DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 39874 CG13025 ucagcgucCGAGGUGAAUUUAUAAAu |:| ||| | |||||| aaauauccGUUACAC--AUAUAUUUa 2 19 922 945 [dm3:3L:16769749-16769772:-] 0.5510 123 6 -9.00 -0.2039 MIMAT0005499 dme-miR-983 39874 CG13025 agUAAU-CA--AGCUUUGCAUAAUa |||| || |||: ||||||| ugAUUAGGUAAUCGGUUCGUAUUAa 2 21 1015 1039 [dm3:3L:16769655-16769679:-] 0.4765 158 7 -18.01 -1.1315 MIMAT0005502 dme-miR-985 39874 CG13025 acGGGCUGGUAACCUUGUAAAc :||| ::||| ||||||| uuUCCGUUUAUU-AAACAUUUg 2 21 134 154 [dm3:3L:16770540-16770560:-] 0.4684 158 7 -18.27 -0.7726 MIMAT0005502 dme-miR-985 39874 CG13025 acgggcugGUAACCUUGUAAac :|| |||||| uuuauauaUAUAUAAACAUUag 3 15 942 963 [dm3:3L:16769731-16769752:-] 0.5510 122 0 -4.64 -0.1751 MIMAT0005509 dme-miR-991 39874 CG13025 ugaAAGGUUUGAUGUUGAAAUu ||:||| :|| ||||||| gacUUUCAACUUA-AACUUUAa 2 20 894 914 [dm3:3L:16769780-16769800:-] 0.5323 165 7 -16.09 -1.1668 MIMAT0010206 dme-miR-995* 39874 CG13025 gcgucgaggguGUA-UUAAGCCc :|| ||||||| aaguaaauguuUAUGAAUUCGGu 2 12 538 560 [dm3:3L:16770134-16770156:-] 0.4966 142 7 -10.59 -0.6572 MIMAT0011784 dme-miR-2279* 39874 CG13025 uuaaaguGUGUGUCUAUAAAUu :||||| ||||||| uauccguUACACAUAUAUUUAu 2 16 925 946 [dm3:3L:16769748-16769769:-] 0.5510 163 7 -11.73 -1.1508 MIMAT0011785 dme-miR-2279 39874 CG13025 uuuauUUAUAGAAGCGCACUUu | || :||: |||||| ugugcAUUAGUUUUCCGUGAAa 2 18 11 32 [dm3:3L:16770662-16770683:-] 0.4441 129 6 -14.95 -0.2598 MIMAT0011786 dme-miR-2280 39874 CG13025 uauaaaauaACGGUUCGAUUCu | ::|||||||| uaaacgagcUUUUAAGCUAAGu 2 14 89 110 [dm3:3L:16770584-16770605:-] 0.4441 149 7 -11.97 -0.8685 MIMAT0011787 dme-miR-2280* 39874 CG13025 agucaaucgaaccUUCAUUUAa |||||||| cauuuccaagcccAAGUAAAUg 2 10 525 546 [dm3:3L:16770148-16770169:-] 0.4966 145 7 -7.42 -0.4380 MIMAT0011787 dme-miR-2280* 39874 CG13025 agucaAUCGAACCUUCAU-UUAa || :|| ||||| ||| aucuaUACUUUUUAAGUAUAAUu 2 18 745 767 [dm3:3L:16769927-16769949:-] 0.5136 121 0 -4.94 -1.0585 MIMAT0011791 dme-miR-2283 39874 CG13025 uaacaGC-AUAAGUACUAUAAAag || || ||| |||||| auaucCGUUACACAU-AUAUUUau 3 19 924 946 [dm3:3L:16769748-16769770:-] 0.5510 131 0 -6.27 -0.1168 MIMAT0012196 dme-miR-2489 39874 CG13025 ugacguuuauguuGUAUGUUAu |||||||| aaaauguuuuaucCAUACAAUa 2 10 336 357 [dm3:3L:16770337-16770358:-] 0.4679 145 7 -10.82 -0.8061 MIMAT0012209 dme-miR-2497 39874 CG13025 gacgUUUG-UAACAUUUACAACa ||:| || | |||||||| uauaAAGCAAUAGAAAAUGUUGg 2 19 281 303 [dm3:3L:16770391-16770413:-] 0.4679 161 7 -10.83 -0.5525 MIMAT0012216 dme-miR-2501 39874 CG13025 aaUCGGGUCCGUGAGGUUUGAAUg | |::| | |||:: |||||| auAACUUAAG-ACUUUCAACUUAa 2 23 885 907 [dm3:3L:16769787-16769809:-] 0.5136 132 6 -11.75 -0.1145 MIMAT0000106 dme-miR-2a 39874 CG13025 cgAGUAGUUUCGACCGACACUau |:| | || :| |||||| uuUUAGCUAAUUU--CUGUGAaa 3 22 52 72 [dm3:3L:16770622-16770642:-] 0.4441 130 0 -10.47 -0.1128 MIMAT0000106 dme-miR-2a 39874 CG13025 cgaguaguuucgaccGACACUAu :|||||| auaauuuuguauauuUUGUGAUg 2 9 762 784 [dm3:3L:16769910-16769932:-] 0.5136 124 6 -11.35 -0.1871 MIMAT0000107 dme-miR-2b 39874 CG13025 cgAGGAGUUUCG---ACCGACACUau |:||: ||| | |||||| uuUUCUUUUAGCUAAUUUCUGUGAaa 3 22 47 72 [dm3:3L:16770622-16770647:-] 0.4441 128 0 -17.17 -0.1218 MIMAT0000107 dme-miR-2b 39874 CG13025 cgaggaguuucgaccGACACUAu :|||||| auaauuuuguauauuUUGUGAUg 2 9 762 784 [dm3:3L:16769910-16769932:-] 0.5136 124 6 -10.36 -0.1871 MIMAT0000111 dme-miR-6 39874 CG13025 uuuuucuugucgguGACACUAu :|||||| uaauuuuguauauuUUGUGAUg 2 9 763 784 [dm3:3L:16769910-16769931:-] 0.5136 124 6 -8.47 -0.1853 MIMAT0000111 dme-miR-6 39874 CG13025 uuuuucUUG-UCGGUGACACUau |:| | :: |||||| ucuuuuAGCUAAUUUCUGUGAaa 3 17 50 72 [dm3:3L:16770622-16770644:-] 0.4441 123 0 -11.88 -0.1230 MIMAT0000114 dme-miR-9a 39874 CG13025 aguaugucgaUCUAUUGGUUUcu | ||||||||| uuuuccgugaAAAUAACCAAAaa 3 14 21 43 [dm3:3L:16770651-16770673:-] 0.4441 137 0 -9.99 -0.1500 MIMAT0000116 dme-miR-11 39874 CG13025 cguucuugagucuGACACUAc :|||||| aauuuuguauauuUUGUGAUg 2 9 764 784 [dm3:3L:16769910-16769930:-] 0.5136 124 6 -11.48 -0.1871 MIMAT0000116 dme-miR-11 39874 CG13025 cguucUUGAGU-CUGACACUac |:|| | |||||| cuuuuAGCUAAUUUCUGUGAaa 3 17 51 72 [dm3:3L:16770622-16770643:-] 0.4441 123 0 -10.40 -0.1206 MIMAT0000118 dme-miR-13a 39874 CG13025 ugAGUAGUUUUACCGACACUau |:| | ||| |||||| uuUUAGC-UAAUUUCUGUGAaa 3 21 52 72 [dm3:3L:16770622-16770642:-] 0.4441 130 0 -8.65 -0.1206 MIMAT0000118 dme-miR-13a 39874 CG13025 ugAGUAGUUUUACCGACACUAu |: | | || :|||||| aaUUUUGUAUAU-UUUGUGAUg 2 21 764 784 [dm3:3L:16769910-16769930:-] 0.5136 126 6 -8.59 -0.1871 MIMAT0000119 dme-miR-13b 39874 CG13025 ugagcaguuUUACCGACACUau ||| |||||| cuuuuagcuAAUUUCUGUGAaa 3 14 51 72 [dm3:3L:16770622-16770643:-] 0.4441 129 0 -8.18 -0.1206 MIMAT0000119 dme-miR-13b 39874 CG13025 ugAGCAGUUUUACCGACACUAu |:|| | || :|||||| uuUUGU--AUAU-UUUGUGAUg 2 21 766 784 [dm3:3L:16769910-16769928:-] 0.5136 127 6 -11.40 -0.1871 MIMAT0000347 dme-miR-283 39874 CG13025 ucuuaauggucgacUAUAAAu |||||| uauccguuacacauAUAUUUa 2 8 925 945 [dm3:3L:16769749-16769769:-] 0.5510 120 6 -6.29 -0.2039 MIMAT0000392 dme-miR-9c 39874 CG13025 agAUGUCGAUCUUA-UGGUUUcu | | |: | ||| |||||| uuUUCCGUGAAAAUAACCAAAaa 3 21 21 43 [dm3:3L:16770651-16770673:-] 0.4441 135 0 -6.02 -0.1500 MIMAT0000395 dme-miR-9b 39874 CG13025 guAUGUCGAUUUUAGUGGUUUcu | | |: ||||| |||||| uuUUCCGUGAAAAUAACCAAAaa 3 22 21 43 [dm3:3L:16770651-16770673:-] 0.4441 149 0 -8.35 -0.1471 MIMAT0000399 dme-miR-308 39874 CG13025 gaguguCAUAUUAGGACACUAa |||| ||::|||||| aauuuuGUAU-AUUUUGUGAUg 2 17 764 784 [dm3:3L:16769910-16769930:-] 0.5136 146 6 -12.78 -0.1785 MIMAT0000399 dme-miR-308 39874 CG13025 gagugucauAUU-AGGACACUaa ||| |:|||||| ucuuuuagcUAAUUUCUGUGAaa 3 14 50 72 [dm3:3L:16770622-16770644:-] 0.4441 132 0 -14.00 -0.1230 MIMAT0000407 dme-miR-315 39874 CG13025 cgAAAGACUCGUUGUUAGUUUu |||:| |:| ||||||| uuUUUUUUCGUA--AAUCAAAa 2 21 639 658 [dm3:3L:16770036-16770055:-] 0.4491 153 7 -9.01 -0.8823 MIMAT0000409 dme-miR-317 39874 CG13025 ugaccuaugguggucgACACAAGu ||||||| ugugucuguguguuuaUGUGUUCg 2 9 807 830 [dm3:3L:16769864-16769887:-] 0.5136 140 7 -17.70 -0.9609 MIMAT0000411 dme-miR-2c 39874 CG13025 cgGGUAGUUUCGACCGACACUau ::| | || :| |||||| uuUUAGCUAAUUU--CUGUGAaa 3 22 52 72 [dm3:3L:16770622-16770642:-] 0.4441 126 0 -10.20 -0.1128 MIMAT0000411 dme-miR-2c 39874 CG13025 cggguaguuucgaccGACACUAu :|||||| auaauuuuguauauuUUGUGAUg 2 9 762 784 [dm3:3L:16769910-16769932:-] 0.5136 124 6 -10.52 -0.1871 MIMAT0005463 dme-miR-iab-4as-5p 39874 CG13025 gccAUAUGGAAGUCAUAUGCAUu || : :| || ||||||| uguUAAGAUUAGAGAAUACGUAc 2 21 835 857 [dm3:3L:16769837-16769859:-] 0.5136 152 7 -9.70 -0.4742 MIMAT0005467 dme-miR-190 39874 CG13025 guUGGUUCUUA--UAGUUUGUAUAga ||:|| || :|:| |||||| gaACUAAAUAUCCGUUACACAUAUau 3 23 917 942 [dm3:3L:16769752-16769777:-] 0.5510 141 0 -10.08 -0.1052 MIMAT0005469 dme-miR-956 39874 CG13025 uuaccuaaucucacCAGAGCUUu |||||||| auucauuccugacaGUCUCGAAa 2 10 441 463 [dm3:3L:16770231-16770253:-] 0.4679 145 7 -14.02 -0.4843 MIMAT0005486 dme-miR-970 39874 CG13025 uaucggcgcacacaGAAUACu |||||| aaacauuagauuaaCUUAUGc 2 8 955 975 [dm3:3L:16769719-16769739:-] 0.5510 120 6 -6.14 -0.1502 MIMAT0005507 dme-miR-137 39874 CG13025 gaUGCACAUAAGAGUUCGUUAu | || | | | ||||||| auAAGUCUUGUAUAAAGCAAUa 2 21 271 292 [dm3:3L:16770402-16770423:-] 0.4679 152 7 -11.92 -1.0438 MIMAT0005512 dme-miR-993 39874 CG13025 ucuAUGGACAUCUCUGCUCGAAg |||: || | |||||||| gacUACUGAUAUAAACGAGCUUu 2 21 78 100 [dm3:3L:16770594-16770616:-] 0.4441 164 7 -16.09 -0.9539 MIMAT0005030 dme-miR-1017 39874 CG13025 ccuacucaaacccauCUCGAAAg ||||||| acuacugauauaaacGAGCUUUu 2 9 79 101 [dm3:3L:16770593-16770615:-] 0.4441 140 7 -8.06 -0.5693

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG13025 RAID00018737 dme-miR-9c-5p miRNA MIMAT0000392 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID00260718 dme-miR-137-3p miRNA MIMAT0005507 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID00266328 dme-miR-956-3p miRNA MIMAT0005469 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID00591376 dme-miR-985-3p miRNA MIMAT0005502 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID00846159 dme-miR-306-5p miRNA MIMAT0000393 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID00954838 dme-miR-13a-3p miRNA MIMAT0000118 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID01029995 dme-miR-970-3p miRNA MIMAT0005486 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID01055742 dme-miR-315-5p miRNA MIMAT0000407 CG13025 mRNA 39874 Prediction 0.2381 CG13025 RAID01073464 dme-miR-11-3p miRNA MIMAT0000116 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID01279252 dme-miR-283-5p miRNA MIMAT0000347 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID01414082 dme-miR-993-3p miRNA MIMAT0005512 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID01423016 dme-miR-13b-3p miRNA MIMAT0000119 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID01483999 dme-bantam-3p miRNA MIMAT0000365 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID01902951 dme-miR-9a-5p miRNA MIMAT0000114 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID02018539 dme-miR-1017-3p miRNA MIMAT0005030 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID02133719 dme-miR-252-5p miRNA MIMAT0005516 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID02344923 dme-miR-6-3p miRNA MIMAT0000111 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID02362527 dme-miR-277-3p miRNA MIMAT0000338 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID02643226 dme-miR-190-5p miRNA MIMAT0005467 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID02949938 dme-miR-308-3p miRNA MIMAT0000399 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03005258 dme-miR-317-3p miRNA MIMAT0000409 CG13025 mRNA 39874 Prediction 0.2202 CG13025 RAID03067838 dme-miR-975-5p miRNA MIMAT0005491 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03180221 dme-miR-962-5p miRNA MIMAT0005476 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03235825 dme-miR-8-3p miRNA MIMAT0000113 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03278708 dme-miR-2a-3p miRNA MIMAT0000106 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03360621 dme-miR-87-3p miRNA MIMAT0000361 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03411764 dme-miR-1013-3p miRNA MIMAT0005026 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03605142 dme-miR-1002-5p miRNA MIMAT0005483 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03665745 dme-miR-991-3p miRNA MIMAT0005509 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03681194 dme-miR-iab-8-5p miRNA MIMAT0005463 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03719528 dme-miR-2b-3p miRNA MIMAT0000107 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03780849 dme-miR-9b-5p miRNA MIMAT0000395 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03915401 dme-mir-13b-1 miRNA MI0000134 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID03995755 dme-miR-2c-3p miRNA MIMAT0000411 CG13025 mRNA 39874 Prediction 0.1828 CG13025 RAID04042046 dme-mir-2a-1 miRNA MI0000117 CG13025 mRNA 39874 Prediction 0.1828