DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 41145 mura ucagcguccgaggugaaUUUAUAAAu |||||||| cauauuuaagcaaagcgAAAUAUUUg 2 10 739 764 [dm3:3R:5364054-5364079:-] 0.5765 145 7 -8.33 -0.6505 MIMAT0000364 dme-miR-289 41145 mura ucagcguccgaggugaauuUAUAAAu |||||| ucuauauuauauagaauacAUAUUUa 2 8 721 746 [dm3:3R:5364072-5364097:-] 0.5765 120 6 -8.75 -0.1665 MIMAT0005481 dme-miR-966 41145 mura ggUGUGUCGGGUGUUGGGUGu ::||: |:: ||||||| uuGUACGAACUG-AACCCACu 2 20 942 961 [dm3:3R:5363857-5363876:-] 0.5498 145 7 -15.28 -0.4976 MIMAT0005488 dme-miR-972 41145 mura cggauuuAUAAGCAUAACAUGu ||| | ||||||| ugcauuuUAUACUAAUUGUACg 2 16 927 948 [dm3:3R:5363870-5363891:-] 0.5498 151 7 -9.25 -0.7340 MIMAT0005489 dme-miR-973 41145 mura uuuuagcuucaagUUGGUGGUUGgu || |||||| uagcaaaagaaaaAAAAACCAACaa 3 13 984 1008 [dm3:3R:5363810-5363834:-] 0.5498 124 0 -10.49 -0.1725 MIMAT0005499 dme-miR-983 41145 mura aguaAUCAAGCU-UUGCAUA-AUa ||||| | |:||||| || acuaUAGUUAAACAGCGUAUAUAu 2 19 359 382 [dm3:3R:5364436-5364459:-] 0.5347 125 0 -11.29 -0.8049 MIMAT0005509 dme-miR-991 41145 mura ugaaaggUUUGAUG-UUGAAAUu ||:| || ||||||: uaaacggAAGCAACUAACUUUGa 2 16 1110 1132 [dm3:3R:5363686-5363708:-] 0.5529 138 0 -9.89 -0.1046 MIMAT0005521 dme-miR-1001 41145 mura acuaggaacccucAAAUGGGu ||||||| acaacguacuauaUUUACCCa 2 9 867 887 [dm3:3R:5363931-5363951:-] 0.5498 140 7 -10.73 -1.2382 MIMAT0005022 dme-miR-1009 41145 mura gacuuuACAUUGUUAAAAACUCu | | || : ||||||| uuguguUUUCAC-GCUUUUGAGu 2 18 775 796 [dm3:3R:5364022-5364043:-] 0.5765 143 7 -10.76 -0.2256 MIMAT0005026 dme-miR-1013 41145 mura gcucaagccGU-AUGAAAAUa || |||||||| auuuacuacCAUUACUUUUAg 2 12 835 855 [dm3:3R:5363963-5363983:-] 0.5498 146 7 -6.97 -1.0548 MIMAT0011784 dme-miR-2279* 41145 mura uuAAAGUGU-GUGUCUAUAAAUu || :|:| |:| ||||||| uaUUAUAUAGAAUACAUAUUUAa 2 21 725 747 [dm3:3R:5364071-5364093:-] 0.5765 155 7 -8.97 -0.9891 MIMAT0011784 dme-miR-2279* 41145 mura uuaaagUGUGUGUCUAUAAAUu ||::|| ||||||| acaacaACGUAC-UAUAUUUAc 2 17 864 884 [dm3:3R:5363934-5363954:-] 0.5498 150 7 -8.67 -0.6600 MIMAT0011791 dme-miR-2283 41145 mura uaacAGCAUAAGUACUAUAAAAg |||||| :|| ||||||| aagaUCGUAUAUAU-AUAUUUUg 2 20 1057 1078 [dm3:3R:5363740-5363761:-] 0.4766 169 7 -11.74 -0.7822 MIMAT0012198 dme-miR-2491 41145 mura ucGUUG-ACGUUUCCGUUGUCGc |:|| | || | |||||| uaCGACUUACACAAAAAACAGCa 2 21 890 912 [dm3:3R:5363906-5363928:-] 0.5498 123 6 -14.46 -0.2409 MIMAT0012206 dme-miR-2496* 41145 mura augcUACCGGAGA-GUGUGUGCGUg || |:: || : |||||||| uugaAUUGUUGCUGUCCACACGCAu 2 21 683 707 [dm3:3R:5364111-5364135:-] 0.5765 155 7 -20.85 -0.2673 MIMAT0012209 dme-miR-2497 41145 mura gacGUUUGUA--ACA----UUUAC-AACa ||||:|| ||| ||||| ||| gaaCAAAUAUAGUGUAUUCAAAUGCUUGg 2 20 539 567 [dm3:3R:5364251-5364279:-] 0.4848 121 0 -10.66 -0.2982 MIMAT0012214 dme-miR-2500* 41145 mura ccauAACAUAUACA-CAC-AAGGA-AUg ||| :||| | || ||||| || aggcUUGCGUAUUUACUGCUUCCUCUAc 2 22 798 825 [dm3:3R:5363993-5364020:-] 0.5632 123 0 -11.52 -0.7605 MIMAT0000114 dme-miR-9a 41145 mura aguauGUCGAUCUAUUGGUUUcu || | ||| ||||||| aaaacCAACAAGAAAACCAAAca 3 19 998 1020 [dm3:3R:5363798-5363820:-] 0.5498 146 0 -9.69 -0.1404 MIMAT0000319 dme-miR-263a 41145 mura caCUUAAGA---AGGUCACGGUAAUug | |||:| |::| | |||||| acGUAUUUUGUAUUUACUACCAUUAcu 3 23 824 850 [dm3:3R:5363968-5363994:-] 0.5498 137 0 -6.74 -0.1106 MIMAT0000332 dme-miR-274 41145 mura uaAUGGGCA-AUCACAGCCAGUGUUUu ||||| | || | | |||||| uuUACCCAUAUA-CGACUUACACAAAa 2 25 880 905 [dm3:3R:5363913-5363938:-] 0.5498 125 6 -13.70 -0.1506 MIMAT0000332 dme-miR-274 41145 mura uaaugggcaaucacagccaGUGUUUu |||||| guauauaagccaagauuugCACAAAa 2 8 442 467 [dm3:3R:5364351-5364376:-] 0.5098 120 6 -12.20 -0.2031 MIMAT0000338 dme-miR-277 41145 mura acagcAUGGUCUAUCACGUAAAu ||: : : | ||||||| auaaaUAUAGUGCAUUGCAUUUu 2 19 912 934 [dm3:3R:5363884-5363906:-] 0.5498 146 7 -11.17 -0.9497 MIMAT0000347 dme-miR-283 41145 mura ucuuaauggucgacUAUAAAu |||||| auuauauagaauacAUAUUUa 2 8 726 746 [dm3:3R:5364072-5364092:-] 0.5765 120 6 -5.91 -0.1650 MIMAT0000362 dme-miR-263b 41145 mura cacuuaagagGGUCACGGUUc :|:||||||| uuuugaggcaUCGGUGCCAAa 2 12 647 667 [dm3:3R:5364151-5364171:-] 0.5427 147 7 -19.05 -0.3930 MIMAT0000392 dme-miR-9c 41145 mura agauGUCGAUCUUAUGGUUUcu || | |||| |||||| aaacCAACAAGAAAACCAAAca 3 19 999 1020 [dm3:3R:5363798-5363819:-] 0.5498 146 0 -9.54 -0.1404 MIMAT0000395 dme-miR-9b 41145 mura guauGUCGAUUUUAGUGGUUUcu || | ||:| |||||| aaacCAAC-AAGAAAACCAAAca 3 20 999 1020 [dm3:3R:5363798-5363819:-] 0.5498 133 0 -6.90 -0.1418 MIMAT0000410 dme-miR-318 41145 mura acuCUA-UUUGUUUCGGGUC-ACu |:| | |||| ||||| || agcGGUCACUCAAAACCCAGAUGg 2 20 569 592 [dm3:3R:5364226-5364249:-] 0.4848 122 0 -16.35 -0.5487 MIMAT0005472 dme-miR-375 41145 mura auugaAUUCG-GUUUGCUUGUUu ||| : :| :||||||| ucaaaUAACUAUAUGCGAACAAa 2 18 523 545 [dm3:3R:5364273-5364295:-] 0.4848 148 7 -13.88 -0.9075 MIMAT0005483 dme-miR-1002 41145 mura agCGGGAAACAUAGGUGAUG--AAUu |: :|||||||::||||| ||| acGUAUUUUGUAUUUACUACCAUUAc 2 23 824 849 [dm3:3R:5363969-5363994:-] 0.5498 134 0 -22.79 -1.0851 MIMAT0005492 dme-miR-976 41145 mura cguAACUACUAUUG---AUUAGGUu | || |||| | ||||||| aacUCGAGGAUAUCCUAUAAUCCAu 2 20 498 522 [dm3:3R:5364296-5364320:-] 0.4848 154 7 -12.12 -0.8947 MIMAT0005497 dme-miR-981 41145 mura acGUCCAAAGCA--GCUGUUGCuu :|| ||| | | |||||| uuUAGUUUUAAUAACAACAACGua 3 21 851 874 [dm3:3R:5363944-5363967:-] 0.5498 131 0 -8.86 -0.1336 MIMAT0005504 dme-miR-987 41145 mura guaguUAGGU-CUGAUAAAUGAAAu ||::| || | ||||||| uuuguAUUUACUACCA-UUACUUUu 2 20 830 853 [dm3:3R:5363965-5363988:-] 0.5498 148 7 -6.87 -0.9851 MIMAT0005507 dme-miR-137 41145 mura gaugcacauaagaGUUCGUUAu :||||||| acuuugaaacauaUAAGCAAUc 2 10 1126 1147 [dm3:3R:5363671-5363692:-] 0.5529 141 7 -8.67 -1.1344 MIMAT0005513 dme-miR-994 41145 mura uaGUGCCGAUGAUAAAGGA-AUc |:: :||||: ||||| || ugCGUAUUUACUGCUUCCUCUAc 2 21 803 825 [dm3:3R:5363993-5364015:-] 0.5632 124 0 -13.81 -0.7605 MIMAT0005016 dme-miR-1003 41145 mura gacACUUAUACAUUUACACUCu | |:| || ||||||| acaUUAGUUCGU--AUGUGAGu 2 20 287 306 [dm3:3R:5364512-5364531:-] 0.5347 144 7 -10.60 -0.6453 MIMAT0005017 dme-miR-1004 41145 mura gacacucccuuCACUACACUCu || ||||||| gacauuaguucGU-AUGUGAGu 2 12 286 306 [dm3:3R:5364512-5364532:-] 0.5347 141 7 -10.12 -0.6528 MIMAT0005027 dme-miR-1014 41145 mura gacgUUUACUU-UUA-CUUAAAa |||| || ||| |||||| aaaaAAAUUAACAAUAGAAUUUc 2 18 464 486 [dm3:3R:5364332-5364354:-] 0.4848 132 6 -3.12 -0.8717

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mura RAID00149818 dme-miR-9c-5p miRNA MIMAT0000392 mura mRNA 41145 Prediction 0.1828 mura RAID00315179 dme-miR-966-5p miRNA MIMAT0005481 mura mRNA 41145 Prediction 0.1828 mura RAID00410115 dme-miR-34-5p miRNA MIMAT0000350 mura mRNA 41145 Prediction 0.2381 mura RAID00413496 dme-miR-1003-3p miRNA MIMAT0005016 mura mRNA 41145 Prediction 0.2202 mura RAID00458627 dme-miR-283-5p miRNA MIMAT0000347 mura mRNA 41145 Prediction 0.1828 mura RAID00576686 dme-miR-972-3p miRNA MIMAT0005488 mura mRNA 41145 Prediction 0.1828 mura RAID00774252 dme-miR-274-5p miRNA MIMAT0000332 mura mRNA 41145 Prediction 0.1828 mura RAID00866904 dme-miR-9a-5p miRNA MIMAT0000114 mura mRNA 41145 Prediction 0.1828 mura RAID00896877 dme-mir-iab-4 miRNA MI0000432 mura mRNA 41145 Prediction 0.1828 mura RAID01441751 dme-miR-1-3p miRNA MIMAT0000105 mura mRNA 41145 Prediction 0.1828 mura RAID01465862 dme-miR-375-3p miRNA MIMAT0005472 mura mRNA 41145 Prediction 0.2202 mura RAID01578540 dme-miR-994-5p miRNA MIMAT0005513 mura mRNA 41145 Prediction 0.1828 mura RAID01676133 dme-miR-1002-5p miRNA MIMAT0005483 mura mRNA 41145 Prediction 0.1828 mura RAID01753399 dme-miR-1009-3p miRNA MIMAT0005022 mura mRNA 41145 Prediction 0.1828 mura RAID01829845 dme-miR-1014-3p miRNA MIMAT0005027 mura mRNA 41145 Prediction 0.1828 mura RAID01976802 dme-miR-987-5p miRNA MIMAT0005504 mura mRNA 41145 Prediction 0.2202 mura RAID02250732 dme-miR-277-3p miRNA MIMAT0000338 mura mRNA 41145 Prediction 0.2455 mura RAID02375930 dme-miR-318-3p miRNA MIMAT0000410 mura mRNA 41145 Prediction 0.1828 mura RAID02654942 dme-miR-1013-3p miRNA MIMAT0005026 mura mRNA 41145 Prediction 0.1828 mura RAID02693409 dme-miR-263b-5p miRNA MIMAT0000362 mura mRNA 41145 Prediction 0.2381 mura RAID02773838 dme-miR-87-3p miRNA MIMAT0000361 mura mRNA 41145 Prediction 0.1828 mura RAID02795283 dme-miR-9b-5p miRNA MIMAT0000395 mura mRNA 41145 Prediction 0.1828 mura RAID03208293 dme-miR-1001-5p miRNA MIMAT0005521 mura mRNA 41145 Prediction 0.1828 mura RAID03449784 dme-miR-263a-5p miRNA MIMAT0000319 mura mRNA 41145 Prediction 0.1828 mura RAID03615195 dme-miR-976-3p miRNA MIMAT0005492 mura mRNA 41145 Prediction 0.2381 mura RAID03621691 dme-miR-1004-3p miRNA MIMAT0005017 mura mRNA 41145 Prediction 0.2202 mura RAID03681689 dme-miR-981-3p miRNA MIMAT0005497 mura mRNA 41145 Prediction 0.2381 mura RAID03769814 dme-miR-954-5p miRNA MIMAT0005465 mura mRNA 41145 Prediction 0.1828 mura RAID04018820 dme-miR-137-3p miRNA MIMAT0005507 mura mRNA 41145 Prediction 0.2381