DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 38844 CG7546 auaguaaaGUAUACGUUGCAUUUAUgu |||||| || |||||| aaagaaaaCAUAUG-AA--UAAAUAau 3 20 817 840 [dm3:3L:7510383-7510406:+] 0.5650 138 0 -9.26 -0.3725 MIMAT0000343 dme-miR-280 38844 CG7546 auaguaaaguauacguugcaUUUAUGu |||||| aauaaaauaaaaacaaaaagAAAUACc 2 8 775 801 [dm3:3L:7510341-7510367:+] 0.5650 120 6 -5.76 -0.2057 MIMAT0000364 dme-miR-289 38844 CG7546 ucagcguccgaggugaaUUUAUAAAu :||||||| ucacauaaaaauguugaGAAUAUUUa 2 10 738 763 [dm3:3L:7510304-7510329:+] 0.5650 141 7 -9.28 -0.9370 MIMAT0005488 dme-miR-972 38844 CG7546 cggauuuauaagcaUAACAUGu ||||||: uuuuacuuuaauaaAUUGUAUu 2 9 49 70 [dm3:3L:7509615-7509636:+] 0.5767 124 0 -8.66 -0.2056 MIMAT0005488 dme-miR-972 38844 CG7546 cggauuuaUAAGCAUAACAUGu || | | |||||| gccaccuaAUGCUUCUUGUACa 2 15 27 48 [dm3:3L:7509593-7509614:+] 0.5767 122 6 -14.50 -0.1843 MIMAT0005509 dme-miR-991 38844 CG7546 ugaAAGGUUUGAUGUUGAAAUu || :| |:| : |||||| uucUUGUACAUU-UUACUUUAa 2 20 39 59 [dm3:3L:7509605-7509625:+] 0.5767 121 6 -7.97 -0.3761 MIMAT0005018 dme-miR-1005 38844 CG7546 gacGCUUAAUUUCUAAGGUCu | |||| : ||||||| agcCAAAUUCCGAAUUCCAGc 2 19 461 481 [dm3:3L:7510027-7510047:+] 0.5365 154 7 -10.33 -0.2946 MIMAT0011784 dme-miR-2279* 38844 CG7546 uuAAAGUGUGUGUCUAUAAAUu | || || || |||||||| aaUAUC-CA-ACUGAUAUUUAu 2 21 182 201 [dm3:3L:7509748-7509767:+] 0.5767 156 7 -9.67 -0.4706 MIMAT0011784 dme-miR-2279* 38844 CG7546 uuaaagUGUGUGUC-UAUAAAUu |::: || ||||||| auaaaaAUGUUGAGAAUAUUUAu 2 17 742 764 [dm3:3L:7510308-7510330:+] 0.5650 143 7 -3.85 -0.8255 MIMAT0011784 dme-miR-2279* 38844 CG7546 uuAAAGUGUGUGUCUAUAAAUu ||| |:| |: :|||||| acUUUAAUAAAU-UGUAUUUAa 2 21 53 73 [dm3:3L:7509619-7509639:+] 0.5767 138 6 -3.86 -0.4246 MIMAT0011784 dme-miR-2279* 38844 CG7546 uuaaagugugugucuAUAAAUu |||||| gcaaaugcuucaaacUAUUUAg 2 8 154 175 [dm3:3L:7509720-7509741:+] 0.5767 120 6 -4.95 -0.1874 MIMAT0012196 dme-miR-2489 38844 CG7546 ugACGUUUAUGUUGUAUGUUAu |||||| | || ||| ||| ugUGCAAA-A-AAAAUAAAAUa 2 21 764 783 [dm3:3L:7510330-7510349:+] 0.5650 132 0 -8.00 -0.1378 MIMAT0012199 dme-miR-2492 38844 CG7546 aaacuuucgagagcugUUUUGUa |||||| caaaaaaaauaaaauaAAAACAa 2 8 768 790 [dm3:3L:7510334-7510356:+] 0.5650 120 6 -2.74 -0.4562 MIMAT0012199 dme-miR-2492 38844 CG7546 aaacuuucgagagcugUUUUGUa |||||| aagccguaaagaaaagAAAACAu 2 8 805 827 [dm3:3L:7510371-7510393:+] 0.5650 120 6 -7.39 -0.2684 MIMAT0012201 dme-miR-2493 38844 CG7546 ugcggAGCG-UGUU-U--AUGUGUGCc |:|| |||| | ||||||| gaagaUUGCGACAACACCAACACACGg 2 19 115 141 [dm3:3L:7509681-7509707:+] 0.5767 147 7 -21.23 -0.4205 MIMAT0012208 dme-miR-2497* 38844 CG7546 uuguugaUGUAAAACG-UUACGAAug || || || ||||||| ggaguggACCCUUAGCAAAUGCUUca 3 19 140 165 [dm3:3L:7509706-7509731:+] 0.5767 137 0 -10.73 -0.1253 MIMAT0012209 dme-miR-2497 38844 CG7546 gacguuUGUAACAUUUACAACa ||| | |||||||| ugugucACA-UAAAAAUGUUGa 2 17 734 754 [dm3:3L:7510300-7510320:+] 0.5650 150 7 -10.87 -1.1773 MIMAT0012212 dme-miR-2499* 38844 CG7546 cguaacgcGACUGCAGAUGCG-UGc | || | |||||| || aucgaaguCCGAAGCCUACGCUACu 2 17 672 696 [dm3:3L:7510238-7510262:+] 0.5356 120 0 -13.36 -0.4672 MIMAT0012215 dme-miR-2500 38844 CG7546 gaCUCCAG-GUGUGUGUUUUAGg || | | ::| ::||||||| cgGAUGACGUGC-UGCAAAAUCa 2 21 413 434 [dm3:3L:7509979-7510000:+] 0.5365 145 7 -13.76 -0.2535 MIMAT0000334 dme-miR-92a 38844 CG7546 uauccggcccuGUUCACGUUac :| |||||| uugagaauauuUAUGUGCAAaa 3 12 751 772 [dm3:3L:7510317-7510338:+] 0.5650 123 0 -6.46 -0.5862 MIMAT0000338 dme-miR-277 38844 CG7546 acAGCAUGG---UCUAUCACGUAAAu |: |||: | | | ||:|||| caUUUUACUUUAAUAAAUUGUAUUUa 2 22 47 72 [dm3:3L:7509613-7509638:+] 0.5767 132 0 -6.61 -0.1597 MIMAT0000347 dme-miR-283 38844 CG7546 ucUUAAUGGUCGACUAUAAAu ||| ||| ||||||||| auAAUAUCCAACUGAUAUUUa 2 20 180 200 [dm3:3L:7509746-7509766:+] 0.5767 171 7 -16.11 -1.0830 MIMAT0000358 dme-miR-92b 38844 CG7546 cgUCCGGCCCUGAU-----CACGUUaa | |::| || || |||||| aaAUGUUGAGAAUAUUUAUGUGCAAaa 3 21 746 772 [dm3:3L:7510312-7510338:+] 0.5650 123 0 -9.90 -0.5862 MIMAT0000362 dme-miR-263b 38844 CG7546 caCUUAAGAGGGUCACGGUUc |||| :|: : |||| || gaGAAUAUUUAU-GUGCAAAa 2 20 753 772 [dm3:3L:7510319-7510338:+] 0.5650 121 0 -9.09 -0.1233 MIMAT0000402 dme-miR-310 38844 CG7546 uuuccggcccuucACACGUUau ||||||| uugagaauauuuaUGUGCAAaa 3 10 751 772 [dm3:3L:7510317-7510338:+] 0.5650 125 0 -7.76 -0.5862 MIMAT0000403 dme-miR-311 38844 CG7546 aguccggccacuUACACGUUau |||||||| uugagaauauuuAUGUGCAAaa 3 11 751 772 [dm3:3L:7510317-7510338:+] 0.5650 130 0 -8.98 -0.5826 MIMAT0000404 dme-miR-312 38844 CG7546 aguccggcaGAGUUCACGUUau :|:| |||||| uugagaauaUUUAUGUGCAAaa 3 14 751 772 [dm3:3L:7510317-7510338:+] 0.5650 129 0 -8.10 -0.5789 MIMAT0000405 dme-miR-313 38844 CG7546 agccCGACACUU-----UUCACGUUau |:|| ||| | |||||| aaauGUUGAGAAUAUUUAUGUGCAAaa 3 19 746 772 [dm3:3L:7510312-7510338:+] 0.5650 125 0 -10.14 -0.5753 MIMAT0000407 dme-miR-315 38844 CG7546 cgaaaGACUCGUUGUUAGUUUu | |||| |||||||| cgcaaCAGAGC-CCAAUCAAAa 2 18 242 262 [dm3:3L:7509808-7509828:+] 0.5767 155 7 -15.14 -0.4916 MIMAT0000408 dme-miR-316 38844 CG7546 gcGGUCAUUCGCC----UUUUUCUgu ||| |||| | :|||||| uaCCAAGAAGCCGUAAAGAAAAGAaa 3 21 798 823 [dm3:3L:7510364-7510389:+] 0.5650 131 0 -13.38 -0.1575 MIMAT0000408 dme-miR-316 38844 CG7546 gcggUCAUUCGCCUUUUUCUgu | ||| ||||||| auaaAAUAAAAACAAAAAGAaa 3 19 776 797 [dm3:3L:7510342-7510363:+] 0.5650 130 0 -8.44 -0.2253 MIMAT0005467 dme-miR-190 38844 CG7546 guuggUUCUUAUAGUUUGUAUAga ||||| | |||||||| ccguaAAGAAAAGAAAACAUAUga 3 20 808 831 [dm3:3L:7510374-7510397:+] 0.5650 151 0 -11.91 -0.4626 MIMAT0005476 dme-miR-962 38844 CG7546 cuguCGUAGUUAAAG--AGAUGGAAUa || || | | |:|||:||| uaauGCUUCUUGUACAUUUUACUUUAa 2 22 33 59 [dm3:3L:7509599-7509625:+] 0.5767 132 0 -8.41 -0.1092 MIMAT0005479 dme-miR-932 38844 CG7546 gacGUUACGUGAU-GCCUUAACu ||||| :| | :||||||| aaaCAAUG-GCGAUUGGAAUUGg 2 20 312 333 [dm3:3L:7509878-7509899:+] 0.5365 156 7 -20.85 -0.7776 MIMAT0005487 dme-miR-971 38844 CG7546 agugacauucuucaUUGUGGUu ||||||| acgaagauugcgacAACACCAa 2 9 113 134 [dm3:3L:7509679-7509700:+] 0.5767 140 7 -12.94 -0.5790 MIMAT0005501 dme-miR-927 38844 CG7546 ccAUUUCGCAUCCUUAAGAUUu |||| || |||| ||| aaUAAA---UAAUAAUUAUAAa 2 21 831 849 [dm3:3L:7510397-7510415:+] 0.5650 120 0 -0.43 -0.4177 MIMAT0005504 dme-miR-987 38844 CG7546 guaguuAGGUC-UGAUAAAUGAAAu ||: | || |||||||| aaugcuUCUUGUACAUUUUACUUUa 2 19 34 58 [dm3:3L:7509600-7509624:+] 0.5767 153 7 -8.81 -1.2846 MIMAT0005516 dme-miR-252 38844 CG7546 gaggacgccgUGAUCAUGAAUc | | |||:||| uacuuuaauaAAUUGUAUUUAa 2 13 52 73 [dm3:3L:7509618-7509639:+] 0.5767 128 0 -6.80 -0.1281 MIMAT0005519 dme-miR-999 38844 CG7546 ucUGUGUCA-GAAU---GUCAAUUGu | |: || :||| :||||||: auAAAUUGUAUUUAAUUUAGUUAAUg 2 21 59 84 [dm3:3L:7509625-7509650:+] 0.5767 130 0 -7.60 -0.1056 MIMAT0005016 dme-miR-1003 38844 CG7546 gaCAC-UUAUACAUUUAC-ACUCu ||| | || ||||| |||| auGUGUCACAUAAAAAUGUUGAGa 2 21 733 756 [dm3:3L:7510299-7510322:+] 0.5650 123 0 -13.87 -1.2335 MIMAT0005027 dme-miR-1014 38844 CG7546 gacguUUACUUUUACUUAAAa ||| ||| || |||| acuuuAAU-AAAUUGUAUUUa 2 17 53 72 [dm3:3L:7509619-7509638:+] 0.5767 126 0 -1.50 -0.1551

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7546 RAID00254791 dme-miR-310-3p miRNA MIMAT0000402 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID00530694 dme-miR-311-3p miRNA MIMAT0000403 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID00595291 dme-miR-277-3p miRNA MIMAT0000338 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID00762172 dme-miR-190-5p miRNA MIMAT0005467 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID00824658 dme-miR-312-3p miRNA MIMAT0000404 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID01084073 dme-miR-315-5p miRNA MIMAT0000407 CG7546 mRNA 38844 Prediction 0.2202 CG7546 RAID01104736 dme-miR-313-3p miRNA MIMAT0000405 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID01221582 dme-miR-971-3p miRNA MIMAT0005487 CG7546 mRNA 38844 Prediction 0.2202 CG7546 RAID01352405 dme-miR-316-5p miRNA MIMAT0000408 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID01512180 dme-miR-972-3p miRNA MIMAT0005488 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID01618391 dme-miR-987-5p miRNA MIMAT0005504 CG7546 mRNA 38844 Prediction 0.2381 CG7546 RAID01755231 dme-miR-252-5p miRNA MIMAT0005516 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID01766470 dme-miR-932-5p miRNA MIMAT0005479 CG7546 mRNA 38844 Prediction 0.2202 CG7546 RAID02466586 dme-miR-263b-5p miRNA MIMAT0000362 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID02484950 dme-miR-999-3p miRNA MIMAT0005519 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID02798082 dme-miR-283-5p miRNA MIMAT0000347 CG7546 mRNA 38844 Prediction 0.2202 CG7546 RAID02888629 dme-mir-13b-1 miRNA MI0000134 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID02917964 dme-miR-11-3p miRNA MIMAT0000116 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID02995374 dme-mir-2a-1 miRNA MI0000117 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03074879 dme-miR-1003-3p miRNA MIMAT0005016 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03437465 dme-miR-92b-3p miRNA MIMAT0000358 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03630074 dme-miR-962-5p miRNA MIMAT0005476 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03636152 dme-miR-1005-3p miRNA MIMAT0005018 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03726935 dme-miR-92a-3p miRNA MIMAT0000334 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03791707 dme-miR-1014-3p miRNA MIMAT0005027 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03836683 dme-miR-306-5p miRNA MIMAT0000393 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03892892 dme-miR-927-5p miRNA MIMAT0005501 CG7546 mRNA 38844 Prediction 0.1828 CG7546 RAID03909719 dme-miR-991-3p miRNA MIMAT0005509 CG7546 mRNA 38844 Prediction 0.1828