DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39104 pall auaGUAAAGU-AU-ACGUUGCAUUUAUGu :||| :| || | | |: ||||||| aaaUAUUGUAUUACUACUAUAUAAAUACa 2 25 133 161 [dm3:3L:9479562-9479590:-] 0.6876 158 7 -8.24 -1.3506 MIMAT0000343 dme-miR-280 39104 pall auAGUAAAGUAUACGUUGCAUUUAUGu |::|| || ||: || ||||||: uaUUGUUGCACUUGUUACUUAAAUAUu 2 26 113 139 [dm3:3L:9479584-9479610:-] 0.6876 157 0 -9.26 -0.2279 MIMAT0000364 dme-miR-289 39104 pall ucAGCGUCCGAGGUGAAUUUAUAAau |:||| : ::||||||||||| ugUUGCACUUGUUACUUAAAUAUUgu 3 25 116 141 [dm3:3L:9479582-9479607:-] 0.6876 160 0 -19.92 -0.4293 MIMAT0005488 dme-miR-972 39104 pall cgGAUUUAUAAG--CAUAACAUGu || : || |: |||||||: caCUUGUUACUUAAAUAUUGUAUu 2 21 121 144 [dm3:3L:9479579-9479602:-] 0.6876 131 0 -13.56 -0.2797 MIMAT0005499 dme-miR-983 39104 pall agUAAUCAAGCU-UUGCAUAAUa :||| || | | :|||||| uuGUUACUUAAAUAUUGUAUUAc 2 21 124 146 [dm3:3L:9479577-9479599:-] 0.6876 139 6 -4.86 -0.5196 MIMAT0005026 dme-miR-1013 39104 pall gcucaagccgUA-UGAAAAUa || :|||||| gcaauacuaaAUAGCUUUUAa 2 11 11 31 [dm3:3L:9479692-9479712:-] 0.4990 125 6 -4.40 -0.2367 MIMAT0012196 dme-miR-2489 39104 pall ugacguuUAUGUUGUAUGUUAu |||:|| ||||| | uacuacuAUAUAA-AUACAUUg 2 16 144 164 [dm3:3L:9479559-9479579:-] 0.6876 125 0 -7.92 -0.2505 MIMAT0012202 dme-miR-2494* 39104 pall aaggguuaGACCACGUGAAUg :|| |||||||: aagauuuaUUGUUGCACUUGu 2 14 107 127 [dm3:3L:9479596-9479616:-] 0.6876 137 0 -12.96 -0.3089 MIMAT0012209 dme-miR-2497 39104 pall gaCGUUUGUAA--CAUUUACAACa ||| ::|| ||||| ||| uuGCACUUGUUACUUAAAUAUUGu 2 21 118 141 [dm3:3L:9479582-9479605:-] 0.6876 123 0 -8.69 -0.1483 MIMAT0012214 dme-miR-2500* 39104 pall ccAUAACAUAUACACACAAGGAAUg |||||| |: |||| |||| uuUAUUGU-UGCACUUGUUACUUAa 2 24 111 134 [dm3:3L:9479589-9479612:-] 0.6876 133 0 -9.31 -0.2162 MIMAT0000109 dme-miR-4 39104 pall aguuaccaacagAUCGAAAua ||||||| agcaauacuaaaUAGCUUUua 3 10 10 30 [dm3:3L:9479693-9479713:-] 0.4990 125 0 -9.58 -0.2666 MIMAT0000110 dme-miR-5 39104 pall guAUAGUGUUGCUAGCAAGGAAa |||::: :| |:||| ||| uuUAUUGUUGCACUUGUUACUUa 2 22 111 133 [dm3:3L:9479590-9479612:-] 0.6876 129 0 -5.76 -0.2848 MIMAT0000341 dme-miR-279 39104 pall aaUUA-CUCACACCUAGAUCAgu ||| | || ||||||| uaAAUACAUUGAACAUCUAGUg- 3 21 154 175 [dm3:3L:9479548-9479569:-] 0.6876 131 0 -6.42 -0.2468 MIMAT0000352 dme-miR-79 39104 pall uaCGAAACCAUUAGAUCGAAAu || | ||| ||||||| uaGCAAUACUAA-AUAGCUUUu 2 21 9 29 [dm3:3L:9479694-9479714:-] 0.4990 146 7 -7.52 -0.7039 MIMAT0000359 dme-miR-286 39104 pall ucGUGCUCACAAGCCAGAUCAgu :|| | || | |||||| aaUAC-AUUGAAC-AUCUAGUg- 3 22 156 175 [dm3:3L:9479548-9479567:-] 0.6876 121 0 -6.91 -0.2490 MIMAT0005477 dme-miR-963 39104 pall cuuUGUUGGACUAUAAAUGGAACa || ||: ||| ||| ||| auuACUACUAUAUAAAUACAUUGa 2 22 142 165 [dm3:3L:9479558-9479581:-] 0.6876 129 0 -4.41 -0.2773 MIMAT0005483 dme-miR-1002 39104 pall agcgggaAACAUAGGUGAUGAAUu ||| | ::::|||||| uuuauugUUGCACUUGUUACUUAa 2 18 111 134 [dm3:3L:9479589-9479612:-] 0.6876 141 6 -10.71 -0.5390 MIMAT0005483 dme-miR-1002 39104 pall agcgggaAACAUAGGUGAUGA-AUu |||||| :|||||| || uuaaauaUUGUAU-UACUACUAUAu 2 18 131 154 [dm3:3L:9479569-9479592:-] 0.6876 131 0 -12.26 -1.2730 MIMAT0005484 dme-miR-968 39104 pall guugggaaAUUACCU-AUGAUGAau || || | ||||||| uacuuaaaUAUUGUAUUACUACUau 3 17 128 152 [dm3:3L:9479571-9479595:-] 0.6876 135 0 -8.13 -0.5257 MIMAT0005504 dme-miR-987 39104 pall guAGUUA-GGUCUGAUAAAUGAAau |:| | ::: ||| |||||| auUUAUUGUUGCACUUGUUACUUaa 3 23 110 134 [dm3:3L:9479589-9479613:-] 0.6876 133 0 -5.51 -0.5159 MIMAT0005507 dme-miR-137 39104 pall gaugcacauaagaguUCGUUAu |||||| ------ccaaggauuAGCAAUa 2 8 1 16 [dm3:3L:9479707-9479722:-] 0.5454 120 6 -6.80 -0.2167 MIMAT0005515 dme-miR-996 39104 pall ucugcucGU-ACUU-UAGAUCAgu || |||| ||||||| auaaauaCAUUGAACAUCUAGUg- 3 16 153 175 [dm3:3L:9479548-9479570:-] 0.6876 137 0 -11.71 -0.2468 MIMAT0005516 dme-miR-252 39104 pall gagGACGCCGUGAUC-AUGAAUc :||: ||||| | |||||| uuaUUGUUGCACUUGUUACUUAa 2 20 112 134 [dm3:3L:9479589-9479611:-] 0.6876 135 6 -15.10 -1.3257

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score pall RAID00082512 dme-miR-279-3p miRNA MIMAT0000341 pall mRNA 39104 Prediction 0.1828 pall RAID00162458 dme-miR-4-3p miRNA MIMAT0000109 pall mRNA 39104 Prediction 0.1828 pall RAID00654116 dme-miR-286-3p miRNA MIMAT0000359 pall mRNA 39104 Prediction 0.1828 pall RAID01261768 dme-miR-79-3p miRNA MIMAT0000352 pall mRNA 39104 Prediction 0.2202 pall RAID01448028 dme-miR-1002-5p miRNA MIMAT0005483 pall mRNA 39104 Prediction 0.2381 pall RAID01785138 dme-miR-987-5p miRNA MIMAT0005504 pall mRNA 39104 Prediction 0.1828 pall RAID02086604 dme-miR-5-5p miRNA MIMAT0000110 pall mRNA 39104 Prediction 0.1828 pall RAID02462283 dme-miR-1013-3p miRNA MIMAT0005026 pall mRNA 39104 Prediction 0.1828 pall RAID02899399 dme-miR-963-5p miRNA MIMAT0005477 pall mRNA 39104 Prediction 0.1828 pall RAID03350625 dme-miR-996-3p miRNA MIMAT0005515 pall mRNA 39104 Prediction 0.1828 pall RAID03634693 dme-miR-252-5p miRNA MIMAT0005516 pall mRNA 39104 Prediction 0.2381 pall RAID03841964 dme-miR-137-3p miRNA MIMAT0005507 pall mRNA 39104 Prediction 0.2202 pall RAID03937473 dme-miR-968-5p miRNA MIMAT0005484 pall mRNA 39104 Prediction 0.1828