DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41268 CG6325 auaGUAAAG---UAUACGUUG---CAUUUAUGu |:|||| |||| ||| |||||| cuaCGUUUCAAGAUAUUAAACAUAAGAAAUACa 2 25 575 607 [dm3:3R:6228763-6228795:-] 0.4053 126 6 -14.24 -0.1311 MIMAT0000363 dme-miR-288 41268 CG6325 guacuuuACUUUAGCUGUACUUu | ||| ||||||| acgcuuuUCAAA--AACAUGAAa 2 17 283 303 [dm3:3R:6229067-6229087:-] 0.5925 141 7 -8.44 -1.0672 MIMAT0000364 dme-miR-289 41268 CG6325 ucagcguccgaggugaaUUUAUAAAu |||||||| uguuauagaaaagcugcAAAUAUUUa 2 10 53 78 [dm3:3R:6229292-6229317:-] 0.4781 145 7 -10.56 -1.0778 MIMAT0000364 dme-miR-289 41268 CG6325 ucagcguccgAGGUGAAUUUAUAAau |: : || |||||| gauucaacuaUUAGAUUUAAUAUUag 3 17 437 462 [dm3:3R:6228908-6228933:-] 0.5925 128 0 -5.22 -0.1357 MIMAT0005509 dme-miR-991 41268 CG6325 ugaAAGGUUUGAUGUUGA-AAUu ||:|:| | ||||| ||| aaaUUUCGA--UUCAACUAUUAg 2 20 430 450 [dm3:3R:6228920-6228940:-] 0.5925 120 0 -10.17 -1.2161 MIMAT0010206 dme-miR-995* 41268 CG6325 gcgUCGAGGGUGUAUUAAGCcc | ||:|: :||||||| gcaAACUUCUUGGUAAUUCGaa 3 20 107 128 [dm3:3R:6229242-6229263:-] 0.4781 139 0 -14.44 -0.1091 MIMAT0005021 dme-miR-1008 41268 CG6325 acauuUGUGUUUUUCG-ACACu || ||::||| |||| gcuucACUGAAGGAGCAUGUGg 2 17 523 544 [dm3:3R:6228826-6228847:-] 0.5925 120 0 -15.06 -0.8237 MIMAT0005022 dme-miR-1009 41268 CG6325 gacUUUACAU-UGU-UAAAAACUcu | | ||| |:| | |||||| cauAUACGUACAUAUACUUUUGAua 3 21 401 425 [dm3:3R:6228945-6228969:-] 0.5925 134 0 -3.14 -0.1236 MIMAT0005026 dme-miR-1013 41268 CG6325 gcucaagccGUAUGAAAAUa :||||||||: auacguacaUAUACUUUUGa 2 12 404 423 [dm3:3R:6228947-6228966:-] 0.5925 135 0 -10.43 -0.2259 MIMAT0011784 dme-miR-2279* 41268 CG6325 uuaaaguguGUGUCUAUAAAUu ::|| ||||||| uagaaaagcUGCAAAUAUUUAa 2 14 58 79 [dm3:3R:6229291-6229312:-] 0.4781 149 7 -6.96 -1.1186 MIMAT0011784 dme-miR-2279* 41268 CG6325 uuaAAGUGUGUGUCUA--UAAAUu ||:||::|| ||| ||||| uaaUUUACGUACCGAUUGAUUUAg 2 20 493 516 [dm3:3R:6228854-6228877:-] 0.5925 123 0 -13.23 -0.9141 MIMAT0012196 dme-miR-2489 41268 CG6325 ugacgUUUAUGUUGUAUGUUAu | ||| :| ||||||| auuaaACAUAAGAAAUACAAUu 2 18 589 610 [dm3:3R:6228760-6228781:-] 0.4241 157 7 -7.80 -0.8568 MIMAT0012199 dme-miR-2492 41268 CG6325 aaacuuUCGAGAGCUGU-UUUGUa ||:||| ||| ||||| uaguucAGUUCUAAACACAAACAa 2 18 208 231 [dm3:3R:6229139-6229162:-] 0.5925 129 0 -12.67 -0.6505 MIMAT0012216 dme-miR-2501 41268 CG6325 aaucGGGUCCGUGAGGU-UUGAAUg :::| |:| ||:| |||||| gucaUUUAAGUAAUCUACAACUUAg 2 21 325 349 [dm3:3R:6229021-6229045:-] 0.5925 128 6 -12.57 -1.0899 MIMAT0000334 dme-miR-92a 41268 CG6325 uauccggcccuguUCACGUUac ||||||| cuauaccuuacuuAGUGCAAcg 3 10 259 280 [dm3:3R:6229090-6229111:-] 0.5925 125 0 -11.68 -0.1172 MIMAT0000347 dme-miR-283 41268 CG6325 ucuUA-AUGGUCGACUAUAAau || |||: :||||||| uacAUAUACU-UUUGAUAUUcg 3 19 409 429 [dm3:3R:6228941-6228961:-] 0.5925 131 0 -8.41 -0.1814 MIMAT0000348 dme-miR-284 41268 CG6325 guuAACGACCUU-AGUUCAACG-ACUGAAGu | |:| || :| | || ||||||| acuUAGUUUUAAGAUACGGAGCUUGACUUCu 2 27 344 374 [dm3:3R:6228996-6229026:-] 0.5925 148 7 -14.89 -0.8336 MIMAT0000354 dme-miR-276b 41268 CG6325 ucucgugcCAUAAUUCAA-GGAu ||||| |||| ||| uguauuuaGUAUUUAGUUACCUa 2 15 239 261 [dm3:3R:6229109-6229131:-] 0.5925 126 0 -13.80 -1.1751 MIMAT0000358 dme-miR-92b 41268 CG6325 cguccggcccuGAUCACGUUaa :|||||||| cuauaccuuacUUAGUGCAAcg 3 12 259 280 [dm3:3R:6229090-6229111:-] 0.5925 131 0 -13.04 -0.1172 MIMAT0000402 dme-miR-310 41268 CG6325 uuuccggcccuucaCACGUUau |||||| cuauaccuuacuuaGUGCAAcg 3 9 259 280 [dm3:3R:6229090-6229111:-] 0.5925 120 0 -7.72 -0.1172 MIMAT0000403 dme-miR-311 41268 CG6325 aguccggccacuuaCACGUUau |||||| cuauaccuuacuuaGUGCAAcg 3 9 259 280 [dm3:3R:6229090-6229111:-] 0.5925 120 0 -7.72 -0.1160 MIMAT0000404 dme-miR-312 41268 CG6325 aguccGGCA-GAGUUCACGUUau || | ||: ||||||| cuauaCCUUACUU-AGUGCAAcg 3 18 259 280 [dm3:3R:6229090-6229111:-] 0.5925 130 0 -12.14 -0.1149 MIMAT0000405 dme-miR-313 41268 CG6325 agcccgacacuuuUCACGUUau ||||||| cuauaccuuacuuAGUGCAAcg 3 10 259 280 [dm3:3R:6229090-6229111:-] 0.5925 125 0 -7.62 -0.1172 MIMAT0005463 dme-miR-iab-4as-5p 41268 CG6325 gccaUAUGGAAGUCAUAUGCAUu ||:| | || |||||||| ccacAUGCAUACA-UAUACGUAc 2 20 390 411 [dm3:3R:6228959-6228980:-] 0.5925 161 7 -11.79 -1.0929 MIMAT0005467 dme-miR-190 41268 CG6325 guugGUUCUUAUA-GUUUGUAUAga || |||| |: |||||| caugCAUACAUAUACGUACAUAUac 3 21 393 417 [dm3:3R:6228953-6228977:-] 0.5925 135 0 -9.13 -0.1052 MIMAT0005476 dme-miR-962 41268 CG6325 cuGUCGUAGUUAAA--GAGAUGGAAUa :||:||: | || || ||||||| uuUAGUAUUUAGUUACCUAUACCUUAc 2 24 243 269 [dm3:3R:6229101-6229127:-] 0.5925 166 7 -15.23 -0.9308 MIMAT0005497 dme-miR-981 41268 CG6325 acguccAAAGCAGC-UGUUGCUu || | | | :|||||| uauaccUUACUUAGUGCAACGAa 2 17 260 282 [dm3:3R:6229088-6229110:-] 0.5925 131 6 -9.97 -0.1149 MIMAT0005503 dme-miR-986 41268 CG6325 agucaguguuGCGAUAAGCUcu :| ||||||| cauauacuuuUGAUAUUCGAaa 3 13 411 432 [dm3:3R:6228938-6228959:-] 0.5925 128 0 -10.55 -0.2566 MIMAT0005503 dme-miR-986 41268 CG6325 agucaguguugCGAUAAGCUcu |: |||||| caaacuucuugGUAAUUCGAaa 3 12 108 129 [dm3:3R:6229241-6229262:-] 0.4781 123 0 -6.63 -0.1317 MIMAT0005504 dme-miR-987 41268 CG6325 guaGU-UAGGUCUGAUAAAUGAAAu || || |: || || |||||| auaCAUAUACGUAC-AUAUACUUUu 2 22 398 421 [dm3:3R:6228949-6228972:-] 0.5925 130 6 -9.20 -0.1036 MIMAT0005507 dme-miR-137 41268 CG6325 gaugcacAUAAGAGUUCGUUAu |||| : |||||| gauuuaaUAUUAGUUAGCAAUa 2 16 450 471 [dm3:3R:6228899-6228920:-] 0.5925 123 6 -9.06 -0.2156 MIMAT0005512 dme-miR-993 41268 CG6325 ucuAUGGACA-UCUCUG-CUCGAAg || :| | ||| || |||||| acuUAGUUUUAAGAUACGGAGCUUg 2 21 344 368 [dm3:3R:6229002-6229026:-] 0.5925 127 6 -12.43 -0.8068 MIMAT0005519 dme-miR-999 41268 CG6325 ucUGUGUCAGAAUGUCAAUUGu |: :| | || |||||:| agAUUUAAUAUU--AGUUAGCa 2 21 449 468 [dm3:3R:6228902-6228921:-] 0.5925 129 0 -11.15 -0.1414

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6325 RAID00406429 dme-miR-iab-8-5p miRNA MIMAT0005463 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID00471582 dme-miR-993-3p miRNA MIMAT0005512 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID00526311 dme-miR-263b-5p miRNA MIMAT0000362 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID00545288 dme-miR-999-3p miRNA MIMAT0005519 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID00834905 dme-miR-283-5p miRNA MIMAT0000347 CG6325 mRNA 41268 Prediction 0.2381 CG6325 RAID01488270 dme-miR-92b-3p miRNA MIMAT0000358 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID01669085 dme-miR-284-3p miRNA MIMAT0000348 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID01697535 dme-miR-962-5p miRNA MIMAT0005476 CG6325 mRNA 41268 Prediction 0.2202 CG6325 RAID01755535 dme-miR-92a-3p miRNA MIMAT0000334 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID01930087 dme-miR-927-5p miRNA MIMAT0005501 CG6325 mRNA 41268 Prediction 0.2202 CG6325 RAID02363415 dme-miR-310-3p miRNA MIMAT0000402 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID02655817 dme-miR-311-3p miRNA MIMAT0000403 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID02786727 dme-miR-137-3p miRNA MIMAT0005507 CG6325 mRNA 41268 Prediction 0.2202 CG6325 RAID02855623 dme-miR-190-5p miRNA MIMAT0005467 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID02929502 dme-miR-312-3p miRNA MIMAT0000404 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03205004 dme-miR-313-3p miRNA MIMAT0000405 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03421943 dme-miR-986-5p miRNA MIMAT0005503 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03550780 dme-miR-276b-3p miRNA MIMAT0000354 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03685671 dme-miR-987-5p miRNA MIMAT0005504 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03695818 dme-miR-985-3p miRNA MIMAT0005502 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID03780283 dme-miR-981-3p miRNA MIMAT0005497 CG6325 mRNA 41268 Prediction 0.2381 CG6325 RAID03788810 dme-miR-14-3p miRNA MIMAT0000120 CG6325 mRNA 41268 Prediction 0.1828 CG6325 RAID04050754 dme-miR-969-5p miRNA MIMAT0005485 CG6325 mRNA 41268 Prediction 0.1828