DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41074 CG11975 auaGUAA--AGUAUACGU-UG--CAUUUAUGu :||| |:||| ||| :| |||||| caaUAUUACUUAUAAGCAUGCUUUAAAAUACg 2 25 73 104 [dm3:3R:4820428-4820459:+] 0.5638 125 6 -11.05 -0.2134 MIMAT0000364 dme-miR-289 41074 CG11975 ucagcgUCCGAGGUGAAUUUAUAAau | |: ::| | |||||| auggaaAUGUGUUA-UACAAUAUUac 3 21 57 81 [dm3:3R:4820412-4820436:+] 0.5638 122 0 -4.41 -0.1155 MIMAT0005482 dme-miR-967 41074 CG11975 gcgaagaggucuccAUAGAGa |||||| ucuauacaauuauaUAUCUCc 2 8 36 56 [dm3:3R:4820391-4820411:+] 0.5638 120 6 -9.42 -0.1874 MIMAT0011791 dme-miR-2283 41074 CG11975 uaACAGC-AUAAGUACUAUAAAAg ||| | |||| | ||||||| auUGUGGAUAUU--UUAUAUUUUa 2 22 149 170 [dm3:3R:4820504-4820525:+] 0.5149 157 7 -9.59 -1.2463 MIMAT0012196 dme-miR-2489 41074 CG11975 ugACGUUUAUGUUGUAUGUUAu || ||||::: :||||||| caUGGAAAUGUGUUAUACAAUa 2 21 56 77 [dm3:3R:4820411-4820432:+] 0.5638 168 7 -15.92 -1.2823 MIMAT0012196 dme-miR-2489 41074 CG11975 ugacguUUAUGUUG-UAUGUUAu :||:|| | ||||||| gccuuuGAUGCAUCUAUACAAUu 2 17 24 46 [dm3:3R:4820379-4820401:+] 0.6119 155 7 -11.97 -1.1635 MIMAT0012208 dme-miR-2497* 41074 CG11975 uuguUGAUGUA-AAACGUUACGAAug |:||| | | || |||||| caauAUUACUUAUAAGC-AUGCUUua 3 22 73 97 [dm3:3R:4820428-4820452:+] 0.5638 134 0 -10.50 -0.2292 MIMAT0012210 dme-miR-2498* 41074 CG11975 guuuuuauucguauuguCGGAAAu |||||| auccgauuguugcgaacGCCUUUg 2 8 7 30 [dm3:3R:4820362-4820385:+] 0.6601 120 6 -15.52 -0.4451 MIMAT0000109 dme-miR-4 41074 CG11975 aguuaccaacagauCGAAAUa |||||| uuacuuauaagcauGCUUUAa 2 8 78 98 [dm3:3R:4820433-4820453:+] 0.5638 120 6 -3.72 -0.3597 MIMAT0000347 dme-miR-283 41074 CG11975 ucuUAAUGGUCGACUAUAAAu || |:: |: ||||||| gacAUGAUU-GUGGAUAUUUu 2 19 143 162 [dm3:3R:4820498-4820517:+] 0.5638 148 7 -5.76 -0.9173 MIMAT0000409 dme-miR-317 41074 CG11975 ugaccUAUGGUGGU--C--GACACAAgu |||:| ||| | |||||| auuauAUAUCUCCAUGGAAAUGUGUUau 3 20 44 71 [dm3:3R:4820399-4820426:+] 0.5638 129 0 -14.16 -0.1178 MIMAT0005463 dme-miR-iab-4as-5p 41074 CG11975 gcCAUAUGGAAGUCAUAUGCAuu | ||: |||:| |||||| aaGCAUG-CUUUAAAAUACGUua 3 22 86 107 [dm3:3R:4820441-4820462:+] 0.5638 139 0 -11.97 -0.2889 MIMAT0005476 dme-miR-962 41074 CG11975 cuGUCGUAGUUAAA--GAGAUGGAAUa || ||| ||| | :| ||||||: uuCA-CAUAAAUGUAGUUAUACCUUGa 2 24 117 142 [dm3:3R:4820472-4820497:+] 0.5638 144 0 -11.68 -0.1065 MIMAT0005477 dme-miR-963 41074 CG11975 cuuUGU-UGGACUAUAA-AUGGAACa ||| | || :|| ||||||| uucACAUAAAUGUAGUUAUACCUUGa 2 22 117 142 [dm3:3R:4820472-4820497:+] 0.5638 151 7 -11.47 -1.2115 MIMAT0005483 dme-miR-1002 41074 CG11975 agcgggaAACAU-AGGUGAUGAAUu || || :|:|||||| aaaugugUUAUACAAUAUUACUUAu 2 18 61 85 [dm3:3R:4820416-4820440:+] 0.5638 132 6 -10.87 -0.1810 MIMAT0005492 dme-miR-976 41074 CG11975 cguAAC-UACUAUU--G--AUUAGGUu ||| | |||| | ||||||| uauUUGAAACAUAAACCGAUAAUCCAa 2 20 169 195 [dm3:3R:4820524-4820550:+] 0.4660 144 7 -11.06 -1.1431 MIMAT0005493 dme-miR-977 41074 CG11975 aaUCUGUUGCACUUAUAGAGu | ||||: | ||||||| cuAUACAAU-UAUAUAUCUCc 2 20 37 56 [dm3:3R:4820392-4820411:+] 0.5638 153 7 -9.96 -1.1525 MIMAT0005504 dme-miR-987 41074 CG11975 guaguuaGGUCUGAUA-AAUGAAau ::| || || |||||| aaaugugUUAUACAAUAUUACUUau 3 18 61 85 [dm3:3R:4820416-4820440:+] 0.5638 132 0 -3.91 -0.1523 MIMAT0005516 dme-miR-252 41074 CG11975 gaggacgccGUGAUCAUGAAUc || || |||||| uguguuauaCAAUAUUACUUAu 2 14 64 85 [dm3:3R:4820419-4820440:+] 0.5638 125 6 -6.02 -0.1879 MIMAT0005520 dme-miR-1000 41074 CG11975 ugacgACACUGUCCUGUUAUa |||| :| |||||| ggaaaUGUGUUA-UACAAUAu 2 17 59 78 [dm3:3R:4820414-4820433:+] 0.5638 122 6 -10.19 -0.1663

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG11975 RAID00552649 dme-miR-252-5p miRNA MIMAT0005516 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID01008053 dme-miR-1000-5p miRNA MIMAT0005520 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID01157454 dme-miR-124-3p miRNA MIMAT0000351 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID01424951 dme-miR-317-3p miRNA MIMAT0000409 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID01615178 dme-miR-962-5p miRNA MIMAT0005476 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID02013523 dme-miR-1002-5p miRNA MIMAT0005483 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID02057480 dme-miR-963-5p miRNA MIMAT0005477 CG11975 mRNA 41074 Prediction 0.2202 CG11975 RAID02083791 dme-miR-iab-8-5p miRNA MIMAT0005463 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID02582785 dme-mir-307a miRNA MI0000418 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID02872745 dme-miR-987-5p miRNA MIMAT0005504 CG11975 mRNA 41074 Prediction 0.1828 CG11975 RAID02988646 dme-miR-976-3p miRNA MIMAT0005492 CG11975 mRNA 41074 Prediction 0.2202 CG11975 RAID03039050 dme-miR-4-3p miRNA MIMAT0000109 CG11975 mRNA 41074 Prediction 0.2381 CG11975 RAID03453426 dme-miR-977-3p miRNA MIMAT0005493 CG11975 mRNA 41074 Prediction 0.2381 CG11975 RAID03761786 dme-miR-283-5p miRNA MIMAT0000347 CG11975 mRNA 41074 Prediction 0.1828