DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 39520 CG10083 auuugcAUAUGAC-U-UACAUAGg | | :|| | ||||||: caggguUCUUUUGUAUAUGUAUUa 2 17 405 428 [dm3:3L:13476686-13476709:-] 0.5491 126 0 -8.98 -0.1348 MIMAT0005509 dme-miR-991 39520 CG10083 ugAAAGGUUUGAUGUUGAAAUu |||| | | || ||||||: cuUUUCGAUAAUA-AACUUUGa 2 21 447 467 [dm3:3L:13476647-13476667:-] 0.5491 146 0 -14.45 -0.2022 MIMAT0005521 dme-miR-1001 39520 CG10083 acuaggaacccUCAAAUGGGu | ||||||| gcuacuuaaacACUUUACCCc 2 11 90 110 [dm3:3L:13477004-13477024:-] 0.5218 142 7 -9.02 -0.7428 MIMAT0011784 dme-miR-2279* 39520 CG10083 uuaAAGUGUGUGUCUAUAA-AUu ||:::|:|| ||||| || ccaUUUGUAUAC--AUAUUAUAu 2 20 274 294 [dm3:3L:13476820-13476840:-] 0.5491 120 0 -6.89 -0.6430 MIMAT0011791 dme-miR-2283 39520 CG10083 uaacagcauaaguacUAUAAAAg ||||||| augcagcuagcaacuAUAUUUUg 2 9 54 76 [dm3:3L:13477038-13477060:-] 0.4622 140 7 -2.74 -0.2402 MIMAT0012204 dme-miR-2495 39520 CG10083 ucagucgggUUAACUUCACGGu || ||||||| ------ggaAACCCAAGUGCCa 2 14 1 16 [dm3:3L:13477098-13477113:-] 0.4159 141 7 -17.59 -0.3365 MIMAT0012216 dme-miR-2501 39520 CG10083 aaucggguccgugagGUUUGAAug :|||||| uaaccuuuucgauaaUAAACUUug 3 10 443 466 [dm3:3L:13476648-13476671:-] 0.5491 121 0 -11.04 -0.1616 MIMAT0000113 dme-miR-8 39520 CG10083 cuguagaaaUGGA-CUGUCAUAAu ||:| | ||||||| aaaguaaccACUUAGUCAGUAUUu 2 15 359 382 [dm3:3L:13476732-13476755:-] 0.5491 149 7 -10.02 -0.8009 MIMAT0000334 dme-miR-92a 39520 CG10083 uauccggccCUGUU--CACGUUac ||:|| |||||| auaaacuuuGAUAAUUGUGCAAcc 3 14 457 480 [dm3:3L:13476634-13476657:-] 0.5491 128 0 -10.81 -0.1727 MIMAT0000358 dme-miR-92b 39520 CG10083 cguccGGCCCUGAUCACGUUaa ::| | | |||||| aaacuUUGAUAAUUGUGCAAcc 3 18 459 480 [dm3:3L:13476634-13476655:-] 0.5491 125 0 -8.77 -0.1727 MIMAT0000390 dme-miR-304 39520 CG10083 gaGUGUA-AAUGUUUAACUCUAAu :|::| |||: :|| |||||| uaUAUGUAUUAUUGAUCGAGAUUu 2 22 418 441 [dm3:3L:13476673-13476696:-] 0.5491 136 6 -8.70 -0.1669 MIMAT0000402 dme-miR-310 39520 CG10083 uuuccGGCCCUUCACACGUUau ::| || ||||||| aaacuUUGAUAAUUGUGCAAcc 3 18 459 480 [dm3:3L:13476634-13476655:-] 0.5491 133 0 -9.19 -0.1727 MIMAT0000403 dme-miR-311 39520 CG10083 aguccGGCCACUUACACGUUau ::| | | ||||||| aaacuUUGAUAAUUGUGCAAcc 3 18 459 480 [dm3:3L:13476634-13476655:-] 0.5491 133 0 -8.87 -0.1710 MIMAT0000404 dme-miR-312 39520 CG10083 aguccggcagaguuCACGUUau |||||| aaacuuugauaauuGUGCAAcc 3 9 459 480 [dm3:3L:13476634-13476655:-] 0.5491 120 0 -6.53 -0.1743 MIMAT0000405 dme-miR-313 39520 CG10083 agcccGACACUUUU--CACGUUau || ||| || |||||| auaaaCUUUGAUAAUUGUGCAAcc 3 18 457 480 [dm3:3L:13476634-13476657:-] 0.5491 136 0 -10.08 -0.1694 MIMAT0000412 dme-miR-iab-4-5p 39520 CG10083 aguccuauGUAAGUCAUAUGca ||||: |||||| guuguuccCAUUU-GUAUACau 3 15 267 287 [dm3:3L:13476827-13476847:-] 0.5491 132 0 -8.74 -0.1237 MIMAT0000413 dme-miR-iab-4-3p 39520 CG10083 caAUGC-AUAUGACU-UCCAUAUGgc |||| |:| | | |||||| caUACGUUGUUCCCAUUUGUAUACau 3 23 262 287 [dm3:3L:13476827-13476852:-] 0.5491 128 0 -10.71 -0.1349 MIMAT0005463 dme-miR-iab-4as-5p 39520 CG10083 gccaUAUGGAAGUCAUA-UGCAUu |||:: |:| ||| ||||| auacAUAUUAUUA-UAUAACGUAu 2 20 213 235 [dm3:3L:13476879-13476901:-] 0.5552 125 0 -7.56 -1.1683 MIMAT0005467 dme-miR-190 39520 CG10083 guugguucuUAUA-GUUUGUAUAGa || | || ||||||: cuguuuuuuAUCUACAUACAUAUUa 2 16 198 222 [dm3:3L:13476892-13476916:-] 0.5613 134 0 -6.18 -0.3040 MIMAT0005467 dme-miR-190 39520 CG10083 guugguucuUAUA-GUUUGUAUAGa || | :| ||||||: guuguucccAUUUGUAUACAUAUUa 2 16 267 291 [dm3:3L:13476823-13476847:-] 0.5491 130 0 -8.08 -0.1602 MIMAT0005483 dme-miR-1002 39520 CG10083 agcgggaaacAUAGGUGAUGAAUu ||| :||||||| ggauccggacUAU-AGCUACUUAa 2 15 76 98 [dm3:3L:13477016-13477038:-] 0.4920 144 7 -14.66 -0.8701 MIMAT0005484 dme-miR-968 39520 CG10083 guUGGGAAA-UUA--CC---UA-UGAUGAAu |: :||| :|| || || :|||||| cuAUAUUUUGGAUCCGGACUAUAGCUACUUa 2 23 67 97 [dm3:3L:13477017-13477047:-] 0.4920 126 6 -16.05 -0.1179 MIMAT0005492 dme-miR-976 39520 CG10083 cgUAACUACUAUUG---AUUAGGUu ||| || ||||| ||||||| uuAUU-AU-AUAACGUAUAAUCCAu 2 21 220 242 [dm3:3L:13476872-13476894:-] 0.5552 155 7 -9.47 -0.9314 MIMAT0005506 dme-miR-989 39520 CG10083 caagguGAU-GCAGUGUAGUGu :|| ||| ||||||| agauuuUUAUCGU-ACAUCACg 2 16 174 194 [dm3:3L:13476920-13476940:-] 0.5613 148 7 -15.85 -0.6842 MIMAT0005516 dme-miR-252 39520 CG10083 gaggACGCC-GUGAUC-AUGAAUc | ||| | ||| |||||| uggaUCCGGACUAUAGCUACUUAa 2 19 75 98 [dm3:3L:13477016-13477039:-] 0.4920 121 6 -12.55 -0.8638 MIMAT0005019 dme-miR-1006 39520 CG10083 gaUACUUAUUCUUUAGCU-UAAAu ||| || | :||||| |||| auAUGUAUUAUUGAUCGAGAUUUa 2 22 419 442 [dm3:3L:13476672-13476695:-] 0.5491 133 0 -11.80 -1.1783

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Abp1 RAID00334180 dme-miR-iab-4-3p miRNA MIMAT0000413 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID00359617 dme-miR-971-3p miRNA MIMAT0005487 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID00593729 dme-miR-1002-5p miRNA MIMAT0005483 Abp1 mRNA 39520 Prediction 0.2202 Abp1 RAID00655726 dme-miR-304-5p miRNA MIMAT0000390 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID00823056 dme-miR-311-3p miRNA MIMAT0000403 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID00882855 dme-miR-1006-3p miRNA MIMAT0005019 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID01178308 dme-miR-92a-3p miRNA MIMAT0000334 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID01590787 dme-miR-263b-5p miRNA MIMAT0000362 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID01600977 dme-miR-1013-3p miRNA MIMAT0005026 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID01662434 dme-miR-310-3p miRNA MIMAT0000402 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02021075 dme-miR-190-5p miRNA MIMAT0005467 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02125641 dme-miR-1001-5p miRNA MIMAT0005521 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02140557 dme-miR-124-3p miRNA MIMAT0000351 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02149946 dme-miR-92b-3p miRNA MIMAT0000358 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02323347 dme-miR-8-3p miRNA MIMAT0000113 Abp1 mRNA 39520 Prediction 0.2381 Abp1 RAID02419196 dme-miR-1012-3p miRNA MIMAT0005025 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID02543852 dme-miR-976-3p miRNA MIMAT0005492 Abp1 mRNA 39520 Prediction 0.2202 Abp1 RAID02777277 dme-miR-252-5p miRNA MIMAT0005516 Abp1 mRNA 39520 Prediction 0.2202 Abp1 RAID02906884 dme-miR-989-3p miRNA MIMAT0005506 Abp1 mRNA 39520 Prediction 0.2202 Abp1 RAID02975821 dme-miR-1000-5p miRNA MIMAT0005520 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID03080704 dme-miR-968-5p miRNA MIMAT0005484 Abp1 mRNA 39520 Prediction 0.2202 Abp1 RAID03185107 dme-miR-313-3p miRNA MIMAT0000405 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID03328934 dme-miR-iab-4-5p miRNA MIMAT0000412 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID03439267 dme-miR-980-3p miRNA MIMAT0005496 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID03480555 dme-miR-iab-8-5p miRNA MIMAT0005463 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID03873472 dme-miR-33-5p miRNA MIMAT0000342 Abp1 mRNA 39520 Prediction 0.1828 Abp1 RAID04060966 dme-miR-312-3p miRNA MIMAT0000404 Abp1 mRNA 39520 Prediction 0.1828