DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39319 CG11658 auAGUAAAGUAUAC-G--UUGC-AUUUAUGu ||||||: |: | | |||| |||||| guUCAUUUUUUGAGACAAAACGAGAAAUACa 2 26 564 594 [dm3:3L:11693203-11693233:-] 0.5944 138 6 -16.12 -0.1469 MIMAT0000364 dme-miR-289 39319 CG11658 ucagcguccgaggugaaUUUAUAAAu :||||||| acaaaacgagaauaagcGAAUAUUUu 2 10 462 487 [dm3:3L:11693310-11693335:-] 0.5679 141 7 -7.98 -0.5940 MIMAT0005521 dme-miR-1001 39319 CG11658 acuaggaacccUC-AAAUGGGu || ||||||| gcguguguuaaAGUUUUACCCu 2 11 78 99 [dm3:3L:11693698-11693719:-] 0.5150 141 7 -9.58 -0.7132 MIMAT0005022 dme-miR-1009 39319 CG11658 gaCUUUACAUUGUUAAAAACUCu || ||| || |||||||| ccGAUUUGU-UCAUUUUUUGAGa 2 22 557 578 [dm3:3L:11693219-11693240:-] 0.5944 159 7 -14.73 -1.2176 MIMAT0005026 dme-miR-1013 39319 CG11658 gcucaagccGUAUGAAAAUa :| ||||||| aacgagaaaUACACUUUUAu 2 12 582 601 [dm3:3L:11693196-11693215:-] 0.5944 143 7 -12.14 -0.5432 MIMAT0011784 dme-miR-2279* 39319 CG11658 uuaaaGUGUGUGUCUAUAAAUu ||:|||:| ||||||| guagaCAUACAUACAUAUUUAu 2 18 344 365 [dm3:3L:11693432-11693453:-] 0.4789 169 7 -14.95 -0.4296 MIMAT0011791 dme-miR-2283 39319 CG11658 uaacagcauaaguacUAUAAAAg ||||||| aacgagaauaagcgaAUAUUUUu 2 9 466 488 [dm3:3L:11693309-11693331:-] 0.5679 140 7 -5.37 -0.7744 MIMAT0011791 dme-miR-2283 39319 CG11658 uaacagcauaaguacuAUAAAAg |||||| acguguaucgagaaacUAUUUUu 2 8 510 532 [dm3:3L:11693265-11693287:-] 0.5645 120 6 -11.26 -0.1101 MIMAT0012196 dme-miR-2489 39319 CG11658 ugACGUUUAUGU-UGUAUGU-UAu ||:: | ||| ||||||| || guUGUGUAGACAUACAUACAUAUu 2 21 339 362 [dm3:3L:11693435-11693458:-] 0.4789 131 0 -12.14 -0.7180 MIMAT0012206 dme-miR-2496* 39319 CG11658 augcuaCCGGAGAGUGUGUGCGUg ||: |:| : ||||||| gauuuaGGUAUUUAGGACACGCAa 2 19 427 450 [dm3:3L:11693347-11693370:-] 0.4958 154 7 -16.85 -0.5771 MIMAT0000108 dme-miR-3 39319 CG11658 acucUGUGUGAAA----CGGGUCACu | ::|:||| |||||||| ucgaAAGUAUUUUUACGGCCCAGUGg 2 19 39 64 [dm3:3L:11693733-11693758:-] 0.4807 149 7 -20.27 -0.2626 MIMAT0000401 dme-miR-309 39319 CG11658 auccuguUUGAAAU---GGGUCACg | :|||| ||||||| cgaaaguAUUUUUACGGCCCAGUGg 2 16 40 64 [dm3:3L:11693733-11693757:-] 0.4807 146 7 -15.67 -0.2626 MIMAT0000410 dme-miR-318 39319 CG11658 acUC-UAUUUGUUUCGGGUCACu || || :| :|||||||| aaAGUAUUUUUACGGCCCAGUGg 2 21 42 64 [dm3:3L:11693733-11693755:-] 0.4807 151 7 -19.15 -0.2603 MIMAT0005487 dme-miR-971 39319 CG11658 agugacauucuucauUGUGGUu |||||| aacuauuuuuaauguACACCAg 2 8 523 544 [dm3:3L:11693253-11693274:-] 0.5944 120 6 -10.80 -0.1368

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG11658 RAID00822622 dme-miR-1001-5p miRNA MIMAT0005521 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID00883898 dme-miR-309-3p miRNA MIMAT0000401 CG11658 mRNA 39319 Prediction 0.2202 CG11658 RAID01186759 dme-miR-1013-3p miRNA MIMAT0005026 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID01946436 dme-miR-3-3p miRNA MIMAT0000108 CG11658 mRNA 39319 Prediction 0.2202 CG11658 RAID02120274 dme-miR-318-3p miRNA MIMAT0000410 CG11658 mRNA 39319 Prediction 0.2202 CG11658 RAID03053303 dme-miR-1009-3p miRNA MIMAT0005022 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03139364 dme-miR-973-5p miRNA MIMAT0005489 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03165822 dme-miR-133-3p miRNA MIMAT0000340 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03296285 dme-miR-971-3p miRNA MIMAT0005487 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03426717 dme-miR-957-3p miRNA MIMAT0005470 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03721617 dme-miR-988-3p miRNA MIMAT0005505 CG11658 mRNA 39319 Prediction 0.1828 CG11658 RAID03838179 dme-miR-34-5p miRNA MIMAT0000350 CG11658 mRNA 39319 Prediction 0.2381