DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 40386 CG7611 auagUAA-AGUAUACGUUGCAUUUAUGu ||| ||| : || |||:||| uacgAUUAGCAUUAAUUACUUAAGUACa 2 24 170 197 [dm3:3L:21520934-21520961:+] 0.7298 138 0 -12.42 -0.1561 MIMAT0000364 dme-miR-289 40386 CG7611 ucaGCGUCCGAGGUGAAUUUAUAAAu || | : | | || ||||||| auaCGGCGAUGCGAAUU-AAUAUUUc 2 24 288 312 [dm3:3L:21521052-21521076:+] 0.5688 149 7 -9.11 -0.5180 MIMAT0012194 dme-miR-307-as* 40386 CG7611 gguaguguuggaggaACUCACu |||||| aguagcaaauggaugUGAGUGg 2 8 11 32 [dm3:3L:21520775-21520796:+] 0.6290 120 6 -12.29 -0.1604 MIMAT0012208 dme-miR-2497* 40386 CG7611 uuGUUGAUGUA-AAACGUUACGA-AUg :||| ||| | | | ||||| || caUAACAUCAUAUCUACUAUGCUAUAa 2 24 216 242 [dm3:3L:21520980-21521006:+] 0.5688 126 0 -8.13 -1.0117 MIMAT0012208 dme-miR-2497* 40386 CG7611 uuGUUGAUGUA-AAA--CGU--UAC-GAAUg |||| |:|| | | ||| ||| |||| uaCAACAAUAUGUAUGAGCAGCAUGACUUAc 2 24 142 172 [dm3:3L:21520906-21520936:+] 0.7298 124 0 -15.61 -1.1133 MIMAT0000319 dme-miR-263a 40386 CG7611 cacUUAAGAAGGUCACGGUAAUUg |||| |: ||| |||||| auuAAUUACUUAAGU-ACAUUAAu 2 22 180 202 [dm3:3L:21520944-21520966:+] 0.7298 131 6 -10.05 -0.1315 MIMAT0000319 dme-miR-263a 40386 CG7611 cacuuaagaaggucacgGUAAUUg |||||| gcaugacuuacgauuagCAUUAAu 2 8 162 185 [dm3:3L:21520926-21520949:+] 0.7298 120 6 -7.62 -0.2932 MIMAT0000338 dme-miR-277 40386 CG7611 acagcAUGGUCUAUCAC-GUAAAu ||::| | | || ||||| caaauUAUUAAAGAUUGCCAUUUg 2 19 380 403 [dm3:3L:21521144-21521167:+] 0.5688 122 0 -6.67 -1.1824 MIMAT0000345 dme-miR-281 40386 CG7611 uguuucucucguuaagGUACUGu |||||| caauauguaugagcagCAUGACu 2 8 147 169 [dm3:3L:21520911-21520933:+] 0.7298 120 6 -15.05 -0.1439 MIMAT0000348 dme-miR-284 40386 CG7611 guuaacgacCUUAGUUCAACG-ACUGAAgu | || :|| || |||||| caacaauauGUAU-GAGCAGCAUGACUUac 3 21 144 172 [dm3:3L:21520908-21520936:+] 0.7298 129 0 -14.65 -0.1025 MIMAT0000350 dme-miR-34 40386 CG7611 guguugguCGAUUGGUGUGACGGu |||| || |||||| ucgucguuGCUA--CAAACUGCCa 2 17 119 140 [dm3:3L:21520883-21520904:+] 0.6268 125 6 -18.40 -0.1499 MIMAT0000391 dme-miR-305 40386 CG7611 gucUCGUGG--ACU-ACUUCAUGUua ||||:: | | | ||||||| auuAGCAUUAAUUACUUAAGUACAuu 3 21 174 199 [dm3:3L:21520938-21520963:+] 0.7298 134 0 -10.57 -0.2738 MIMAT0005483 dme-miR-1002 40386 CG7611 agcgggAAACAUAGGUGAUGAAUu || | ||: |:|||||| uuacgaUUAGCAUUAAUUACUUAa 2 19 169 192 [dm3:3L:21520933-21520956:+] 0.7298 146 6 -11.63 -0.3518 MIMAT0005504 dme-miR-987 40386 CG7611 guaGUUAGGUCUGAUAAAUGAAau |:||: : |:|| |||||| uuaCGAUUAGCAUUAAUUACUUaa 3 22 169 192 [dm3:3L:21520933-21520956:+] 0.7298 145 0 -11.07 -0.3243 MIMAT0005506 dme-miR-989 40386 CG7611 caaggugaUGCAGUGUAGUGu :| | ||||||: aaggagagGCAUAACAUCAUa 2 14 207 227 [dm3:3L:21520971-21520991:+] 0.5688 129 0 -9.55 -0.1373 MIMAT0005513 dme-miR-994 40386 CG7611 uaGUGCCGA---UGAUAAAGGAAUc :||| :| |:|| || |||| cuUACGAUUAGCAUUAAUUACUUAa 2 21 168 192 [dm3:3L:21520932-21520956:+] 0.7298 123 0 -7.18 -0.1190 MIMAT0005516 dme-miR-252 40386 CG7611 gaggacgcCGUGA-UCAUGAAUc |||:| | |||||| uacgauuaGCAUUAAUUACUUAa 2 15 170 192 [dm3:3L:21520934-21520956:+] 0.7298 125 6 -9.96 -0.3547 MIMAT0005520 dme-miR-1000 40386 CG7611 ugacgacacuguccUGUUAUa |||||| gauacccagcagacACAAUAa 2 8 457 477 [dm3:3L:21521221-21521241:+] 0.6208 120 6 -6.89 -0.2241 MIMAT0005016 dme-miR-1003 40386 CG7611 gaCACUUAUACAUUUACACUCu || |: | |::||||||| caGU-AGCAAAUGGAUGUGAGu 2 21 10 30 [dm3:3L:21520774-21520794:+] 0.6290 150 7 -12.86 -1.0857 MIMAT0005017 dme-miR-1004 40386 CG7611 gaCACUCCCUUCACUACACUCu || || || |||||||| caGU-AGCAAAUGGAUGUGAGu 2 21 10 30 [dm3:3L:21520774-21520794:+] 0.6290 154 7 -14.54 -1.0881

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7611 RAID00511904 dme-miR-985-3p miRNA MIMAT0005502 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID00511963 dme-miR-263a-5p miRNA MIMAT0000319 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID00538117 dme-miR-987-5p miRNA MIMAT0005504 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID00672221 dme-miR-252-5p miRNA MIMAT0005516 CG7611 mRNA 40386 Prediction 0.2381 CG7611 RAID01063099 dme-miR-994-5p miRNA MIMAT0005513 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01645721 dme-miR-989-3p miRNA MIMAT0005506 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01661821 dme-miR-1002-5p miRNA MIMAT0005483 CG7611 mRNA 40386 Prediction 0.2381 CG7611 RAID01720791 dme-miR-281-3p miRNA MIMAT0000345 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01801566 dme-mir-13b-1 miRNA MI0000134 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01850105 dme-miR-11-3p miRNA MIMAT0000116 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01959822 dme-mir-2a-1 miRNA MI0000117 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID01999106 dme-miR-1003-3p miRNA MIMAT0005016 CG7611 mRNA 40386 Prediction 0.2202 CG7611 RAID02278986 dme-miR-1004-3p miRNA MIMAT0005017 CG7611 mRNA 40386 Prediction 0.2202 CG7611 RAID02564758 dme-miR-284-3p miRNA MIMAT0000348 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID02757983 dme-miR-306-5p miRNA MIMAT0000393 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID03570337 dme-miR-34-5p miRNA MIMAT0000350 CG7611 mRNA 40386 Prediction 0.2455 CG7611 RAID03599820 dme-miR-277-3p miRNA MIMAT0000338 CG7611 mRNA 40386 Prediction 0.1828 CG7611 RAID03721490 dme-miR-1000-5p miRNA MIMAT0005520 CG7611 mRNA 40386 Prediction 0.2202 CG7611 RAID04061343 dme-miR-305-5p miRNA MIMAT0000391 CG7611 mRNA 40386 Prediction 0.1828