DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39955 CG6322 auAGUAAAGUAUAC-GUUG-CAUUUAUGu |:||| | || :||: |||||| uuUUAUUGAAAUUGUUAAUAAAAAAUACa 2 26 220 248 [dm3:3L:17504972-17505000:-] 0.5694 123 6 -10.17 -0.4631 MIMAT0005488 dme-miR-972 39955 CG6322 cggauUUAUAAGCAUAACAUGu | || |: |||||||| auaccAUUACUU-UAUUGUACu 2 18 6 26 [dm3:3L:17505194-17505214:-] 0.5694 151 7 -8.32 -0.2715 MIMAT0005502 dme-miR-985 39955 CG6322 acgggcugguaaccUUGUAAAc ||||||| agacaauagcccaaAACAUUUc 2 9 111 132 [dm3:3L:17505088-17505109:-] 0.5694 140 7 -9.75 -1.0958 MIMAT0005026 dme-miR-1013 39955 CG6322 gcucaagccgUAUGAAAAua | |||||| cguaaauuuaAGACUUUUuu 3 11 204 223 [dm3:3L:17504997-17505016:-] 0.5694 122 0 -4.49 -0.2041 MIMAT0011787 dme-miR-2280* 39955 CG6322 agucaaucgaaccuuCAUUUAa |||||| gcgauguugcauuucGUAAAUu 2 8 190 211 [dm3:3L:17505009-17505030:-] 0.5694 120 6 -6.00 -0.1069 MIMAT0012199 dme-miR-2492 39955 CG6322 aaACUUUC-GAGAGC-UGUUUUGUa | |:|| | | | ||||||| uuUCAGAGACAAUAGCCCAAAACAu 2 22 105 129 [dm3:3L:17505091-17505115:-] 0.5694 143 7 -9.11 -0.7104 MIMAT0000120 dme-miR-14 39955 CG6322 auccucucucuuuUUCUGAcu |||||| auuucguaaauuuAAGACUuu 3 9 200 220 [dm3:3L:17505000-17505020:-] 0.5694 120 0 -4.95 -0.2369 MIMAT0000319 dme-miR-263a 39955 CG6322 cacuuaagAAGGUCACGGUAAUug ||::: | |||||| --------UUUUGAUACCAUUAcu 3 17 1 16 [dm3:3L:17505204-17505219:-] 0.5694 132 0 -6.55 -0.1895 MIMAT0000335 dme-miR-219 39955 CG6322 guucuuaaCGCAAAC--CUGUUAGu |||| | ||||||| accuguggGCGUACGCAGACAAUCu 2 16 28 52 [dm3:3L:17505168-17505192:-] 0.5694 146 7 -14.22 -0.4375 MIMAT0000338 dme-miR-277 39955 CG6322 acaGCAUGGUCUAUCACGUAAAu :| | | |||: ||||||| agaUGCAGC-GAUGUUGCAUUUc 2 21 183 204 [dm3:3L:17505016-17505037:-] 0.5694 154 7 -11.88 -0.5377 MIMAT0000390 dme-miR-304 39955 CG6322 gagUGUAAAUGUUUAACUCUAAu || ||| : ||||| ||| aagACUUUUUU--AUUGAAAUUg 2 21 213 233 [dm3:3L:17504987-17505007:-] 0.5694 125 0 -6.32 -0.1356 MIMAT0005479 dme-miR-932 39955 CG6322 gacguuacgugaugcCUUAACu |||||| uacauuuuugguagaGAAUUG- 2 8 245 265 [dm3:3L:17504955-17504975:-] 0.4681 120 6 -7.11 -0.1066 MIMAT0005504 dme-miR-987 39955 CG6322 guaguuAGGUCUGAUAAAUGAAAu |: | || | ||||||| ----uuUUGAUACCA-UUACUUUa 2 19 1 19 [dm3:3L:17505201-17505219:-] 0.5694 148 7 -8.38 -1.0421 MIMAT0005511 dme-miR-929 39955 CG6322 guuaGACUGAGGCAAUCC-CUc :|| :|::|||||| || uuugUUGUUUUUGUUAGGCGAa 2 18 157 178 [dm3:3L:17505042-17505063:-] 0.5694 125 0 -16.04 -0.7891 MIMAT0005520 dme-miR-1000 39955 CG6322 ugACGACACUGUC-CUGUUAUa ||:| | ||| ||||||| uuUGUUAUUUCAGAGACAAUAg 2 20 98 119 [dm3:3L:17505101-17505122:-] 0.5694 158 7 -14.89 -0.7369

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score U4-U6-60K RAID00280688 dme-miR-929-3p miRNA MIMAT0005511 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID00856685 dme-miR-304-5p miRNA MIMAT0000390 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID01460414 dme-miR-987-5p miRNA MIMAT0005504 U4-U6-60K mRNA 39955 Prediction 0.2202 U4-U6-60K RAID01777352 dme-miR-932-5p miRNA MIMAT0005479 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID01943078 dme-miR-972-3p miRNA MIMAT0005488 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID01992732 dme-miR-263a-5p miRNA MIMAT0000319 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID02164430 dme-miR-277-3p miRNA MIMAT0000338 U4-U6-60K mRNA 39955 Prediction 0.2202 U4-U6-60K RAID02354089 dme-miR-1000-5p miRNA MIMAT0005520 U4-U6-60K mRNA 39955 Prediction 0.2202 U4-U6-60K RAID02833330 dme-miR-219-5p miRNA MIMAT0000335 U4-U6-60K mRNA 39955 Prediction 0.2202 U4-U6-60K RAID03577092 dme-miR-985-3p miRNA MIMAT0005502 U4-U6-60K mRNA 39955 Prediction 0.1828 U4-U6-60K RAID03748618 dme-miR-14-3p miRNA MIMAT0000120 U4-U6-60K mRNA 39955 Prediction 0.1828