucGAAUUUu 2 8 96 116 [dm3:3L:3333329-3333349:-] 0.4677 120 6 -6.99 -0.1133

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG14969 RAID00383871 dme-miR-13a-3p miRNA MIMAT0000118 CG14969 mRNA 38415 Prediction 0.2202 CG14969 RAID00482467 dme-miR-315-5p miRNA MIMAT0000407 CG14969 mRNA 38415 Prediction 0.2202 CG14969 RAID00501638 dme-miR-11-3p miRNA MIMAT0000116 CG14969 mRNA 38415 Prediction 0.2202 CG14969 RAID00836948 dme-miR-13b-3p miRNA MIMAT0000119 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID01087677 dme-miR-314-3p miRNA MIMAT0000406 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID01178334 dme-miR-1003-3p miRNA MIMAT0005016 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID01652323 dme-miR-1004-3p miRNA MIMAT0005017 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID01773332 dme-miR-6-3p miRNA MIMAT0000111 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID02009825 dme-miR-10-3p miRNA MIMAT0012531 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID02390010 dme-miR-308-3p miRNA MIMAT0000399 CG14969 mRNA 38415 Prediction 0.2202 CG14969 RAID02517027 dme-miR-1006-3p miRNA MIMAT0005019 CG14969 mRNA 38415 Prediction 0.2202 CG14969 RAID02706379 dme-miR-2a-3p miRNA MIMAT0000106 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID03150042 dme-miR-2b-3p miRNA MIMAT0000107 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID03284323 dme-miR-1014-3p miRNA MIMAT0005027 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID03426287 dme-miR-2c-3p miRNA MIMAT0000411 CG14969 mRNA 38415 Prediction 0.1828 CG14969 RAID03471450 dme-mir-2a-1 miRNA MI0000117 CG14969 mRNA 38415 Prediction 0.1828