DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39394 thoc6 auAGU-AAAGUAUACGU--UGCA-UUUAUGu ||: |||:| | ||: ||| |||||| ccUCGUUUUUACAAGCGUUUCGUGAAAUACg 2 26 19 49 [dm3:3L:12185478-12185508:-] 0.4883 131 6 -17.58 -0.4349 MIMAT0005509 dme-miR-991 39394 thoc6 ugaaagGU-UUGAUG-UUGAAAuu || | |||: |||||| cuccagCAUACCUAUAAACUUUuu 3 17 137 160 [dm3:3L:12185367-12185390:-] 0.6101 130 0 -10.87 -0.1192 MIMAT0005022 dme-miR-1009 39394 thoc6 gacuuuACAUUGUUAAAAACUcu | ||| ||||||| cauaccUAUAAACUUUUUUGAaa 3 18 143 165 [dm3:3L:12185362-12185384:-] 0.6101 133 0 -4.85 -0.2199 MIMAT0005026 dme-miR-1013 39394 thoc6 gcucaagccGUAUGAAAAua :| |||||| gcauaccuaUAAACUUUUuu 3 12 142 161 [dm3:3L:12185366-12185385:-] 0.6101 123 0 -4.46 -0.1186 MIMAT0012194 dme-miR-307-as* 39394 thoc6 ggUAGUGUUGGAGGAACUCACu :|: | : || ||||||| auGUUCCCUUAUCGUUGAGUGc 2 21 109 130 [dm3:3L:12185397-12185418:-] 0.5900 148 7 -12.80 -0.4058 MIMAT0012214 dme-miR-2500* 39394 thoc6 ccaUAACA--UAUACA--CACAA-GGAAUg ||| | | |||| |||| ||||| uacAUUCUCCAAAUGUUAAUGUUCCCUUAu 2 23 91 120 [dm3:3L:12185407-12185436:-] 0.5900 124 0 -11.72 -0.7336 MIMAT0012216 dme-miR-2501 39394 thoc6 aaucGGGUC-CGU-GAGGUUUGAAug :|||| :| || :|||||| auccUCCAGCAUACCUAUAAACUUuu 3 21 134 159 [dm3:3L:12185368-12185393:-] 0.6101 134 0 -14.74 -0.1224 MIMAT0000109 dme-miR-4 39394 thoc6 aguuaccaacagaUCGAAAUa ||||||| auaagaaagcuagAGCUUUAa 2 9 255 275 [dm3:3L:12185252-12185272:-] 0.3894 140 7 -6.67 -0.5540 MIMAT0000339 dme-miR-278 39394 thoc6 uuUGCCUGCUUUCA-GGGUGGcu ||| | | | || |||||| aaACGCAAGUAUGUACCCACCaa 3 21 283 305 [dm3:3L:12185222-12185244:-] 0.5173 139 0 -17.50 -0.1360 MIMAT0000346 dme-miR-282 39394 thoc6 ugUCUGUUUCGG-----AUCA-UC-UCCGAUCUaa :||||: || || | || | |||||| guGGACAGUACCUUUAAUAAUAAGAAAGCUAGAgc 3 27 236 270 [dm3:3L:12185257-12185291:-] 0.4997 127 0 -17.33 -0.1151 MIMAT0000407 dme-miR-315 39394 thoc6 cgaaaGAC-UCGUUGUUAGUUUu ||| | ::| ||||||: ugcagCUGUAUUGAAAAUCAAGa 2 18 200 222 [dm3:3L:12185305-12185327:-] 0.6101 136 0 -12.01 -0.1269 MIMAT0005507 dme-miR-137 39394 thoc6 gaUGCACA---UAAGAGUUCGUUAu |: ||| ||| ||||||| acAUCUGUUCGAUUGGAAAGCAAUu 2 21 311 335 [dm3:3L:12185192-12185216:-] 0.6453 147 7 -9.18 -0.4117 MIMAT0005030 dme-miR-1017 39394 thoc6 ccuacucaaacCCAUCUCGAAAg | ||||||||| auaauaagaaaGCUAGAGCUUUa 2 13 252 274 [dm3:3L:12185253-12185275:-] 0.3894 152 7 -11.34 -1.0062

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score thoc6 RAID00729878 dme-miR-282-5p miRNA MIMAT0000346 thoc6 mRNA 39394 Prediction 0.1828 thoc6 RAID00948731 dme-miR-4-3p miRNA MIMAT0000109 thoc6 mRNA 39394 Prediction 0.2202 thoc6 RAID01735746 dme-miR-79-3p miRNA MIMAT0000352 thoc6 mRNA 39394 Prediction 0.1828 thoc6 RAID02508704 dme-miR-1017-3p miRNA MIMAT0005030 thoc6 mRNA 39394 Prediction 0.2202 thoc6 RAID03411593 dme-miR-278-3p miRNA MIMAT0000339 thoc6 mRNA 39394 Prediction 0.1828 thoc6 RAID03835256 dme-miR-315-5p miRNA MIMAT0000407 thoc6 mRNA 39394 Prediction 0.1828 thoc6 RAID03958484 dme-miR-137-3p miRNA MIMAT0005507 thoc6 mRNA 39394 Prediction 0.1828