DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 40555 CG14646 uggucaUGGACUACAUUAUGAGu ||:| | |||||||: cuuaucACUU--UUUAAUACUUu 2 18 141 161 [dm3:3R:217570-217590:+] 0.5217 134 0 -8.01 -0.1430 MIMAT0000330 dme-miR-184* 40555 CG14646 gccccgcuCUCUUACUAUUCc | | |||||||| auauacauGUGCAUGAUAAGu 2 14 358 378 [dm3:3R:217787-217807:+] 0.5383 149 7 -8.61 -0.6276 MIMAT0000343 dme-miR-280 40555 CG14646 auaguaaAGUAUACGUUGCAUUUAUGu | ||| |:||:| |||||| augugcaUGAUAAGUAAUGGAAAUACa 2 21 364 390 [dm3:3R:217793-217819:+] 0.5383 144 6 -16.39 -0.3846 MIMAT0000364 dme-miR-289 40555 CG14646 ucAGCGUCCGAGGUGAAUUUAUAAAu || :| || : || ||||||| aaUC-UAAGCAAUCCU--AAUAUUUu 2 25 165 187 [dm3:3R:217594-217616:+] 0.5217 143 7 -8.73 -1.1405 MIMAT0005509 dme-miR-991 40555 CG14646 ugaAAGGU-UUGAUG-UUGAA-AUu || :| |:|||: ||||| || caaUUAUAUAGCUAUAAACUUAUAa 2 20 95 119 [dm3:3R:217524-217548:+] 0.5217 121 0 -7.96 -1.2701 MIMAT0005509 dme-miR-991 40555 CG14646 ugaaagguuugauguUGAAAUu |||||| uuaucacuuuuuaauACUUUAa 2 8 142 163 [dm3:3R:217571-217592:+] 0.5217 120 6 -10.93 -0.2614 MIMAT0005026 dme-miR-1013 40555 CG14646 gcUCAAG-CCGUA-UGAAAAua ||| | :|| |||||| uuAGUGCACUUAUCACUUUUua 3 19 133 154 [dm3:3R:217562-217583:+] 0.5217 124 0 -5.40 -0.1433 MIMAT0011784 dme-miR-2279* 40555 CG14646 uuaaaGUGUGUGUCUAUAAAuu || |: | |||||| cuaagCA-AUCCUAAUAUUUuu 3 18 168 188 [dm3:3R:217597-217617:+] 0.5217 123 0 -3.06 -0.1599 MIMAT0011788 dme-miR-2281* 40555 CG14646 aacGUAGACGUCGACGU-CUAUUa :|| | || |||| ||||| auuUAUAUACAUGUGCAUGAUAAg 2 21 354 377 [dm3:3R:217783-217806:+] 0.5383 128 0 -11.60 -0.5290 MIMAT0011791 dme-miR-2283 40555 CG14646 uaacagCAUAAGUACUAUAAAAg | | || | ||||||| aucuaaGCAAUCCUAAUAUUUUu 2 18 166 188 [dm3:3R:217595-217617:+] 0.5217 153 7 -3.04 -1.2048 MIMAT0011791 dme-miR-2283 40555 CG14646 uaaCAGCAUAAGU--AC--UA-UAAAAg ||| ||||:| || || ||||| uugGUCUUAUUUAAGUGUAAUCAUUUUc 2 21 51 78 [dm3:3R:217480-217507:+] 0.5217 126 0 -9.31 -1.1234 MIMAT0012202 dme-miR-2494* 40555 CG14646 aaggGUUAGACCACGUGAAUg :||| | ||||||||| auagUAAU-UAGUGCACUUAu 2 18 126 145 [dm3:3R:217555-217574:+] 0.5217 159 7 -15.44 -0.9745 MIMAT0012216 dme-miR-2501 40555 CG14646 aaucggguccgUGAGGUUUGAAUg :|| :||||||| acaauuauauaGCUAUAAACUUAu 2 14 94 117 [dm3:3R:217523-217546:+] 0.5217 149 7 -10.95 -1.2043 MIMAT0000334 dme-miR-92a 40555 CG14646 uauccggcccuguUCACGUUAc |||||||| auaggaaaccuguAGUGCAAUa 2 10 266 287 [dm3:3R:217695-217716:+] 0.4689 145 7 -15.47 -0.8447 MIMAT0000335 dme-miR-219 40555 CG14646 guucuuaacgcaaaccUGUUAGu |||||| acuuuuuaauacuuuaACAAUCu 2 8 147 169 [dm3:3R:217576-217598:+] 0.5217 120 6 -5.16 -0.1957 MIMAT0000347 dme-miR-283 40555 CG14646 ucuuaauggucgacUAUAAAu |||||| ucuaagcaauccuaAUAUUUu 2 8 167 187 [dm3:3R:217596-217616:+] 0.5217 120 6 -3.48 -0.1642 MIMAT0000351 dme-miR-124 40555 CG14646 gaaccguaaguggcgcACGGAAu |||||| guucauaugagaaauaUGCCUUa 2 8 232 254 [dm3:3R:217661-217683:+] 0.5217 120 6 -12.16 -0.1271 MIMAT0000358 dme-miR-92b 40555 CG14646 cguccggcccugAUCACGUUAa ||||||||| auaggaaaccugUAGUGCAAUa 2 11 266 287 [dm3:3R:217695-217716:+] 0.4689 150 7 -16.47 -0.8447 MIMAT0000390 dme-miR-304 40555 CG14646 gaguguAAAUGUU--UAA-CUCUAAu ||||::| :|| |||||| ------UUUAUGACUGUUAGAGAUUa 2 18 1 20 [dm3:3R:217430-217449:+] 0.5217 124 6 -8.49 -0.9941 MIMAT0000391 dme-miR-305 40555 CG14646 gucucGUGGACU-ACUUCAUGUUa :|::| | | |||||||| auuuuUAUUUUACUUAAGUACAAu 2 19 183 206 [dm3:3R:217612-217635:+] 0.5217 153 7 -11.91 -1.1807 MIMAT0000391 dme-miR-305 40555 CG14646 gucUCGUGGACUACUUCAUGUUa | :|| | || |||||| uucAAUACAGUAAGACGUACAAu 2 21 76 98 [dm3:3R:217505-217527:+] 0.5217 124 6 -11.12 -0.2092 MIMAT0000402 dme-miR-310 40555 CG14646 uuuccggcccuuCA-CACGUUAu || ||||||| cauaggaaaccuGUAGUGCAAUa 2 11 265 287 [dm3:3R:217694-217716:+] 0.4689 141 7 -14.87 -0.8447 MIMAT0000403 dme-miR-311 40555 CG14646 aguccggccACUUACACGUUAu || | ||||||| uaggaaaccUGUA-GUGCAAUa 2 14 267 287 [dm3:3R:217696-217716:+] 0.4689 143 7 -15.03 -0.8208 MIMAT0000404 dme-miR-312 40555 CG14646 agUCCGGCAGAGUUCACGUUAu ||| || |||||||| auAGGAAACCUGUAGUGCAAUa 2 21 266 287 [dm3:3R:217695-217716:+] 0.4689 152 7 -19.50 -0.8412 MIMAT0000405 dme-miR-313 40555 CG14646 agcccgacacuuuUCACGUUAu |||||||| auaggaaaccuguAGUGCAAUa 2 10 266 287 [dm3:3R:217695-217716:+] 0.4689 145 7 -15.89 -0.8447 MIMAT0000409 dme-miR-317 40555 CG14646 ugaccuaugguggucgaCACAAGu |||||| aagcauagacagaaagaGUGUUCa 2 8 213 236 [dm3:3R:217642-217665:+] 0.5217 120 6 -16.83 -0.1008 MIMAT0005467 dme-miR-190 40555 CG14646 guugGUUC-UUAUAGUU-UGUAUAGa :||| |||: || ||||||: augaUAAGUAAUGGAAAUACAUAUUa 2 21 370 395 [dm3:3R:217799-217824:+] 0.5383 142 0 -9.90 -0.2442 MIMAT0005474 dme-miR-960 40555 CG14646 cgAUACGUUAGACCUUAUGAGu ||| || |:| ||||||: cuUAU-CACUUUUUAAUACUUu 2 21 141 161 [dm3:3R:217570-217590:+] 0.5217 142 0 -7.84 -0.1416 MIMAT0005483 dme-miR-1002 40555 CG14646 agcgggAAACAUAGGUGAUGAAUu ||| |||: :|||||| cuaauaUUUUUAUU--UUACUUAa 2 19 178 199 [dm3:3R:217607-217628:+] 0.5217 139 6 -7.50 -0.2281 MIMAT0005504 dme-miR-987 40555 CG14646 guaguuaggucugauaaAUGAAAu |||||| cacuuaucacuuuuuaaUACUUUa 2 8 139 162 [dm3:3R:217568-217591:+] 0.5217 120 6 -7.56 -0.3214 MIMAT0005507 dme-miR-137 40555 CG14646 gaugcacaUAAGAGUUCGUUAu | ||| ||||||| acuuuaacAAUCU-AAGCAAUc 2 15 157 177 [dm3:3R:217586-217606:+] 0.5217 148 7 -8.29 -1.0809 MIMAT0005516 dme-miR-252 40555 CG14646 gaggacgccgugaucAUGAAUc |||||| cuaauauuuuuauuuUACUUAa 2 8 178 199 [dm3:3R:217607-217628:+] 0.5217 120 6 -3.69 -0.2602

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG14646 RAID00238708 dme-miR-190-5p miRNA MIMAT0005467 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID00319951 dme-miR-124-3p miRNA MIMAT0000351 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID00610813 dme-miR-317-3p miRNA MIMAT0000409 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01201956 dme-miR-1002-5p miRNA MIMAT0005483 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01484582 dme-miR-219-5p miRNA MIMAT0000335 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01525562 dme-miR-304-5p miRNA MIMAT0000390 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01555613 dme-miR-310-3p miRNA MIMAT0000402 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01926975 dme-miR-137-3p miRNA MIMAT0005507 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID01980117 dme-miR-305-5p miRNA MIMAT0000391 CG14646 mRNA 40555 Prediction 0.2202 CG14646 RAID02000000 dme-miR-311-3p miRNA MIMAT0000403 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID02086269 dme-miR-987-5p miRNA MIMAT0005504 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID02432973 dme-miR-312-3p miRNA MIMAT0000404 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID02519116 dme-miR-92b-3p miRNA MIMAT0000358 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID02866401 dme-miR-313-3p miRNA MIMAT0000405 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID02973289 dme-miR-283-5p miRNA MIMAT0000347 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID03404609 dme-miR-92a-3p miRNA MIMAT0000334 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID03784400 dme-miR-252-5p miRNA MIMAT0005516 CG14646 mRNA 40555 Prediction 0.1828 CG14646 RAID03930256 dme-miR-960-5p miRNA MIMAT0005474 CG14646 mRNA 40555 Prediction 0.1828