DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41179 trbd auAGUAAAGUAUACGU-UG--CAUUUAUGu ||||| :| || || :| ||||||: aaUCAUUAUACAUUCAUGCCUAUAAAUAUa 2 26 662 691 [dm3:3R:5531779-5531808:-] 0.6782 147 0 -13.65 -0.4419 MIMAT0000343 dme-miR-280 41179 trbd auaguaaaguauacguUGCAUUUAUgu |: |||||| auaaaaaaaaucacuuAUUUAAAUAaa 3 12 890 916 [dm3:3R:5531554-5531580:-] 0.7550 123 0 -4.39 -0.5270 MIMAT0005465 dme-miR-954 41179 trbd ugUGUGUUGCGUUGUGGGUCu :|||| | |: ||||||| cgGCACAUC-CGUCACCCAGc 2 20 12 31 [dm3:3R:5532439-5532458:-] 0.4325 157 7 -21.57 -0.5440 MIMAT0005482 dme-miR-967 41179 trbd gcgaagaggucuccAUAGAGa |||||| uauaaauggaauuuUAUCUCa 2 8 785 805 [dm3:3R:5531665-5531685:-] 0.7444 120 6 -6.25 -0.8106 MIMAT0005488 dme-miR-972 41179 trbd cggauuuAUAAGCAUAACAUGu ||||| |||||||: ugaauuuUAUUCUUAUUGUAUu 2 16 764 785 [dm3:3R:5531685-5531706:-] 0.7444 151 0 -10.45 -0.4125 MIMAT0005488 dme-miR-972 41179 trbd cgGAUUUAUAAGCAUAACAUGu ||||: | | ||||||:| uuCUAAGAAAGCUUAUUGUGCa 2 21 850 871 [dm3:3R:5531599-5531620:-] 0.7550 148 0 -15.19 -0.1645 MIMAT0005499 dme-miR-983 41179 trbd aguAAUCAAGCUUUGCAUAAUa ||| ||| | :|||||| auuUUA-UUCUUAUUGUAUUAu 2 20 767 787 [dm3:3R:5531683-5531703:-] 0.7444 141 6 -7.84 -0.4600 MIMAT0005499 dme-miR-983 41179 trbd agUAAUCAAGCU--UUGCAUA-AUa | ||| |:|| :|||||| || aaAAUAGAUUGAUCGACGUAUGUAu 2 21 255 279 [dm3:3R:5532191-5532215:-] 0.6442 127 0 -11.52 -0.6638 MIMAT0005500 dme-miR-984 41179 trbd uuUAAGGUUGGCAU--AAAUGGAGu ||| :|| :| | ||||:||| guAUUAUAAAUGGAAUUUUAUCUCa 2 22 781 805 [dm3:3R:5531665-5531689:-] 0.7444 144 0 -12.42 -0.3356 MIMAT0005510 dme-miR-992 41179 trbd gaaUCAUGGUCU-UUGCACAUGa | || || |||||||| uccAUUAAAUGAUUACGUGUACg 2 20 420 442 [dm3:3R:5532028-5532050:-] 0.5495 146 7 -13.80 -0.7890 MIMAT0005022 dme-miR-1009 41179 trbd gacuuuacAUUGU-UAAAAACUCu ||:|| ||||||||| gcgaucguUAGCAGAUUUUUGAGa 2 16 84 107 [dm3:3R:5532363-5532386:-] 0.4765 162 7 -15.72 -0.8024 MIMAT0005026 dme-miR-1013 41179 trbd gcucAAGCCGUAUGAAAAua ||: | |||||| aguuUUUAAAACACUUUUug 3 17 631 650 [dm3:3R:5531820-5531839:-] 0.6782 124 0 -3.92 -0.1099 MIMAT0011784 dme-miR-2279* 41179 trbd uuaaagugugugucuAUAAAUu |||||| auaaaaaaaaucacuUAUUUAa 2 8 890 911 [dm3:3R:5531559-5531580:-] 0.7550 120 6 -6.45 -0.5502 MIMAT0011787 dme-miR-2280* 41179 trbd agucaaUCGAACCUUCAUUUaa ||:|| ||||||| aauaaaAGUUU-UAAGUAAAga 3 17 911 931 [dm3:3R:5531539-5531559:-] 0.7550 134 0 -7.50 -0.4910 MIMAT0011791 dme-miR-2283 41179 trbd uaacAGCAUA-AGUACU-AUAAAAg |: ||| |||| | |||||| ggaaUUUUAUCUCAUUAUUAUUUUu 2 20 792 816 [dm3:3R:5531654-5531678:-] 0.7444 130 6 -4.35 -1.2819 MIMAT0012196 dme-miR-2489 41179 trbd ugacguuuAUGUUGUAUGUUAu ||:|| |||:||| uucaugccUAUAA-AUAUAAUa 2 15 674 694 [dm3:3R:5531776-5531796:-] 0.6782 136 0 -10.84 -0.1562 MIMAT0012196 dme-miR-2489 41179 trbd ugacguuuauguuguAUGUUAu |||||| uguuaguaauguuauUACAAUu 2 8 816 837 [dm3:3R:5531633-5531654:-] 0.7497 120 6 -6.59 -0.4928 MIMAT0012199 dme-miR-2492 41179 trbd aaACUUUCGAGAGCUGUUUUGUa ||| ||:|:| :|||||| auUGAUAGUUUU---UAAAACAc 2 22 625 644 [dm3:3R:5531826-5531845:-] 0.6782 141 6 -12.06 -0.2397 MIMAT0012199 dme-miR-2492 41179 trbd aaacUUUCGAGAGCUGUUUUGUa || |: | || ||||||: ugcaAAUGUACACG-CAAAACGc 2 20 868 889 [dm3:3R:5531581-5531602:-] 0.7550 137 0 -9.32 -0.1394 MIMAT0012202 dme-miR-2494* 41179 trbd aaggguuagaccacGUGAAUg |||||| cgcauaaaaaaaauCACUUAu 2 8 887 907 [dm3:3R:5531563-5531583:-] 0.7550 120 6 -9.87 -0.6776 MIMAT0012206 dme-miR-2496* 41179 trbd augcuaccggagaGUGUGUGCGUg :::||||||| cuuauugugcaaaUGUACACGCAa 2 12 861 884 [dm3:3R:5531586-5531609:-] 0.7550 143 7 -15.62 -1.2646 MIMAT0012209 dme-miR-2497 41179 trbd gacguuuGUAA-CAUUUACAAca ::|| || |||||| uuauuuuUGUUAGU-AAUGUUau 3 16 809 830 [dm3:3R:5531640-5531661:-] 0.7444 124 0 -4.30 -0.3057 MIMAT0012215 dme-miR-2500 41179 trbd gacuccagGUGUGUGUUUUAgg |: | ||||||| gauuuaaaCGGAAACAAAAUga 3 15 930 951 [dm3:3R:5531519-5531540:-] 0.6026 130 0 -6.52 -0.2729 MIMAT0012215 dme-miR-2500 41179 trbd gacuccagGUGUGUGUUUUAGg ||:| | |||||| gcaaaacgCAUAAAAAAAAUCa 2 15 881 902 [dm3:3R:5531568-5531589:-] 0.7550 126 6 -12.69 -0.5622 MIMAT0000105 dme-miR-1 41179 trbd gaGGUAUGAAG-AA-AUGUAAGgu ::||: || || ||||||| uaUUAUGAAUCAUUAUACAUUCau 3 21 655 678 [dm3:3R:5531792-5531815:-] 0.6782 134 0 -10.83 -0.1130 MIMAT0000109 dme-miR-4 41179 trbd aguuaccaacagaUCGAAAUa ||:|||| uuauuuaaauaaaAGUUUUAa 2 9 904 924 [dm3:3R:5531546-5531566:-] 0.7550 124 0 -4.01 -0.1979 MIMAT0000113 dme-miR-8 41179 trbd cugUAGAAAUGGACUGUCAUAAu | :||||:|| || |||| uggAAUUUUAUCU--CAUUAUUa 2 21 791 811 [dm3:3R:5531659-5531679:-] 0.7444 129 0 -9.64 -0.3047 MIMAT0012531 dme-miR-10-3p 41179 trbd uuuggagagaUCUUGGCUUAAAc ||| ||||||| uacgaaaggcAGAUGCGAAUUUa 2 14 439 461 [dm3:3R:5532009-5532031:-] 0.5495 149 7 -8.42 -0.5278 MIMAT0012531 dme-miR-10-3p 41179 trbd uuuggagagaUCUUGGCUUAAAc | || :|||||| ggccaauaacAUAA-UGAAUUUu 2 14 750 771 [dm3:3R:5531699-5531720:-] 0.6886 127 6 -6.64 -0.2925 MIMAT0012531 dme-miR-10-3p 41179 trbd uuuggaGAGAUCUUGGCUUAAAc :| || ||: |||||| auuguaUUAUA-AAUGGAAUUUu 2 18 778 799 [dm3:3R:5531671-5531692:-] 0.7444 123 6 -4.32 -0.5649 MIMAT0000118 dme-miR-13a 41179 trbd ugAGUAGUUUUACCGACAC-UAu | ||:|::|| |||||| || ucUGAUUAGGAU-GCUGUGCAUa 2 21 33 54 [dm3:3R:5532416-5532437:-] 0.4325 130 0 -19.81 -0.4851 MIMAT0000119 dme-miR-13b 41179 trbd ugagcAGUUUUACCGACAC-UAu |:|::|| |||||| || ucugaUUAGGAU-GCUGUGCAUa 2 18 33 54 [dm3:3R:5532416-5532437:-] 0.4325 123 0 -16.23 -0.4851 MIMAT0000319 dme-miR-263a 41179 trbd cacuuaagaagGUCACGGUAAUUg || | ||||||| cacaugugaaaCAAU-CCAUUAAa 2 14 406 428 [dm3:3R:5532042-5532064:-] 0.5495 143 7 -11.10 -1.1039 MIMAT0000334 dme-miR-92a 41179 trbd uauccggcccuguuCACGUUac |||||| uaagaaagcuuauuGUGCAAau 3 9 853 874 [dm3:3R:5531596-5531617:-] 0.7550 120 0 -7.03 -0.1424 MIMAT0000348 dme-miR-284 41179 trbd guUAACGACCUUAGU-UCAACGACUGAAGu :|| :| |||:| || :| ||||| auGUUAUUACAAUUAUUAUUAUUAACUUCu 2 28 824 853 [dm3:3R:5531617-5531646:-] 0.7497 130 0 -7.89 -0.1151 MIMAT0000355 dme-miR-210 41179 trbd aucggcgacagUGUGCGUGUu | |||||:| auguacacgcaAAACGCAUAa 2 11 873 893 [dm3:3R:5531577-5531597:-] 0.7550 126 0 -14.79 -0.2227 MIMAT0000358 dme-miR-92b 41179 trbd cguccggcccugAUCACGUUaa | |||||| uaagaaagcuuaUUGUGCAAau 3 11 853 874 [dm3:3R:5531596-5531617:-] 0.7550 122 0 -8.01 -0.1424 MIMAT0000399 dme-miR-308 41179 trbd gagugUCAUAUUAGGACAC-UAa | || :|| ||||| || uucugAUUAGGAUGCUGUGCAUa 2 18 32 54 [dm3:3R:5532416-5532438:-] 0.4325 121 0 -10.48 -0.4750 MIMAT0000402 dme-miR-310 41179 trbd uuuccggcccuUCACACGUUau | ||||||| uaagaaagcuuAUUGUGCAAau 3 12 853 874 [dm3:3R:5531596-5531617:-] 0.7550 127 0 -8.41 -0.1424 MIMAT0000403 dme-miR-311 41179 trbd agUCCGGCCACUUACACGUUau || | | | ||||||| uaAGAAAGCUUAUUGUGCAAau 3 21 853 874 [dm3:3R:5531596-5531617:-] 0.7550 132 0 -11.31 -0.1396 MIMAT0000404 dme-miR-312 41179 trbd aguccggcaGAGU-UCACGUUau ||:| |||||| cuaagaaagCUUAUUGUGCAAau 3 14 852 874 [dm3:3R:5531596-5531618:-] 0.7550 124 0 -9.93 -0.1383 MIMAT0000405 dme-miR-313 41179 trbd agcccgacacuuuuCACGUUau |||||| uaagaaagcuuauuGUGCAAau 3 9 853 874 [dm3:3R:5531596-5531617:-] 0.7550 120 0 -7.68 -0.1396 MIMAT0005467 dme-miR-190 41179 trbd guUGGUUCUU-AUAGUUUGUAUAga |:| | || ||| ||||||| auAUCUAUAAUUAUAUAACAUAUau 3 23 692 716 [dm3:3R:5531754-5531778:-] 0.6555 145 0 -7.67 -0.1704 MIMAT0005476 dme-miR-962 41179 trbd cuguCGUAGUUAAAGAGAU-GGAAUa |||| :| ||| || ||||| cuguGCAUAGAAUUCAAUAUCCUUAu 2 22 46 71 [dm3:3R:5532399-5532424:-] 0.4745 133 0 -11.72 -0.8490 MIMAT0005478 dme-miR-964 41179 trbd uucaAUUCGAGGGGAUAAGAuu ||| :::|||||| aacaUAAUGAAUUUUAUUCUua 3 19 757 778 [dm3:3R:5531692-5531713:-] 0.6886 126 0 -7.90 -0.5064 MIMAT0005479 dme-miR-932 41179 trbd gacgUUACGUGAUGCCUUAAcu || | :| :|||||| uuaaAACACUUUUUGGAAUUau 3 19 636 657 [dm3:3R:5531813-5531834:-] 0.6782 130 0 -12.68 -0.2652 MIMAT0005479 dme-miR-932 41179 trbd gaCGUUACGUGAUGCCUUAAcu |:| | :| |:|||||| uuGUAUUAUA-AAUGGAAUUuu 3 21 779 799 [dm3:3R:5531671-5531691:-] 0.7444 130 0 -10.47 -0.4976 MIMAT0005485 dme-miR-969 41179 trbd uuuugaacGAAUCACCUUGAg ||| |||||:| uuaaaacaCUUUUUGGAAUUa 2 14 636 656 [dm3:3R:5531814-5531834:-] 0.6782 133 0 -12.11 -0.2131 MIMAT0005485 dme-miR-969 41179 trbd uuuugaacgAAUCACCUUGAg | | |||||:| auuguauuaUAAAUGGAAUUu 2 13 778 798 [dm3:3R:5531672-5531692:-] 0.7444 128 0 -8.62 -0.2540 MIMAT0005486 dme-miR-970 41179 trbd uaucggcgcacacAGAAUAcu |||||| uaaugaauuuuauUCUUAUug 3 9 761 781 [dm3:3R:5531689-5531709:-] 0.7444 120 0 -4.13 -0.3988 MIMAT0005493 dme-miR-977 41179 trbd aaucUGUUGCACUUAUAGAgu |:|| ||||||| gccuAUAAAUAUAAUAUCUau 3 18 679 699 [dm3:3R:5531771-5531791:-] 0.6555 129 0 -6.27 -0.3804 MIMAT0005493 dme-miR-977 41179 trbd aaucuguugcacuuAUAGAGu |||||| uauaaauggaauuuUAUCUCa 2 8 785 805 [dm3:3R:5531665-5531685:-] 0.7444 120 6 -12.05 -0.8034 MIMAT0005501 dme-miR-927 41179 trbd ccauuucgcauccuuAAGAUUu |||||| auuauuauuauuaacUUCUAAg 2 8 835 856 [dm3:3R:5531614-5531635:-] 0.7550 120 6 -4.26 -0.5439 MIMAT0005507 dme-miR-137 41179 trbd gaugcacaUAAGAGUUCGUUau | |: |||||| uguaacuaAAUUGAAAGCAAac 3 15 210 231 [dm3:3R:5532239-5532260:-] 0.6442 122 0 -6.60 -0.1116 MIMAT0005019 dme-miR-1006 41179 trbd gaUACUUAUUCUUUA-GCUUAAAu | ||| :: |:|| ||||||| guACGAAAGGCAGAUGCGAAUUUa 2 22 438 461 [dm3:3R:5532009-5532032:-] 0.5495 160 7 -12.46 -0.5207 MIMAT0005019 dme-miR-1006 41179 trbd gauacUUAUUCUUUAGCUUAAAu ||||| | | :|||||| gggccAAUAACAUAAUGAAUUUu 2 19 749 771 [dm3:3R:5531699-5531721:-] 0.6886 150 6 -5.68 -0.3020 MIMAT0005019 dme-miR-1006 41179 trbd gauACUUAUUCUUUAGCUUAAAu || || | |||| |||||| uauUGUAUUAUAAAUGGAAUUUu 2 21 777 799 [dm3:3R:5531671-5531693:-] 0.7444 144 6 -6.30 -0.5613 MIMAT0005024 dme-miR-1011 41179 trbd gacgcucgcuaaaCUUGGUUAUu |::|||||| acaguugaacaaaGGGCCAAUAa 2 11 736 758 [dm3:3R:5531712-5531734:-] 0.6329 130 6 -12.96 -0.1342 MIMAT0005027 dme-miR-1014 41179 trbd gaCGUUUACU-U-UUACUUAAAa || ||| | | ||||||||| ggGCCAAUAACAUAAUGAAUUUu 2 20 749 771 [dm3:3R:5531699-5531721:-] 0.6886 161 7 -9.48 -1.2816 MIMAT0005027 dme-miR-1014 41179 trbd gacguuUACU-UUUA-CUUAAAa || | |||| |||||| uauuguAUUAUAAAUGGAAUUUu 2 16 777 799 [dm3:3R:5531671-5531693:-] 0.7444 122 6 -9.25 -1.3242

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score trbd RAID00100054 dme-miR-310-3p miRNA MIMAT0000402 trbd mRNA 41179 Prediction 0.1828 trbd RAID00102805 dme-miR-977-3p miRNA MIMAT0005493 trbd mRNA 41179 Prediction 0.2202 trbd RAID00427168 dme-miR-190-5p miRNA MIMAT0005467 trbd mRNA 41179 Prediction 0.1828 trbd RAID00582743 dme-miR-92b-3p miRNA MIMAT0000358 trbd mRNA 41179 Prediction 0.1828 trbd RAID00624404 dme-miR-284-3p miRNA MIMAT0000348 trbd mRNA 41179 Prediction 0.1828 trbd RAID00645513 dme-miR-969-5p miRNA MIMAT0005485 trbd mRNA 41179 Prediction 0.1828 trbd RAID00660301 dme-miR-985-3p miRNA MIMAT0005502 trbd mRNA 41179 Prediction 0.1828 trbd RAID00733412 dme-miR-8-3p miRNA MIMAT0000113 trbd mRNA 41179 Prediction 0.1828 trbd RAID00803102 dme-miR-263a-5p miRNA MIMAT0000319 trbd mRNA 41179 Prediction 0.1828 trbd RAID00868658 dme-miR-967-5p miRNA MIMAT0005482 trbd mRNA 41179 Prediction 0.1828 trbd RAID01090280 dme-miR-954-5p miRNA MIMAT0005465 trbd mRNA 41179 Prediction 0.1828 trbd RAID01155786 dme-miR-13b-3p miRNA MIMAT0000119 trbd mRNA 41179 Prediction 0.1828 trbd RAID01177164 dme-miR-932-5p miRNA MIMAT0005479 trbd mRNA 41179 Prediction 0.1828 trbd RAID01326099 dme-miR-962-5p miRNA MIMAT0005476 trbd mRNA 41179 Prediction 0.1828 trbd RAID01391922 dme-miR-137-3p miRNA MIMAT0005507 trbd mRNA 41179 Prediction 0.1828 trbd RAID01630102 dme-miR-313-3p miRNA MIMAT0000405 trbd mRNA 41179 Prediction 0.1828 trbd RAID01690209 dme-miR-1011-3p miRNA MIMAT0005024 trbd mRNA 41179 Prediction 0.2202 trbd RAID01711924 dme-mir-2a-1 miRNA MI0000117 trbd mRNA 41179 Prediction 0.1828 trbd RAID01806198 dme-miR-4-3p miRNA MIMAT0000109 trbd mRNA 41179 Prediction 0.1828 trbd RAID01854751 dme-miR-10-3p miRNA MIMAT0012531 trbd mRNA 41179 Prediction 0.1828 trbd RAID01897032 dme-miR-980-3p miRNA MIMAT0005496 trbd mRNA 41179 Prediction 0.1828 trbd RAID01994225 dme-miR-13a-3p miRNA MIMAT0000118 trbd mRNA 41179 Prediction 0.1828 trbd RAID02007502 dme-miR-972-3p miRNA MIMAT0005488 trbd mRNA 41179 Prediction 0.1828 trbd RAID02183735 dme-miR-11-3p miRNA MIMAT0000116 trbd mRNA 41179 Prediction 0.1828 trbd RAID02220975 dme-miR-927-5p miRNA MIMAT0005501 trbd mRNA 41179 Prediction 0.1828 trbd RAID02456525 dme-miR-312-3p miRNA MIMAT0000404 trbd mRNA 41179 Prediction 0.1828 trbd RAID02573397 dme-miR-1010-3p miRNA MIMAT0005023 trbd mRNA 41179 Prediction 0.1828 trbd RAID02584412 dme-miR-990-5p miRNA MIMAT0005508 trbd mRNA 41179 Prediction 0.1828 trbd RAID02584458 dme-miR-958-3p miRNA MIMAT0005471 trbd mRNA 41179 Prediction 0.1828 trbd RAID02605471 dme-miR-308-3p miRNA MIMAT0000399 trbd mRNA 41179 Prediction 0.1828 trbd RAID02652297 dme-mir-13b-1 miRNA MI0000134 trbd mRNA 41179 Prediction 0.1828 trbd RAID02854609 dme-miR-992-3p miRNA MIMAT0005510 trbd mRNA 41179 Prediction 0.1828 trbd RAID02875203 dme-miR-1-3p miRNA MIMAT0000105 trbd mRNA 41179 Prediction 0.1828 trbd RAID02912575 dme-miR-375-3p miRNA MIMAT0005472 trbd mRNA 41179 Prediction 0.1828 trbd RAID02919738 dme-miR-306-5p miRNA MIMAT0000393 trbd mRNA 41179 Prediction 0.1828 trbd RAID03172462 dme-miR-1009-3p miRNA MIMAT0005022 trbd mRNA 41179 Prediction 0.1828 trbd RAID03268749 dme-miR-1014-3p miRNA MIMAT0005027 trbd mRNA 41179 Prediction 0.2202 trbd RAID03333311 dme-miR-311-3p miRNA MIMAT0000403 trbd mRNA 41179 Prediction 0.1828 trbd RAID03396145 dme-miR-1006-3p miRNA MIMAT0005019 trbd mRNA 41179 Prediction 0.2202 trbd RAID03655708 dme-miR-92a-3p miRNA MIMAT0000334 trbd mRNA 41179 Prediction 0.1828 trbd RAID03673021 dme-miR-964-5p miRNA MIMAT0005478 trbd mRNA 41179 Prediction 0.1828 trbd RAID03689995 dme-miR-970-3p miRNA MIMAT0005486 trbd mRNA 41179 Prediction 0.1828 trbd RAID03819458 dme-miR-210-3p miRNA MIMAT0000355 trbd mRNA 41179 Prediction 0.1828