DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 39035 CG5087 ucagcguccgAGGUGAA-UUUAUAAAu | :|:|| |||||||| uugguguaaaUGUAUUUCAAAUAUUUu 2 17 81 107 [dm3:3L:8995310-8995336:+] 0.4627 155 7 -10.54 -0.6639 MIMAT0005481 dme-miR-966 39035 CG5087 ggUGUGUCGGGUGUUGGGUGu ||| | :| :||||||| caACAAAUAUC-UAACCCACg 2 20 334 353 [dm3:3L:8995563-8995582:+] 0.5539 149 7 -18.41 -0.9131 MIMAT0005021 dme-miR-1008 39035 CG5087 acAUUUGUGUUU---U-UCGACACu ||||||:||| | ||||||| agUAAACAUAAACGUAUAGCUGUGa 2 20 171 195 [dm3:3L:8995400-8995424:+] 0.4627 165 7 -24.68 -1.2514 MIMAT0011784 dme-miR-2279* 39035 CG5087 uuaAAGUGUGUGUCUAUAAAUu || | | :| ||||||| ggaUUGAGAAGC--AUAUUUAa 2 20 126 145 [dm3:3L:8995355-8995374:+] 0.4627 144 7 -5.52 -0.5861 MIMAT0011787 dme-miR-2280* 39035 CG5087 agucaaucgaaccuUCAUUUAa ||||||| aagagaaaaugucuAGUAAAUa 2 9 290 311 [dm3:3L:8995519-8995540:+] 0.5539 140 7 -5.31 -1.2016 MIMAT0011787 dme-miR-2280* 39035 CG5087 agUCAAUCGAACCUUCAUUUaa | ||| :| |||||||| acAAUUA-UUAAGAAGUAAAca 3 21 158 178 [dm3:3L:8995387-8995407:+] 0.4627 138 0 -8.18 -0.1483 MIMAT0011791 dme-miR-2283 39035 CG5087 uaacaGCAUAAGUACUAUAAAAg :|||||: ||||||| guaaaUGUAUUUCAAAUAUUUUu 2 19 86 108 [dm3:3L:8995315-8995337:+] 0.4627 158 7 -9.51 -0.5574 MIMAT0012214 dme-miR-2500* 39035 CG5087 ccAUAA-CAUAUACA--CACAAGGAAug |||| |||||| | |||||| cuUAUUAAAAUAUGUUAUUAUUCCUUcu 3 24 31 58 [dm3:3L:8995260-8995287:+] 0.4627 141 0 -10.07 -0.1186 MIMAT0012215 dme-miR-2500 39035 CG5087 gacuccagGUGUG-UGUUU-UAGg ||||| ||||| ||| uggcauggCACACAACAAAUAUCu 2 15 322 345 [dm3:3L:8995551-8995574:+] 0.5539 125 0 -14.11 -0.4973 MIMAT0000106 dme-miR-2a 39035 CG5087 cgaGUAGUUUCG-ACCGACACUAu ||| || |: | |||||||| aaaCAUAAACGUAUAGCUGUGAUa 2 21 174 197 [dm3:3L:8995403-8995426:+] 0.4627 163 7 -16.61 -1.0954 MIMAT0000106 dme-miR-2a 39035 CG5087 cgaGUAGUUUCGACCGAC-ACUAu |||: : |:|||||| |||| aucCAUU-GUGUUGGCUGAUGAUa 2 21 266 288 [dm3:3L:8995495-8995517:+] 0.5539 130 0 -21.54 -0.9816 MIMAT0000107 dme-miR-2b 39035 CG5087 cgaGGAGUUUCG-ACCGACACUAu | | || |: | |||||||| aaaCAUAAACGUAUAGCUGUGAUa 2 21 174 197 [dm3:3L:8995403-8995426:+] 0.4627 155 7 -15.62 -1.0954 MIMAT0000107 dme-miR-2b 39035 CG5087 cgAGGAGUUUCGACCGAC-ACUAu ||| : : |:|||||| |||| aaUCCAUUGUGUUGGCUGAUGAUa 2 22 265 288 [dm3:3L:8995494-8995517:+] 0.5539 133 0 -22.61 -0.9816 MIMAT0000110 dme-miR-5 39035 CG5087 guAUAGUGU--UGC--UAGCAAGGAAa |||:| | |:| ||: |||||| cuUAUUAAAAUAUGUUAUUAUUCCUUc 2 22 31 57 [dm3:3L:8995260-8995286:+] 0.4627 127 6 -8.44 -0.1509 MIMAT0000111 dme-miR-6 39035 CG5087 uuUUUCUUGUCGGUGACACUAu || | |:|| ||||||| uaAACGUAUAG---CUGUGAUa 2 21 179 197 [dm3:3L:8995408-8995426:+] 0.4627 148 7 -15.05 -1.0765 MIMAT0000116 dme-miR-11 39035 CG5087 cguucUUGAGUCU-GACACUAc ||| :| | ||||||| acauaAACGUAUAGCUGUGAUa 2 17 176 197 [dm3:3L:8995405-8995426:+] 0.4627 151 7 -14.68 -1.0954 MIMAT0000118 dme-miR-13a 39035 CG5087 ugaGUAGUU--UUACCGACACUAu ||| || || |||||||| aaaCAUAAACGUAUAGCUGUGAUa 2 20 174 197 [dm3:3L:8995403-8995426:+] 0.4627 158 7 -15.83 -1.0978 MIMAT0000118 dme-miR-13a 39035 CG5087 ugaGUAGUUUUACCGAC-ACUAu |||:: : |||||| |||| aucCAUUGUGUUGGCUGAUGAUa 2 20 266 288 [dm3:3L:8995495-8995517:+] 0.5539 131 0 -17.67 -0.9877 MIMAT0000119 dme-miR-13b 39035 CG5087 ugagcaguuuUACCGACACUAu || |||||||| acauaaacguAUAGCUGUGAUa 2 13 176 197 [dm3:3L:8995405-8995426:+] 0.4627 152 7 -16.71 -1.0978 MIMAT0000119 dme-miR-13b 39035 CG5087 ugaGCAGUUUUACCGAC-ACUAu | |:: : |||||| |||| aucCAUUGUGUUGGCUGAUGAUa 2 20 266 288 [dm3:3L:8995495-8995517:+] 0.5539 123 0 -16.86 -0.9877 MIMAT0000332 dme-miR-274 39035 CG5087 uaaUGGGCAAUCACAGCC--AGUGUUUu |: : || ||| | | ||||||| caaAUAUUUUUGUGGCCGCAUCACAAAc 2 24 98 125 [dm3:3L:8995327-8995354:+] 0.4627 154 7 -11.84 -0.2664 MIMAT0000341 dme-miR-279 39035 CG5087 aaUUACUCACACCUAGAUCAgu || ||| :|||||| uaAAAGAGAAAAUGUCUAGUaa 3 21 287 308 [dm3:3L:8995516-8995537:+] 0.5539 128 0 -10.78 -0.2069 MIMAT0000359 dme-miR-286 39035 CG5087 ucgugcucacaagcCAGAUCAgu ||||||| auaaaagagaaaauGUCUAGUaa 3 10 286 308 [dm3:3L:8995515-8995537:+] 0.5539 125 0 -11.69 -0.2069 MIMAT0000399 dme-miR-308 39035 CG5087 gagUGUCAUAUUAGGACACUAa || |||||: ||||||| uaaAC-GUAUAG--CUGUGAUa 2 20 179 197 [dm3:3L:8995408-8995426:+] 0.4627 154 7 -14.97 -1.0690 MIMAT0000407 dme-miR-315 39035 CG5087 cgaaagacUCGU-U--GUUAGUUuu |||| | :|||||| gauugagaAGCAUAUUUAAUCAAua 3 15 127 151 [dm3:3L:8995356-8995380:+] 0.4627 124 0 -10.03 -0.1248 MIMAT0000408 dme-miR-316 39035 CG5087 gcgguCAUUCGCCU----UUUUCUgu || :|| || |||||| auuguGUUGGCUGAUGAUAAAAGAga 3 18 270 295 [dm3:3L:8995499-8995524:+] 0.5539 124 0 -10.75 -0.1811 MIMAT0000408 dme-miR-316 39035 CG5087 gcGGU-CAUUCGCCUUUUUCUgu ||| | ||| |||||| aaCCACGAAAG----AAAAGAaa 3 21 381 399 [dm3:3L:8995610-8995628:+] 0.5539 122 0 -8.52 -0.1046 MIMAT0000411 dme-miR-2c 39035 CG5087 cggGUAGUUUCG-ACCGACACUAu ||| || |: | |||||||| aaaCAUAAACGUAUAGCUGUGAUa 2 21 174 197 [dm3:3L:8995403-8995426:+] 0.4627 163 7 -15.78 -1.0954 MIMAT0000411 dme-miR-2c 39035 CG5087 cgGGUAGUUUCGACCGAC-ACUAu ||||: : |:|||||| |||| auCCAUU-GUGUUGGCUGAUGAUa 2 22 266 288 [dm3:3L:8995495-8995517:+] 0.5539 135 0 -26.55 -0.9816 MIMAT0005472 dme-miR-375 39035 CG5087 auugaauucggUUUGCUUGUUu :||||||||| uacgaauacugGAACGAACAAu 2 12 246 267 [dm3:3L:8995475-8995496:+] 0.5539 151 7 -11.87 -0.8623 MIMAT0005476 dme-miR-962 39035 CG5087 cugucguaGUUAAAGAGAUGGAAUa | | |||| ||||||| auauucccCUACUUCU-UACCUUAu 2 18 12 35 [dm3:3L:8995241-8995264:+] 0.4106 155 7 -11.40 -0.7154 MIMAT0005513 dme-miR-994 39035 CG5087 uagugcCGAUGAUAAAGGAAuc |:||:|| |||||| aaauauGUUAUUA-UUCCUUcu 3 17 38 58 [dm3:3L:8995267-8995287:+] 0.4627 138 0 -12.70 -0.1098 MIMAT0005515 dme-miR-996 39035 CG5087 ucUGCUCGUACUUUAGAUCAgu | ||| | | :|||||| aaAAGAG-AAAAUGUCUAGUaa 3 21 288 308 [dm3:3L:8995517-8995537:+] 0.5539 130 0 -11.64 -0.2050 MIMAT0005520 dme-miR-1000 39035 CG5087 ugacgacacuguccUGUUAUa |||||| aagaaaaaccagaaACAAUAa 2 8 394 414 [dm3:3L:8995623-8995643:+] 0.5539 120 6 -5.87 -0.1632

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG5087 RAID00004054 dme-miR-2a-3p miRNA MIMAT0000106 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID00100554 dme-mir-13b-2 miRNA MI0000135 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00101642 dme-miR-989-3p miRNA MIMAT0005506 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00124811 dme-miR-966-5p miRNA MIMAT0005481 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00138801 dme-miR-308-3p miRNA MIMAT0000399 CG5087 mRNA 39035 Prediction 0.2381 CG5087 RAID00224537 dme-mir-2a-2 miRNA MI0000118 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00294887 dme-mir-13b-1 miRNA MI0000134 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00295170 dme-miR-2b-3p miRNA MIMAT0000107 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID00331798 dme-miR-11-3p miRNA MIMAT0000116 CG5087 mRNA 39035 Prediction 0.2381 CG5087 RAID00417773 dme-mir-2a-1 miRNA MI0000117 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00558929 dme-miR-279-3p miRNA MIMAT0000341 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00653026 dme-miR-996-3p miRNA MIMAT0005515 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00716870 dme-mir-6-3 miRNA MI0000126 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID00908110 dme-mir-6-2 miRNA MI0000125 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID01056398 dme-miR-962-5p miRNA MIMAT0005476 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID01102823 dme-mir-6-1 miRNA MI0000124 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID01343478 dme-miR-274-5p miRNA MIMAT0000332 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID01394677 dme-miR-1008-3p miRNA MIMAT0005021 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID01768956 dme-miR-5-5p miRNA MIMAT0000110 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID01930095 dme-miR-13a-3p miRNA MIMAT0000118 CG5087 mRNA 39035 Prediction 0.2381 CG5087 RAID02163228 dme-miR-13b-3p miRNA MIMAT0000119 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID02223176 dme-miR-1000-5p miRNA MIMAT0005520 CG5087 mRNA 39035 Prediction 0.2381 CG5087 RAID02567561 dme-miR-315-5p miRNA MIMAT0000407 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID02613117 dme-miR-6-3p miRNA MIMAT0000111 CG5087 mRNA 39035 Prediction 0.2381 CG5087 RAID02848844 dme-miR-316-5p miRNA MIMAT0000408 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID02913726 dme-mir-2b-2 miRNA MI0000120 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID03229904 dme-miR-286-3p miRNA MIMAT0000359 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID03325387 dme-miR-2c-3p miRNA MIMAT0000411 CG5087 mRNA 39035 Prediction 0.2455 CG5087 RAID03434169 dme-miR-219-5p miRNA MIMAT0000335 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID03569341 dme-miR-375-3p miRNA MIMAT0005472 CG5087 mRNA 39035 Prediction 0.2202 CG5087 RAID03571334 dme-mir-2b-1 miRNA MI0000119 CG5087 mRNA 39035 Prediction 0.1828 CG5087 RAID03609110 dme-miR-994-5p miRNA MIMAT0005513 CG5087 mRNA 39035 Prediction 0.1828