DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39043 CG4911 auaguaaagUAUACGUUGCAUUUAUGu | |||:|| | |||||| agcaaagcaAAAUGUAA-GCAAAUACa 2 19 825 850 [dm3:3L:9062766-9062791:-] 0.5972 132 6 -12.34 -0.1538 MIMAT0000388 dme-miR-303 39043 CG4911 uggucaaagGACACUUUGGAUUu :|| |||||||| auuuauaaaUUGCAAAACCUAAu 2 15 110 132 [dm3:3L:9063484-9063506:-] 0.5538 150 7 -10.85 -1.1586 MIMAT0005475 dme-miR-961 39043 CG4911 uagaGUCAAUGACCACUAGUUu || | || |||||||| aaaaCA-UGACACGUGAUCAAc 2 19 71 91 [dm3:3L:9063525-9063545:-] 0.5538 152 7 -10.77 -0.2534 MIMAT0005481 dme-miR-966 39043 CG4911 ggUGUGUCGG---G--UGUUGGGUgu ||::|||: | | |||||| uuACGUAGCUAAACAAAAAACCCAaa 3 20 132 157 [dm3:3L:9063459-9063484:-] 0.5538 125 0 -20.32 -0.2450 MIMAT0005489 dme-miR-973 39043 CG4911 uuuuAGCUUCAAGUUG-GUGGUUGgu || || | ::|: |||||| gcgcUC-AAUUGUGAUAAACCAACaa 3 22 706 730 [dm3:3L:9062886-9062910:-] 0.5972 126 0 -12.00 -0.1153 MIMAT0011786 dme-miR-2280 39043 CG4911 uaUAAAAUAACGGUUCGAUUCu ||| | | |:: ||||||| gaAUUGUCUAGUU-AGCUAAGu 2 21 554 574 [dm3:3L:9063042-9063062:-] 0.5972 154 7 -15.02 -1.0767 MIMAT0011786 dme-miR-2280 39043 CG4911 uauaaAAUAACGGUUCGAUUcu | ||| | |||||| aaaccUAAUUACGUAGCUAAac 3 18 124 145 [dm3:3L:9063471-9063492:-] 0.5538 133 0 -5.59 -0.1168 MIMAT0011789 dme-miR-2281 39043 CG4911 cguuaugacgucuaUGUCUAu |||||| auacaaaacaccacACAGAUa 2 8 846 866 [dm3:3L:9062750-9062770:-] 0.5673 120 6 -10.27 -0.3095 MIMAT0012198 dme-miR-2491 39043 CG4911 ucGUUGACGUUUCCGUUGUCGc :||| || | ||||||| aaUAACAAAAACGACAACAGCa 2 21 521 542 [dm3:3L:9063074-9063095:-] 0.5972 156 7 -12.73 -1.1551 MIMAT0012198 dme-miR-2491 39043 CG4911 ucguUGACGUUUCCGUUGUCGc |:| | | |||||||| ugauAUUACCA--GCAACAGCa 2 19 809 828 [dm3:3L:9062788-9062807:-] 0.5972 147 7 -12.32 -1.0374 MIMAT0012199 dme-miR-2492 39043 CG4911 aaACUUUCGAGAGCUGUUUUGUa || |||| : |||||||| aaUGUAAGCAAAU-ACAAAACAc 2 22 835 856 [dm3:3L:9062760-9062781:-] 0.5673 155 7 -11.44 -1.0559 MIMAT0012199 dme-miR-2492 39043 CG4911 aaacuuucgagAGCUGUUUUGua |:| |||||| uaauuuauaaaUUG-CAAAACcu 3 13 108 129 [dm3:3L:9063487-9063508:-] 0.5538 122 0 -5.33 -0.1231 MIMAT0012202 dme-miR-2494* 39043 CG4911 aagggUUAGACCACGUGAAug |: || | |||||| gcaaaAGACUUGAGCACUUca 3 17 341 361 [dm3:3L:9063255-9063275:-] 0.5972 132 0 -10.69 -0.1139 MIMAT0012206 dme-miR-2496* 39043 CG4911 augcUACCGGA-GAG-UGUG-UGCGUg || |::| ||| | || ||||| ucaaAUUGUUUGCUCAAAACGACGCAa 2 21 629 655 [dm3:3L:9062961-9062987:-] 0.5972 122 0 -14.75 -0.9518 MIMAT0012209 dme-miR-2497 39043 CG4911 gacgUUUGUAACAUUUACAAca ||:::||| ||||||| caaaAAGUGUUGAAAAUGUUug 3 19 584 605 [dm3:3L:9063011-9063032:-] 0.5972 150 0 -11.72 -0.1242 MIMAT0012210 dme-miR-2498* 39043 CG4911 guuuuuAUUCGUAUUGUCGGAAAu ||| : | :||||||| uuuuccUAA-UUUCUUAGCCUUUg 2 19 241 263 [dm3:3L:9063353-9063375:-] 0.5972 144 7 -11.08 -1.1213 MIMAT0012215 dme-miR-2500 39043 CG4911 gacuccAGGUGUGUGUUUUAGg |::::| ||||||| uuagccUUUGUAAUCAAAAUCg 2 17 254 275 [dm3:3L:9063341-9063362:-] 0.5972 148 7 -7.59 -0.9205 MIMAT0000106 dme-miR-2a 39043 CG4911 cgAGUAGUU-UCGACCGACACUAu | | ||| | | ||||||| uaUAAGCAACAAC-AACUGUGAUu 2 22 428 450 [dm3:3L:9063166-9063188:-] 0.5972 142 7 -13.20 -0.8406 MIMAT0000107 dme-miR-2b 39043 CG4911 cgaggaguuucgaccGACACUAu ||||||| uauaagcaacaacaaCUGUGAUu 2 9 428 450 [dm3:3L:9063166-9063188:-] 0.5972 140 7 -12.21 -0.8406 MIMAT0000111 dme-miR-6 39043 CG4911 uuUUUCUUGUCGGUGACACUAu ||: |||| | |||||||| auAAGCAACAACAACUGUGAUu 2 21 429 450 [dm3:3L:9063166-9063187:-] 0.5972 172 7 -16.84 -0.8300 MIMAT0000114 dme-miR-9a 39043 CG4911 aguAUGUCGAUCUAUUGGUUUcu ||| | ||||||||| aacUACUCAAAUAUAACCAAAaa 3 21 16 38 [dm3:3L:9063578-9063600:-] 0.5538 140 0 -9.99 -0.1276 MIMAT0000116 dme-miR-11 39043 CG4911 cgUUC-UUG-AGUCUGACACUAc ||| ||| || |||||||| auAAGCAACAACA-ACUGUGAUu 2 20 429 450 [dm3:3L:9063166-9063187:-] 0.5972 155 7 -15.00 -0.8371 MIMAT0000118 dme-miR-13a 39043 CG4911 ugAGUAGUU-UUACCGACACUAu | | ||| || ||||||| uaUAAGCAACAACAACUGUGAUu 2 21 428 450 [dm3:3L:9063166-9063188:-] 0.5972 151 7 -11.51 -0.8336 MIMAT0000119 dme-miR-13b 39043 CG4911 ugagcaGUU-UUACCGACACUAu ||| || ||||||| uauaagCAACAACAACUGUGAUu 2 17 428 450 [dm3:3L:9063166-9063188:-] 0.5972 147 7 -10.44 -0.8336 MIMAT0000332 dme-miR-274 39043 CG4911 uaaugggcaaucacagccAGUGUUUu ||||||| gcaaaagacuugagcacuUCACAAAu 2 9 341 366 [dm3:3L:9063250-9063275:-] 0.5972 140 7 -10.43 -0.9797 MIMAT0000346 dme-miR-282 39043 CG4911 ugUCUGUUUCGGAUCAUCUCCGAUCUAa | ::|| | | ||| ||||||| aaAUGUAACAACAACGAGA-GCUAGAUc 2 27 745 771 [dm3:3L:9062845-9062871:-] 0.5972 152 7 -14.82 -0.3897 MIMAT0000346 dme-miR-282 39043 CG4911 ugUCUGUUUCGGAUCAUCU---CCGAUCUaa |||: :||::|: |: | |||||| cgAGAU-GAGUUUGUUGAAACCUGCUAGAga 3 27 388 417 [dm3:3L:9063199-9063228:-] 0.5972 131 0 -12.73 -0.1436 MIMAT0000361 dme-miR-87 39043 CG4911 gugUGGACUUUA--AAACGAGUu |: | |||| |||||||| ccaAUGUCAAAUUGUUUGCUCAa 2 19 623 645 [dm3:3L:9062971-9062993:-] 0.5972 157 7 -13.44 -1.0427 MIMAT0000391 dme-miR-305 39043 CG4911 gucUCGUGGACUACU--UCAUGUUa ||| |:|| | | ||||||| auuAGCCCUUGUUUAUUAGUACAAa 2 21 278 302 [dm3:3L:9063314-9063338:-] 0.5972 159 7 -14.20 -1.0976 MIMAT0000392 dme-miR-9c 39043 CG4911 agaUGUCGAUCUUA---UGGUUUcu || || ||| |||||| gaaACUACUCAAAUAUAACCAAAaa 3 20 14 38 [dm3:3L:9063578-9063602:-] 0.5538 126 0 -9.55 -0.1276 MIMAT0000395 dme-miR-9b 39043 CG4911 guAUGUCGAUUUUAGUGGUUUcu ||| | || || |||||| acUAC-UCAAAUAUAACCAAAaa 3 22 17 38 [dm3:3L:9063578-9063599:-] 0.5538 139 0 -9.34 -0.1263 MIMAT0000399 dme-miR-308 39043 CG4911 gagUGUCAUAUUAGGACACUAa ||| | || ||||||| gcaACA--ACAA--CUGUGAUu 2 20 433 450 [dm3:3L:9063166-9063183:-] 0.5972 141 7 -11.00 -0.8167 MIMAT0000407 dme-miR-315 39043 CG4911 cgAAAGACUCG---UUGUUAGUUUu ||||| ||| ::||||||| aaUUUCUUAGCCUUUGUAAUCAAAa 2 21 248 272 [dm3:3L:9063344-9063368:-] 0.5972 159 7 -15.01 -1.0908 MIMAT0000408 dme-miR-316 39043 CG4911 gcGGUCAUUCG--CCUUUUUCUGu ::|| :||| | ||||||| ugUUAG-GAGCAAAGCAAAAGACu 2 21 328 350 [dm3:3L:9063266-9063288:-] 0.5972 145 7 -15.41 -0.5644 MIMAT0000408 dme-miR-316 39043 CG4911 gcgguCAUUCGCCUUUUUCUgu |||||| ||||||| auaauGUAAGC--AAAAAGAaa 3 18 161 180 [dm3:3L:9063436-9063455:-] 0.5538 142 0 -11.36 -0.1733 MIMAT0000409 dme-miR-317 39043 CG4911 ugaccuaUGGUGGUCGACAC-AAGu | || || ||||| ||| uauaagcAACAACAACUGUGAUUCa 2 18 428 452 [dm3:3L:9063164-9063188:-] 0.5972 125 0 -16.37 -0.9273 MIMAT0000411 dme-miR-2c 39043 CG4911 cggguaguuucgaccGACACUAu ||||||| uauaagcaacaacaaCUGUGAUu 2 9 428 450 [dm3:3L:9063166-9063188:-] 0.5972 140 7 -12.37 -0.8406 MIMAT0005463 dme-miR-iab-4as-5p 39043 CG4911 gccauauggaagucauAUGCAUu |||||| aauugcaaaaccuaauUACGUAg 2 8 117 139 [dm3:3L:9063477-9063499:-] 0.5538 120 6 -11.84 -0.1389 MIMAT0005479 dme-miR-932 39043 CG4911 gaCGUUACGUGAUGC-CUUAACu |||| :::|| | |||||| caGCAAGUUGUUAAGCGAAUUGu 2 21 538 560 [dm3:3L:9063056-9063078:-] 0.5972 128 6 -12.13 -0.6898 MIMAT0005484 dme-miR-968 39043 CG4911 guugggaaaUUA-CCUAUGAUGAau ||| ||| |||||| -guggucgaAAUAGGAAACUACUca 3 16 1 24 [dm3:3L:9063592-9063615:-] 0.5538 138 0 -11.97 -0.1375 MIMAT0005487 dme-miR-971 39043 CG4911 agUGACAUUC-UUCA----UUGUGGUu | |||||| || | ||||||| aaAAUGUAAGCAAAUACAAAACACCAc 2 21 833 859 [dm3:3L:9062757-9062783:-] 0.5673 154 7 -12.54 -0.6418 MIMAT0005497 dme-miR-981 39043 CG4911 acguccaaagcaGCUGUUGCUu | ||||||| aagcaaauguaaCAACAACGAg 2 11 741 762 [dm3:3L:9062854-9062875:-] 0.5972 142 7 -14.29 -0.7158 MIMAT0005507 dme-miR-137 39043 CG4911 gaugcacaUAAGA-GUUCGUUau |||:| :|||||| gaaacaucAUUUUAUAAGCAAca 3 15 416 438 [dm3:3L:9063178-9063200:-] 0.5972 133 0 -7.11 -0.1288 MIMAT0005507 dme-miR-137 39043 CG4911 gaUGCACAUAAGAGUUCGUUau | | || | | |||||| aaAAGAAUAAUGU-AAGCAAaa 3 21 155 175 [dm3:3L:9063441-9063461:-] 0.5538 126 0 -5.93 -0.1769 MIMAT0005023 dme-miR-1010 39043 CG4911 gaCGUUUACCUUGCUAUC-CACUUu ||||||| || | || ||||| auGCAAAUGCAA-GCCAGUGUGAAa 2 23 467 490 [dm3:3L:9063126-9063149:-] 0.5972 136 0 -17.87 -0.4426

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG4911 RAID00002410 dme-mir-6-3 miRNA MI0000126 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00102068 dme-miR-961-5p miRNA MIMAT0005475 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00193891 dme-mir-6-2 miRNA MI0000125 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00393065 dme-mir-6-1 miRNA MI0000124 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00416247 dme-miR-33-5p miRNA MIMAT0000342 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00560168 dme-miR-306-5p miRNA MIMAT0000393 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID00663632 dme-miR-274-5p miRNA MIMAT0000332 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID00709567 dme-miR-9a-5p miRNA MIMAT0000114 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID01210380 dme-miR-13a-3p miRNA MIMAT0000118 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID01487241 dme-miR-137-3p miRNA MIMAT0005507 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID01510435 dme-miR-13b-3p miRNA MIMAT0000119 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID01655963 dme-mir-281-1 miRNA MI0000366 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID01859888 dme-miR-305-5p miRNA MIMAT0000391 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID01895653 dme-miR-315-5p miRNA MIMAT0000407 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID01923803 dme-miR-6-3p miRNA MIMAT0000111 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID02013983 dme-miR-971-3p miRNA MIMAT0005487 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID02160490 dme-miR-316-5p miRNA MIMAT0000408 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID02195609 dme-mir-2b-2 miRNA MI0000120 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID02366721 dme-miR-9c-5p miRNA MIMAT0000392 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID02460664 dme-miR-968-5p miRNA MIMAT0005484 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID02469984 dme-miR-981-3p miRNA MIMAT0005497 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID02524652 dme-miR-286-3p miRNA MIMAT0000359 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID02573569 dme-miR-932-5p miRNA MIMAT0005479 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID02613676 dme-miR-2c-3p miRNA MIMAT0000411 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID02916192 dme-mir-2b-1 miRNA MI0000119 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03002274 dme-miR-317-3p miRNA MIMAT0000409 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03024640 dme-miR-210-3p miRNA MIMAT0000355 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03172065 dme-miR-iab-8-5p miRNA MIMAT0005463 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03333670 dme-miR-282-5p miRNA MIMAT0000346 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03384292 dme-miR-303-5p miRNA MIMAT0000388 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03392043 dme-miR-2a-3p miRNA MIMAT0000106 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID03470623 dme-mir-13b-2 miRNA MI0000135 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03491990 dme-miR-1010-3p miRNA MIMAT0005023 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03517434 dme-miR-308-3p miRNA MIMAT0000399 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID03608257 dme-miR-283-5p miRNA MIMAT0000347 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID03612897 dme-mir-2a-2 miRNA MI0000118 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03678483 dme-mir-13b-1 miRNA MI0000134 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03683838 dme-miR-2b-3p miRNA MIMAT0000107 CG4911 mRNA 39043 Prediction 0.2202 CG4911 RAID03742386 dme-miR-11-3p miRNA MIMAT0000116 CG4911 mRNA 39043 Prediction 0.2381 CG4911 RAID03827132 dme-mir-2a-1 miRNA MI0000117 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03915326 dme-miR-9b-5p miRNA MIMAT0000395 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID03926645 dme-miR-87-3p miRNA MIMAT0000361 CG4911 mRNA 39043 Prediction 0.2455 CG4911 RAID03940490 dme-miR-279-3p miRNA MIMAT0000341 CG4911 mRNA 39043 Prediction 0.1828 CG4911 RAID04065399 dme-miR-996-3p miRNA MIMAT0005515 CG4911 mRNA 39043 Prediction 0.1828