DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 41090 CG11033 uggucAUGGACUACAUUAUGAGu || | | | |||||||: auuuuUA-CGGUUUUAAUACUUu 2 19 268 289 [dm3:3R:4888194-4888215:+] 0.5446 136 0 -8.18 -0.1210 MIMAT0000364 dme-miR-289 41090 CG11033 ucagCGUCC-GAGGUGAAUUUAUAAAu |::|| :|:|| ||||||| uuagGUGGGAAAUCGCUGCAAUAUUUu 2 23 310 336 [dm3:3R:4888236-4888262:+] 0.5565 153 7 -16.00 -0.2684 MIMAT0000364 dme-miR-289 41090 CG11033 ucagcGUCCGAGGUG--AAUUUA-UAAAu || :||:|| || ||| |||| agaaaCAAAUUCUACUAUUUAAUCAUUUc 2 22 351 379 [dm3:3R:4888277-4888305:+] 0.5684 124 0 -9.05 -0.7014 MIMAT0005481 dme-miR-966 41090 CG11033 gguGUGUCGGGUGUU-GGGUGu :||||::| || ||||| ucuUACAGUUCUGAAUCCCACu 2 19 811 832 [dm3:3R:4888737-4888758:+] 0.5684 126 0 -20.13 -0.1845 MIMAT0005509 dme-miR-991 41090 CG11033 ugaaaggUUUGAUG-UUGAAAUu ||: ||| ||||||| aagcugaAAGAUACAAACUUUAc 2 16 447 469 [dm3:3R:4888373-4888395:+] 0.5684 154 7 -9.31 -0.6942 MIMAT0005022 dme-miR-1009 41090 CG11033 gacuuuacaUUGUUAAAAACUCu :|:| ||||||| uguuuuuccGAUACCUUUUGAGa 2 15 211 233 [dm3:3R:4888137-4888159:+] 0.5485 146 7 -9.41 -0.6125 MIMAT0005022 dme-miR-1009 41090 CG11033 gacuuuAC-AUUGU-UAAAAACUCu || ||| | || |||||| uaacguUGCUAAAAUAUAUUUGAGa 2 18 933 957 [dm3:3R:4888859-4888883:+] 0.5735 127 6 -8.38 -0.1253 MIMAT0005026 dme-miR-1013 41090 CG11033 gcUCAAGCCGUAUGAAAAUa :|||: ||||||||| acGGUUU-UAAUACUUUUAu 2 19 274 292 [dm3:3R:4888200-4888218:+] 0.5446 152 7 -14.96 -1.2099 MIMAT0011784 dme-miR-2279* 41090 CG11033 uuaaagUGUGUGUCUAUAAAUu :||:|| ||||||| guacgaGCAUACUUAUAUUUAa 2 17 977 998 [dm3:3R:4888903-4888924:+] 0.5786 156 7 -12.52 -1.1702 MIMAT0011784 dme-miR-2279* 41090 CG11033 uuaaagugugugucuAUAAAUu |||||| agaaacaaauucuacUAUUUAa 2 8 351 372 [dm3:3R:4888277-4888298:+] 0.5684 120 6 -4.13 -0.1016 MIMAT0011789 dme-miR-2281 41090 CG11033 cguuAUGACGUCUAUGUCUau || ||: |||||| uauuUAAUGU-UUUACAGAau 3 18 992 1011 [dm3:3R:4888918-4888937:+] 0.5786 123 0 -7.51 -0.1108 MIMAT0011791 dme-miR-2283 41090 CG11033 uaacagCAUAAGU-AC--UAUAAAAg | | ||: || ||||||| agguggGAAAUCGCUGCAAUAUUUUc 2 18 312 337 [dm3:3R:4888238-4888263:+] 0.5565 143 7 -10.14 -0.4772 MIMAT0012208 dme-miR-2497* 41090 CG11033 uuGUUGAUGUAAAA--CGU-UACG-AAUg ||| ||||| || || |||| ||| gcCAA-UACAUCUUAAUCAUAUGCAUUAa 2 24 22 49 [dm3:3R:4887948-4887975:+] 0.5069 127 0 -8.28 -0.7888 MIMAT0000105 dme-miR-1 41090 CG11033 gagguAUGAAGAAAUGUAAGGu ||| ||||||| | uguuuUACAGAAUUACAUUACa 2 18 999 1020 [dm3:3R:4888925-4888946:+] 0.5786 121 0 -6.71 -0.1567 MIMAT0000347 dme-miR-283 41090 CG11033 ucUUAAUGGUC----GACUAUAAAu || ||| || || |||||| acAAGUACGAGCAUACUUAUAUUUa 2 20 973 997 [dm3:3R:4888899-4888923:+] 0.5786 126 6 -8.26 -0.1585 MIMAT0000348 dme-miR-284 41090 CG11033 guUAACGACC-UUA-GUUCAACGACU-GAAGu | | :||| |:| :|| ||||| |||| ccACUCUUGGCAGUGUAAAGGGCUGAGCUUCg 2 28 407 438 [dm3:3R:4888333-4888364:+] 0.5684 129 0 -20.22 -0.2967 MIMAT0000358 dme-miR-92b 41090 CG11033 cgUCCGGCCCUGAUC-ACGUUAa |||: || | | | |||||| uuAGGUGGGAAAUCGCUGCAAUa 2 21 310 332 [dm3:3R:4888236-4888258:+] 0.5565 128 6 -17.96 -0.8236 MIMAT0000391 dme-miR-305 41090 CG11033 gucuCGUGGACUACUUC-AUGUUa | | |||| ||| ||||| uuccGAAGCUGA--AAGAUACAAa 2 20 442 463 [dm3:3R:4888368-4888389:+] 0.5684 120 0 -9.08 -0.7856 MIMAT0000393 dme-miR-306 41090 CG11033 aacUCUCAGUGAUUCA--UGGACu | ||||: ||||| ||||| cacAUAGUCGAUAAGUCAACCUGc 2 20 851 874 [dm3:3R:4888777-4888800:+] 0.5684 123 0 -17.95 -0.4434 MIMAT0000407 dme-miR-315 41090 CG11033 cgAAAGACUCGUU--GUUA-GUUUu | | |||||| |||| |||| acUGUAAGAGCAAUGCAAUGCAAAa 2 21 690 714 [dm3:3R:4888616-4888640:+] 0.5684 127 0 -14.87 -1.0088 MIMAT0005467 dme-miR-190 41090 CG11033 guUGGUUCUUAUA---GUUUGUAU-AGa ||||: : ||| |: ||||| || guACCAGCGCUAUUGCCGCACAUAGUCg 2 23 833 860 [dm3:3R:4888759-4888786:+] 0.5684 121 0 -10.05 -0.5739 MIMAT0005470 dme-miR-957 41090 CG11033 cggaGUCAAAACCUGCCAAAGu || |||| |||||||: aaucCAUUUUU--ACGGUUUUa 2 19 263 282 [dm3:3R:4888189-4888208:+] 0.5446 143 0 -13.94 -0.2708 MIMAT0005471 dme-miR-958 41090 CG11033 uuucaucuuaucUUCUUAGAGu :|||||||| ccgauaccuuuuGAGAAUCUCa 2 11 218 239 [dm3:3R:4888144-4888165:+] 0.5485 146 7 -12.85 -1.1451 MIMAT0005474 dme-miR-960 41090 CG11033 cgAUACGUUAGACCUUAUGAGu | | |::|:| ||||||: uuUUUACGGUUU-UAAUACUUu 2 21 269 289 [dm3:3R:4888195-4888215:+] 0.5446 134 0 -9.68 -0.1210 MIMAT0005478 dme-miR-964 41090 CG11033 uucaauucgaggggaUAAGAUu |||||| uuaauacuuuuauaaAUUCUAa 2 8 280 301 [dm3:3R:4888206-4888227:+] 0.5446 120 6 -8.75 -0.1753 MIMAT0005478 dme-miR-964 41090 CG11033 uucaauucgaggggaUAAGAUu |||||| gguaaccagaaacaaAUUCUAc 2 8 344 365 [dm3:3R:4888270-4888291:+] 0.5684 120 6 -5.44 -0.1034 MIMAT0005487 dme-miR-971 41090 CG11033 agugacAUUCUUCA--UUGUGGUu || | | | :|||||| uaaucaUAUGCAUUAAGACACCAa 2 17 34 57 [dm3:3R:4887960-4887983:+] 0.5230 127 6 -13.29 -0.1124 MIMAT0005501 dme-miR-927 41090 CG11033 ccauuucgcAUCCUUAAGAUUu || |||||||| uaauacuuuUAUAAAUUCUAAu 2 14 281 302 [dm3:3R:4888207-4888228:+] 0.5446 149 7 -5.66 -1.0561 MIMAT0005504 dme-miR-987 41090 CG11033 guaguuaggucugauaaAUGAAAu |||||| cauuuuuacgguuuuaaUACUUUu 2 8 267 290 [dm3:3R:4888193-4888216:+] 0.5446 120 6 -9.13 -0.1696

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Kdm2 RAID00041453 dme-miR-958-3p miRNA MIMAT0005471 Kdm2 mRNA 41090 Prediction 0.2202 Kdm2 RAID00298040 dme-miR-971-3p miRNA MIMAT0005487 Kdm2 mRNA 41090 Prediction 0.2202 Kdm2 RAID00299423 dme-miR-1-3p miRNA MIMAT0000105 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00346131 dme-miR-306-5p miRNA MIMAT0000393 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00438341 dme-miR-960-5p miRNA MIMAT0005474 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00636352 dme-miR-1009-3p miRNA MIMAT0005022 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00759230 dme-miR-311-3p miRNA MIMAT0000403 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00841655 dme-miR-987-5p miRNA MIMAT0005504 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID00868636 dme-miR-957-3p miRNA MIMAT0005470 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID01117361 dme-miR-964-5p miRNA MIMAT0005478 Kdm2 mRNA 41090 Prediction 0.2202 Kdm2 RAID01128648 dme-miR-92a-3p miRNA MIMAT0000334 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID01516234 dme-miR-1013-3p miRNA MIMAT0005026 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID01616545 dme-miR-310-3p miRNA MIMAT0000402 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID01828098 dme-miR-315-5p miRNA MIMAT0000407 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID01941495 dme-miR-190-5p miRNA MIMAT0005467 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID02074882 dme-miR-92b-3p miRNA MIMAT0000358 Kdm2 mRNA 41090 Prediction 0.2202 Kdm2 RAID02130699 dme-miR-284-3p miRNA MIMAT0000348 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID02154857 dme-miR-985-3p miRNA MIMAT0005502 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID02302351 dme-miR-1007-3p miRNA MIMAT0005020 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID02403107 dme-miR-996-3p miRNA MIMAT0005515 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID02844608 dme-miR-991-3p miRNA MIMAT0005509 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03124761 dme-miR-313-3p miRNA MIMAT0000405 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03185017 dme-miR-279-3p miRNA MIMAT0000341 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03378113 dme-miR-283-5p miRNA MIMAT0000347 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03394118 dme-miR-980-3p miRNA MIMAT0005496 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03714546 dme-miR-927-5p miRNA MIMAT0005501 Kdm2 mRNA 41090 Prediction 0.2202 Kdm2 RAID03755232 dme-miR-33-5p miRNA MIMAT0000342 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03775892 dme-miR-286-3p miRNA MIMAT0000359 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03782333 dme-miR-305-5p miRNA MIMAT0000391 Kdm2 mRNA 41090 Prediction 0.1828 Kdm2 RAID03949603 dme-miR-312-3p miRNA MIMAT0000404 Kdm2 mRNA 41090 Prediction 0.1828