DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 39735 elgi ucagcguccgagguGAAUUUAUAAAu || |||||||| acuuacuuaaauuuCUGAAAUAUUUg 2 13 382 407 [dm3:3L:15951452-15951477:+] 0.4789 152 7 -8.33 -0.8534 MIMAT0005488 dme-miR-972 39735 elgi cggauuuauAAGCAUAACAUGu ||| :|||||| augacgacuUUCAAGUUGUACa 2 14 149 170 [dm3:3L:15951219-15951240:+] 0.5037 133 6 -9.43 -0.1688 MIMAT0005021 dme-miR-1008 39735 elgi acAUUUGUGUUUUUCGACACu |:| : |::|||||||| uuUGAUGGAAGGAAGCUGUGa 2 20 327 347 [dm3:3L:15951397-15951417:+] 0.4789 155 7 -16.91 -0.7295 MIMAT0005026 dme-miR-1013 39735 elgi gcucAAGCCG-UAUGAAAAUa ||:| | ||||||||| aauaUUUGUCAAUACUUUUAg 2 17 400 420 [dm3:3L:15951470-15951490:+] 0.4789 159 7 -9.91 -0.9546 MIMAT0011784 dme-miR-2279* 39735 elgi uuaaAGUGUGUGUC-UAUAAAUu | |:| |||| |||||| agagUAAUAAACAGUUUAUUUAa 2 19 434 456 [dm3:3L:15951504-15951526:+] 0.4789 129 6 -9.41 -0.1240 MIMAT0011784 dme-miR-2279* 39735 elgi uuaaAGUGUGUGUCUAUAA-AUu |:| | ||| ||||| || agcaUUAAAAACA-AUAUUGUAa 2 19 92 113 [dm3:3L:15951162-15951183:+] 0.5037 120 0 -4.55 -1.0047 MIMAT0012199 dme-miR-2492 39735 elgi aaaCUUUCGAGAGCUGUUUUGUa |:|| |||| ||||||| uaaGGAAAAACUCG-CAAAACAa 2 21 111 132 [dm3:3L:15951181-15951202:+] 0.5037 158 7 -15.62 -0.7315 MIMAT0012199 dme-miR-2492 39735 elgi aaacuuucgagagcugUUUUGUa |||||| guaagaguaagcauuaAAAACAa 2 8 83 105 [dm3:3L:15951153-15951175:+] 0.5037 120 6 -7.44 -0.1758 MIMAT0012214 dme-miR-2500* 39735 elgi ccauaaCAUAUACACAC-AAGGAAUg || | ||| || ||||||| ugcucaGU-UUUGU-UGAUUCCUUAa 2 20 58 81 [dm3:3L:15951128-15951151:+] 0.5037 150 7 -11.86 -0.9822 MIMAT0012216 dme-miR-2501 39735 elgi aaucgggucCGUGAGGU-UUGAAUg |:|:| || |||||| uuuaaauucGUAUUGCACAACUUAc 2 16 363 387 [dm3:3L:15951433-15951457:+] 0.4789 123 6 -13.89 -1.0501 MIMAT0000319 dme-miR-263a 39735 elgi cacuuaagaaggucacgGUAAUUg |||||| cuuaacguaagaguaagCAUUAAa 2 8 77 100 [dm3:3L:15951147-15951170:+] 0.5037 120 6 -6.28 -0.1822 MIMAT0000391 dme-miR-305 39735 elgi gucucguggacuacuuCAUGUUa |||||| ugacgacuuucaaguuGUACAAa 2 8 150 172 [dm3:3L:15951220-15951242:+] 0.5037 120 6 -10.30 -0.1735 MIMAT0005504 dme-miR-987 39735 elgi guaGUUAGGUCUGAUA-AAUGAAAu ||| | | ||| ||||||| guaCAAAAAAUA-UAUAUUACUUUc 2 22 166 189 [dm3:3L:15951236-15951259:+] 0.5037 150 7 -5.75 -0.9143 MIMAT0005504 dme-miR-987 39735 elgi guAGUUAGGUCUGAUAAAUGAAau ||: ::: || | |||||| auUCGUAUUGCACAACUUACUUaa 3 23 368 391 [dm3:3L:15951438-15951461:+] 0.4789 134 0 -6.15 -0.1252 MIMAT0005513 dme-miR-994 39735 elgi uaGUGCCGAUGAUAAAGGAAUc || :|::|: ||||||| cuCAGUUUUGUUGAUUCCUUAa 2 21 60 81 [dm3:3L:15951130-15951151:+] 0.5037 152 7 -11.68 -0.9912 MIMAT0005516 dme-miR-252 39735 elgi gaGGACGCCGUGAU-CAUGAAUc | | : |||| | |||||| uuCGUAUUGCACAACUUACUUAa 2 21 369 391 [dm3:3L:15951439-15951461:+] 0.4789 123 6 -9.87 -0.1410

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score elgi RAID00018342 dme-miR-994-5p miRNA MIMAT0005513 elgi mRNA 39735 Prediction 0.2202 elgi RAID00116203 dme-miR-1002-5p miRNA MIMAT0005483 elgi mRNA 39735 Prediction 0.1828 elgi RAID00440394 dme-miR-987-5p miRNA MIMAT0005504 elgi mRNA 39735 Prediction 0.2202 elgi RAID00715855 dme-miR-5-5p miRNA MIMAT0000110 elgi mRNA 39735 Prediction 0.1828 elgi RAID01044759 dme-miR-1008-3p miRNA MIMAT0005021 elgi mRNA 39735 Prediction 0.1828 elgi RAID01102285 dme-miR-1013-3p miRNA MIMAT0005026 elgi mRNA 39735 Prediction 0.1828 elgi RAID01550003 dme-mir-2a-2 miRNA MI0000118 elgi mRNA 39735 Prediction 0.1828 elgi RAID01895059 dme-miR-263a-5p miRNA MIMAT0000319 elgi mRNA 39735 Prediction 0.1828 elgi RAID01921966 dme-bantam-3p miRNA MIMAT0000365 elgi mRNA 39735 Prediction 0.1828 elgi RAID02278634 dme-miR-252-5p miRNA MIMAT0005516 elgi mRNA 39735 Prediction 0.2202 elgi RAID03089147 dme-miR-972-3p miRNA MIMAT0005488 elgi mRNA 39735 Prediction 0.1828 elgi RAID03144419 dme-miR-2c-3p miRNA MIMAT0000411 elgi mRNA 39735 Prediction 0.1828 elgi RAID03381419 dme-miR-305-5p miRNA MIMAT0000391 elgi mRNA 39735 Prediction 0.2202 elgi RAID03967984 dme-miR-1-3p miRNA MIMAT0000105 elgi mRNA 39735 Prediction 0.1828