DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 38715 CG7376 auaguaaagUAUACGU-UGCAUUUAUGu || | :| |: ||||||: uuauaaacaAUCUUUAUAUAUAAAUAUa 2 19 75 102 [dm3:3L:6171819-6171846:+] 0.3267 133 0 -6.74 -0.1084 MIMAT0012199 dme-miR-2492 38715 CG7376 aaacuuUCGAGAGCU---GUUUUGUa | ||: :|| :|||||| ------AACUUAUGAAUUUAAAACAa 2 18 1 20 [dm3:3L:6171745-6171764:+] 0.5699 128 6 -8.27 -0.4112 MIMAT0012216 dme-miR-2501 38715 CG7376 aaucggguccgugagguUUGAAUg |||||| -----------------AACUUAu 2 8 1 7 [dm3:3L:6171745-6171751:+] 0.5699 120 6 -5.80 -0.1597 MIMAT0012531 dme-miR-10-3p 38715 CG7376 uuuggagagaucuugGCUUAAAc :|||||| ---------aacuuaUGAAUUUa 2 9 1 14 [dm3:3L:6171745-6171758:+] 0.5699 124 6 -5.26 -0.1402 MIMAT0000335 dme-miR-219 38715 CG7376 guucuuaacgcaaaccUGUUAGu |||||| uuuaagcuacuuauaaACAAUCu 2 8 65 87 [dm3:3L:6171809-6171831:+] 0.3267 120 6 -5.16 -0.1407 MIMAT0000350 dme-miR-34 38715 CG7376 guguuggucgauuggugUGACGGu |||||| uuauauauaaauauauaACUGCCa 2 8 88 111 [dm3:3L:6171832-6171855:+] 0.3267 120 6 -12.90 -0.1679 MIMAT0005483 dme-miR-1002 38715 CG7376 agcgggaAACAUAGGUGAUGAAUu || | | :||||||| aaauuuaUUUUUUAAGCUACUUAu 2 18 55 78 [dm3:3L:6171799-6171822:+] 0.3267 149 7 -8.68 -0.8799 MIMAT0005484 dme-miR-968 38715 CG7376 guUGGGAAAUUACCUAUGAUGAAu |:::||||| :|||||| uuAUUUUUUAA-----GCUACUUa 2 23 59 77 [dm3:3L:6171803-6171821:+] 0.3267 132 6 -11.78 -0.2518 MIMAT0005486 dme-miR-970 38715 CG7376 uaucggcgcacacaGAAUACu |||||| ------------aaCUUAUGa 2 8 1 9 [dm3:3L:6171745-6171753:+] 0.5699 120 6 -8.26 -0.1786 MIMAT0005019 dme-miR-1006 38715 CG7376 gauacuuauucuuuaGCUUAAAu :|||||| ---------aacuuaUGAAUUUa 2 9 1 14 [dm3:3L:6171745-6171758:+] 0.5699 124 6 -6.53 -0.1375 MIMAT0005027 dme-miR-1014 38715 CG7376 gacguuuacuuuUACUUAAAa |||||||| -------aacuuAUGAAUUUa 2 10 1 14 [dm3:3L:6171745-6171758:+] 0.5699 145 7 -5.12 -1.1702

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7376 RAID00036845 dme-miR-34-5p miRNA MIMAT0000350 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID00399591 dme-miR-970-3p miRNA MIMAT0005486 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID00447840 dme-miR-10-3p miRNA MIMAT0012531 CG7376 mRNA 38715 Prediction 0.1828 CG7376 RAID01139904 dme-miR-968-5p miRNA MIMAT0005484 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID01421606 dme-miR-219-5p miRNA MIMAT0000335 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID02209942 dme-miR-1002-5p miRNA MIMAT0005483 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID03242657 dme-miR-1014-3p miRNA MIMAT0005027 CG7376 mRNA 38715 Prediction 0.2202 CG7376 RAID03339638 dme-miR-1006-3p miRNA MIMAT0005019 CG7376 mRNA 38715 Prediction 0.2202