| DNA & RNA Element - microRNA |
| Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
| MIMAT0000364 | dme-miR-289 | 40948 | CG10435 | ucagcguCCGAGGUGAAU---UUAUAAAu | | |||| || | |||||| | caaagauGACUCCUCUAAACGUAUAUUUa | 2 | 20 | 80 | 108 | [dm3:3R:3836723-3836751:-] | 0.5624 | 122 | 6 | -12.63 | -0.2366 |
| MIMAT0005481 | dme-miR-966 | 40948 | CG10435 | gguGUGUCGGGUGUU-GGGUGu | || | :||:||| ||||| | gccCAAACUCCGCAAUCCCACc | 2 | 19 | 46 | 67 | [dm3:3R:3836764-3836785:-] | 0.5624 | 130 | 0 | -24.14 | -0.5784 |
| MIMAT0005521 | dme-miR-1001 | 40948 | CG10435 | acuaggaacCCUCAAAUGGGu | || ||||||| | uguacggccGGCUUUUACCCc | 2 | 13 | 22 | 42 | [dm3:3R:3836789-3836809:-] | 0.5624 | 144 | 7 | -11.65 | -0.2432 |
| MIMAT0011784 | dme-miR-2279* | 40948 | CG10435 | uuaaAGUGUGUGUCUAUAAAUu | || :| ||: ||||||| | cuccUC-UAAACGUAUAUUUAa | 2 | 19 | 89 | 109 | [dm3:3R:3836722-3836742:-] | 0.5624 | 152 | 7 | -7.83 | -1.2646 |
| MIMAT0011788 | dme-miR-2281* | 40948 | CG10435 | aaCGUAGACGUCGACGUC-UAUUa | | ||| |||| |||| |||| | caGAAUCCUCAGCAGCAGAAUAAa | 2 | 22 | 163 | 186 | [dm3:3R:3836645-3836668:-] | 0.5624 | 137 | 0 | -14.79 | -1.0037 |
| MIMAT0011791 | dme-miR-2283 | 40948 | CG10435 | uaacAGCAUAAGUACUAUAAAag | || || |:| |||||| | cuccUC-UAAACGU-AUAUUUaa | 3 | 20 | 89 | 109 | [dm3:3R:3836722-3836742:-] | 0.5624 | 127 | 0 | -3.77 | -0.2718 |
| MIMAT0012214 | dme-miR-2500* | 40948 | CG10435 | ccaUAACAUAUACAC-ACAAGGAAUg | :|| | || | | | ||||||: | aaaGUUAU-UAAGAGAUAUUCCUUGc | 2 | 23 | 116 | 140 | [dm3:3R:3836691-3836715:-] | 0.5624 | 135 | 0 | -9.82 | -0.1390 |
| MIMAT0000110 | dme-miR-5 | 40948 | CG10435 | guAUAGUGUUGCUAGCAAGGAAa | |||:| |: ||| |||||| | guUAUUA-AGAGAU-AUUCCUUg | 2 | 22 | 119 | 139 | [dm3:3R:3836692-3836712:-] | 0.5624 | 129 | 6 | -10.27 | -0.1026 |
| MIMAT0000339 | dme-miR-278 | 40948 | CG10435 | uuugccuGCUUUCAGGGUGGcu | || || ||||||| | caaacucCGCAA-UCCCACCcc | 3 | 16 | 49 | 69 | [dm3:3R:3836762-3836782:-] | 0.5624 | 133 | 0 | -15.50 | -0.1001 |
| MIMAT0000347 | dme-miR-283 | 40948 | CG10435 | ucUUAAUGGUCGACUAUAAau | |:|||::| |||||| | aaAGUUAUUAAGAGAUAUUcc | 3 | 20 | 116 | 136 | [dm3:3R:3836695-3836715:-] | 0.5624 | 139 | 0 | -8.57 | -0.1081 |
| MIMAT0000347 | dme-miR-283 | 40948 | CG10435 | ucuuaauggucgacUAUAAAu | |||||| | acuccucuaaacguAUAUUUa | 2 | 8 | 88 | 108 | [dm3:3R:3836723-3836743:-] | 0.5624 | 120 | 6 | -3.59 | -0.2431 |
| MIMAT0005513 | dme-miR-994 | 40948 | CG10435 | uagugccgaugaUA-AAGGAAUc | || ||||||: | aguuauuaagagAUAUUCCUUGc | 2 | 11 | 118 | 140 | [dm3:3R:3836691-3836713:-] | 0.5624 | 125 | 0 | -9.42 | -0.1418 |