DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 40144 CG8786 gccccGCUCUC-UUACUAUUCc :|| || | ||||||| auuuuUGACAGCACUGAUAAGg 2 17 366 387 [dm3:3L:19631164-19631185:-] 0.4491 151 7 -13.77 -0.1194 MIMAT0000360 dme-miR-287 40144 CG8786 cacguuugcUAAAAGUUGUgu | | |||||| ccuccugguAAUAUCAACAgc 3 13 26 46 [dm3:3L:19631505-19631525:-] 0.6664 124 0 -7.61 -0.1001 MIMAT0000364 dme-miR-289 40144 CG8786 ucagcguccgaggugaAUUUAUAAAu ||||||||| cugcgaauggaaguaaUAAAUAUUUa 2 11 642 667 [dm3:3L:19630884-19630909:-] 0.4341 150 7 -13.23 -0.9089 MIMAT0000364 dme-miR-289 40144 CG8786 ucagcguCCGAGGUGAAU-UUA-UAAAu ||: ::| ||| ||| |||| augaaauGGUCUUAAUUACAAUCAUUUg 2 20 175 202 [dm3:3L:19631349-19631376:-] 0.4302 122 0 -7.57 -0.5484 MIMAT0000364 dme-miR-289 40144 CG8786 ucagcguCCGAG-GUGAAU--UUA-UAAAu | :|| :||||| ||| |||| acaauucGAUUCGUACUUAAUAAUCAUUUa 2 20 269 298 [dm3:3L:19631253-19631282:-] 0.4396 121 0 -10.69 -1.0280 MIMAT0000388 dme-miR-303 40144 CG8786 ugGUCAAAG-GACACUUUGGAUUu ||||||: | |||||| | agCAGUUUUAAAAUUAAACCUCAa 2 22 44 67 [dm3:3L:19631484-19631507:-] 0.6664 128 0 -13.77 -0.1917 MIMAT0005488 dme-miR-972 40144 CG8786 cgGAUUU-AUAAGCAUAA-CAUGu ||||| ||||| ||| |||| uuCUAAACAAUUCG-AUUCGUACu 2 21 263 285 [dm3:3L:19631266-19631288:-] 0.4302 133 0 -14.16 -0.9133 MIMAT0005499 dme-miR-983 40144 CG8786 aguaaUCAAGCUUUGCAU-AAUa | ||||| |||| ||| uaaacAAUUCGAUUCGUACUUAa 2 18 266 288 [dm3:3L:19631263-19631285:-] 0.4396 125 0 -11.30 -1.1124 MIMAT0005502 dme-miR-985 40144 CG8786 acgGGCUGGUAAC-CUUGUAAAc |:|: : ||| ||||||| uuaCUGGAUUUUGAUAACAUUUg 2 20 131 153 [dm3:3L:19631398-19631420:-] 0.4302 150 7 -15.28 -0.5483 MIMAT0005502 dme-miR-985 40144 CG8786 acgggcUGGUAACCUUGUAAAc :||| | ||||||| aaauguGCCA-AGAAACAUUUa 2 17 324 344 [dm3:3L:19631207-19631227:-] 0.4491 146 7 -8.81 -0.7311 MIMAT0005502 dme-miR-985 40144 CG8786 acgggcugguaaccuUGUAAAc |||||| ucgucuaauauaauuACAUUUa 2 8 420 441 [dm3:3L:19631110-19631131:-] 0.4491 120 6 -6.53 -0.2966 MIMAT0005502 dme-miR-985 40144 CG8786 acGGGCUGGUAACCU-UGUAAAc |:|| |:| | || |||||| ugCUCGCCUAAUCGAUACAUUUa 2 21 33 55 [dm3:3L:19632618-19632640:-] 0.4776 132 6 -14.22 -1.1047 MIMAT0011784 dme-miR-2279* 40144 CG8786 uuaaagugugUGUCUAUAAAUu |:| ||||||| aauggaaguaAUAAAUAUUUAc 2 13 647 668 [dm3:3L:19630883-19630904:-] 0.4341 148 7 -2.99 -0.7202 MIMAT0011784 dme-miR-2279* 40144 CG8786 uuaaagugugugucuAUAAAUu |||||| gaaacauaaauaaucUAUUUAa 2 8 287 308 [dm3:3L:19632365-19632386:-] 0.4638 120 6 -6.97 -0.2149 MIMAT0011788 dme-miR-2281* 40144 CG8786 aacguagacgucgacGUCUAUua |||||| cuuaaaacauaaaauCAGAUAuu 3 9 244 266 [dm3:3L:19632407-19632429:-] 0.5086 120 0 -9.31 -0.1066 MIMAT0011790 dme-miR-2282 40144 CG8786 uaagauaaAAAUCGAGUGGCua || | :|||||| accucaaaUUGAUUUCACCGca 3 15 61 82 [dm3:3L:19631469-19631490:-] 0.5530 130 0 -10.70 -0.1315 MIMAT0012198 dme-miR-2491 40144 CG8786 ucguuGA-CGUUUCCGUUGUCGc || |:|| ||||||| cccucCUGGUAAUAUCAACAGCa 2 18 25 47 [dm3:3L:19631504-19631526:-] 0.6664 148 7 -13.14 -1.2813 MIMAT0012199 dme-miR-2492 40144 CG8786 aaacuuucgagagcuGUUUUGua |||||| uuucaacaauuaaauCAAAACca 3 9 302 324 [dm3:3L:19631227-19631249:-] 0.4491 120 0 -3.81 -0.1732 MIMAT0012199 dme-miR-2492 40144 CG8786 aaacUUUCGA-GAGCUGUUUUGUa ||| | :|| :|||||| aaacAAACAUAUUCCUUAAAACAu 2 20 230 253 [dm3:3L:19632420-19632443:-] 0.5086 134 6 -8.97 -0.1080 MIMAT0012209 dme-miR-2497 40144 CG8786 gaCGUUUGUAACAUUUACAAca | |||:|| ||||||| aaGAAAAUAU--CAAAUGUUcc 3 21 56 75 [dm3:3L:19632598-19632617:-] 0.5534 137 0 -6.12 -0.1177 MIMAT0012210 dme-miR-2498* 40144 CG8786 guuuuuauUCGUAU-UGUCGGAAAu :| ||| | ||||||| gcauaucuGGAAUACAGAGCCUUUu 2 17 207 231 [dm3:3L:19631320-19631344:-] 0.4302 151 7 -13.45 -0.2436 MIMAT0012214 dme-miR-2500* 40144 CG8786 ccauaacauauacacACAAGGAAUg | ||||||| caggguaaacaaacaUAUUCCUUAa 2 11 224 248 [dm3:3L:19632425-19632449:-] 0.5534 142 7 -9.56 -1.2908 MIMAT0012215 dme-miR-2500 40144 CG8786 gacuccAGGUGUGUGUUUUAGg |: | |||:|||||| uauuccUUAAAACAUAAAAUCa 2 17 239 260 [dm3:3L:19632413-19632434:-] 0.5086 144 6 -13.85 -0.1734 MIMAT0012216 dme-miR-2501 40144 CG8786 aaucgGGUCCGUGAGGUUUGAAUg ::| |||:|: |||||| augaaUUAAGCAUUUACAACUUAg 2 20 446 469 [dm3:3L:19631082-19631105:-] 0.4491 131 6 -11.63 -0.1206 MIMAT0012216 dme-miR-2501 40144 CG8786 aaucggguccgugagGUUUGAAUg |||||||| ucaauuuuccccaaaCAAACUUAa 2 10 317 340 [dm3:3L:19632333-19632356:-] 0.4648 145 7 -14.34 -1.0216 MIMAT0000110 dme-miR-5 40144 CG8786 guauagUGUUGCUAGCAAGGAAa |:| | | :||||||| aagaaaAUAUCAAAUGUUCCUUu 2 18 56 78 [dm3:3L:19632595-19632617:-] 0.5534 153 7 -15.74 -1.1563 MIMAT0000110 dme-miR-5 40144 CG8786 guauagUGUUGCUAGCAAGGAAa |||| || |||||| ggguaaACAAACAU-AUUCCUUa 2 18 226 247 [dm3:3L:19632426-19632447:-] 0.5534 123 6 -8.33 -0.2767 MIMAT0000115 dme-miR-10-5p 40144 CG8786 uuguuuaagccUAGAUGUCCCa :||||||||| uagaaaagaauGUCUACAGGGu 2 12 208 229 [dm3:3L:19632444-19632465:-] 0.5534 151 7 -18.65 -1.0529 MIMAT0000332 dme-miR-274 40144 CG8786 uaaugggcaaucacagccaGUGUUUu |||||| guugggcaauaaaaaaaacCACAAAa 2 8 583 608 [dm3:3L:19630943-19630968:-] 0.4491 120 6 -11.22 -0.1105 MIMAT0000333 dme-miR-275 40144 CG8786 gcgcgcgAUGAAGUCCAUGGACu |:| |: ||||||| agagaaaUGCAGCGCGUACCUGa 2 17 115 137 [dm3:3L:19632536-19632558:-] 0.5534 148 7 -21.59 -0.6408 MIMAT0000335 dme-miR-219 40144 CG8786 guucuuaacgcaaaccUGUUAGu |||||| ugaaauggucuuaauuACAAUCa 2 8 176 198 [dm3:3L:19631353-19631375:-] 0.4302 120 6 -8.75 -0.1057 MIMAT0000337 dme-miR-276a 40144 CG8786 ucucgugccauacuuCAAGGAu |||||| aagaaaauaucaaauGUUCCUu 2 8 56 77 [dm3:3L:19632596-19632617:-] 0.5534 120 6 -9.04 -0.1070 MIMAT0000338 dme-miR-277 40144 CG8786 acagcauggucuaucaCGUAAAu |||||| uuaauuaaugaauuaaGCAUUUa 2 8 439 461 [dm3:3L:19631090-19631112:-] 0.4491 120 6 -6.76 -0.1373 MIMAT0000347 dme-miR-283 40144 CG8786 ucuuaAUGGUCGACUAUAAau || | | |||||| aaacaUAAAAUCAGAUAUUga 3 17 248 268 [dm3:3L:19632405-19632425:-] 0.5086 128 0 -5.93 -0.1861 MIMAT0000347 dme-miR-283 40144 CG8786 ucUUAAUGGUCGACUAUAAau | ||| :| | |||||| cuAUUUAAUA-C-GAUAUUca 3 20 301 319 [dm3:3L:19632354-19632372:-] 0.4643 127 0 -3.71 -0.1495 MIMAT0000348 dme-miR-284 40144 CG8786 guuaacgaccuuaguucaacgaCUGAAGu |||||| -----------acccgacucccGACUUCg 2 8 1 18 [dm3:3L:19631533-19631550:-] 0.6664 120 6 -11.98 -0.2086 MIMAT0000352 dme-miR-79 40144 CG8786 uacGAA--ACCAUUAGAUCGAAAu ||| | | ||:||||||| guaCUUAAUAAUCAUUUAGCUUUu 2 20 281 304 [dm3:3L:19631247-19631270:-] 0.4396 154 7 -10.89 -1.0333 MIMAT0000354 dme-miR-276b 40144 CG8786 ucucgugccauaauuCAAGGAu |||||| aagaaaauaucaaauGUUCCUu 2 8 56 77 [dm3:3L:19632596-19632617:-] 0.5534 120 6 -9.04 -0.1070 MIMAT0000362 dme-miR-263b 40144 CG8786 cacuuaagaggguCACGGUUc ||||||| aucaaaaccaaauGUGCCAAg 2 9 315 335 [dm3:3L:19631216-19631236:-] 0.4491 140 7 -17.58 -0.8808 MIMAT0000393 dme-miR-306 40144 CG8786 aaCUCUCAGUGAUUCAUGGACu || | || : ||||||| gaGAAAUGCAGCGCGUACCUGa 2 21 116 137 [dm3:3L:19632536-19632557:-] 0.5534 148 7 -17.31 -0.6370 MIMAT0000407 dme-miR-315 40144 CG8786 cgaAAGACUCGUUG--UUAGUUUu ||:| | |||: ||||||| agcUUUUCAACAAUUAAAUCAAAa 2 20 298 321 [dm3:3L:19631230-19631253:-] 0.4491 158 7 -14.10 -1.1657 MIMAT0005483 dme-miR-1002 40144 CG8786 agcgggaaacauaggugAUGAAUu |||||| cuaaacaauucgauucgUACUUAa 2 8 265 288 [dm3:3L:19631263-19631286:-] 0.4396 120 6 -11.28 -0.1189 MIMAT0005483 dme-miR-1002 40144 CG8786 agcgggaaacaUAGGUGAUGAAUu || ||||||| ---------aaAUAAUCUACUUAc 2 14 1 15 [dm3:3L:19632658-19632672:-] 0.5142 141 7 -7.31 -0.1291 MIMAT0005490 dme-miR-974 40144 CG8786 uuAUGAUGAAGAAACGAGCGAa ||:||:||: |||||||| aaUAUUAUUUUAAUGCUCGCUu 2 21 618 639 [dm3:3L:19630912-19630933:-] 0.4707 172 7 -23.44 -0.9926 MIMAT0005490 dme-miR-974 40144 CG8786 uuauGAUGAAGAAACGAGCGaa :||: |: |||||||| aagcUUAUAUUGUUGCUCGCcu 3 19 20 41 [dm3:3L:19632632-19632653:-] 0.4776 142 0 -15.36 -0.1058 MIMAT0005504 dme-miR-987 40144 CG8786 guAGUUAGGUCUGAUAAAU-GAAAu |:||| | |: ||||| |||| acUUAAU--A-AUCAUUUAGCUUUu 2 23 283 304 [dm3:3L:19631247-19631268:-] 0.4396 121 0 -5.61 -0.9647 MIMAT0005513 dme-miR-994 40144 CG8786 uagugccGAUGAUA-AAGGAAUc | | || ||||||| ggguaaaCAAACAUAUUCCUUAa 2 16 226 248 [dm3:3L:19632425-19632447:-] 0.5534 142 7 -6.88 -1.2908 MIMAT0005516 dme-miR-252 40144 CG8786 gaggacgccgUGAUCAUGAAUc |:| ||||||| aaacaauucgAUUCGUACUUAa 2 13 267 288 [dm3:3L:19631263-19631284:-] 0.4396 148 7 -8.45 -1.0242

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8786 RAID00211598 dme-miR-284-3p miRNA MIMAT0000348 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID00390907 dme-miR-306-5p miRNA MIMAT0000393 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID00463242 dme-miR-927-5p miRNA MIMAT0005501 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID00526319 dme-miR-274-5p miRNA MIMAT0000332 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID00944619 dme-miR-5-5p miRNA MIMAT0000110 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01262504 dme-miR-277-3p miRNA MIMAT0000338 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01338591 dme-miR-275-3p miRNA MIMAT0000333 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01385961 dme-miR-79-3p miRNA MIMAT0000352 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01626471 dme-miR-974-5p miRNA MIMAT0005490 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01719359 dme-miR-315-5p miRNA MIMAT0000407 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID01774036 dme-mir-10 miRNA MI0000130 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID02046489 dme-miR-276b-3p miRNA MIMAT0000354 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID02237380 dme-miR-987-5p miRNA MIMAT0005504 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID02252363 dme-miR-985-3p miRNA MIMAT0005502 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID02422390 dme-miR-252-5p miRNA MIMAT0005516 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID02629643 dme-miR-219-5p miRNA MIMAT0000335 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID02708956 dme-miR-10-5p miRNA MIMAT0000115 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID02781955 dme-miR-994-5p miRNA MIMAT0005513 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID03132985 dme-miR-263b-5p miRNA MIMAT0000362 CG8786 mRNA 40144 Prediction 0.2381 CG8786 RAID03391280 dme-miR-1002-5p miRNA MIMAT0005483 CG8786 mRNA 40144 Prediction 0.2202 CG8786 RAID03432505 dme-miR-283-5p miRNA MIMAT0000347 CG8786 mRNA 40144 Prediction 0.1828 CG8786 RAID03551743 dme-miR-276a-3p miRNA MIMAT0000337 CG8786 mRNA 40144 Prediction 0.1828