DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 41420 CG6923 gccccgcucucuUACUAUUCc :||||||| aacaaaauucuuGUGAUAAGa 2 10 290 310 [dm3:3R:7570351-7570371:-] 0.6139 141 7 -7.32 -1.1825 MIMAT0000394 dme-miR-306* 41420 CG6923 cguguccgugucucACUGGGGg ||||||| guauaugauaacuuUGACCCCa 2 9 361 382 [dm3:3R:7570279-7570300:-] 0.4095 140 7 -17.15 -0.8623 MIMAT0005475 dme-miR-961 41420 CG6923 uagagucAAUGACCACUAGUuu || :| |||||| uguuauaUUUUUAAUGAUCAca 3 16 389 410 [dm3:3R:7570251-7570272:-] 0.4095 127 0 -5.33 -0.1094 MIMAT0005481 dme-miR-966 41420 CG6923 gguGUGUCGGGUGUUGGGUGu :| | : : :||||||| ccuUAAAAUGUUUAACCCACc 2 19 110 130 [dm3:3R:7570531-7570551:-] 0.4876 142 7 -13.20 -0.8051 MIMAT0005499 dme-miR-983 41420 CG6923 aguaaucaaGCUUUGCAUA-AUa || ||||||| || uuaacccacCGCAACGUAUGUAa 2 14 121 143 [dm3:3R:7570518-7570540:-] 0.4876 121 0 -9.52 -0.4166 MIMAT0010206 dme-miR-995* 41420 CG6923 gcgUCG-AGGGUGUAUUAAGCCc ||: | ::| :|:|||||| cuaAGUAUAUUAAGUGAUUCGGc 2 20 223 245 [dm3:3R:7570416-7570438:-] 0.5451 138 6 -13.17 -0.2008 MIMAT0011791 dme-miR-2283 41420 CG6923 uaacaGCAUAAGUACUAUAAAAg | |:|| :| ||||||| cccagCUUGUU-GUUAUAUUUUu 2 19 379 400 [dm3:3R:7570261-7570282:-] 0.4095 152 7 -8.02 -0.8158 MIMAT0012215 dme-miR-2500 41420 CG6923 gacuCCAGGUG-UGUGUUUUAGg | |:::: | |||||||: cuacGUUUUGUGAAACAAAAUUc 2 19 277 299 [dm3:3R:7570362-7570384:-] 0.6139 133 0 -10.94 -0.1097 MIMAT0012216 dme-miR-2501 41420 CG6923 aaUCGGGUCCGUGAGGUUUGAAUg | | : || || |:||||||| auAACAUCGG-ACCCUAAACUUAa 2 23 420 442 [dm3:3R:7570219-7570241:-] 0.4095 156 7 -14.74 -0.7225 MIMAT0000106 dme-miR-2a 41420 CG6923 cgagUAGUUUCGACCGACACUAu | |||| :| :|||||| gugaAACAAAAUU-CUUGUGAUa 2 20 286 307 [dm3:3R:7570354-7570375:-] 0.6139 137 6 -12.20 -0.2535 MIMAT0000107 dme-miR-2b 41420 CG6923 cgaggaGUUUCGACCGACACUAu |||| :| :|||||| gugaaaCAAAAUU-CUUGUGAUa 2 18 286 307 [dm3:3R:7570354-7570375:-] 0.6139 135 6 -12.20 -0.2535 MIMAT0000111 dme-miR-6 41420 CG6923 uuUUUCUUGUCGGUGACACUAu ||| || | :| :|||||| ugAAACAAAAUUC-UUGUGAUa 2 21 287 307 [dm3:3R:7570354-7570374:-] 0.6139 142 6 -10.76 -0.2345 MIMAT0012531 dme-miR-10-3p 41420 CG6923 uuUGGAGAGAUCUUGGCUUAAAc | :|||: || |||||| aaAAUUCUUGUGAUAAGAAUUUc 2 22 293 315 [dm3:3R:7570346-7570368:-] 0.6139 125 6 -8.79 -0.1865 MIMAT0000116 dme-miR-11 41420 CG6923 cguUCUUGAGUCUGACACUAc | ||:|| :|||||| aacAAAAUUC---UUGUGAUa 2 19 290 307 [dm3:3R:7570354-7570371:-] 0.6139 130 6 -11.50 -0.2387 MIMAT0000118 dme-miR-13a 41420 CG6923 ugagUAGUUUUACCGACACUAu | |||||| :|||||| gugaAACAAAAUUCUUGUGAUa 2 19 286 307 [dm3:3R:7570354-7570375:-] 0.6139 150 6 -15.49 -0.2491 MIMAT0000119 dme-miR-13b 41420 CG6923 ugagcaGUUUUACCGACACUAu |||||| :|||||| gugaaaCAAAAUUCUUGUGAUa 2 17 286 307 [dm3:3R:7570354-7570375:-] 0.6139 148 6 -15.49 -0.2491 MIMAT0000339 dme-miR-278 41420 CG6923 uuugccugcuuucaGGGUGGCu ||||||| cuuaaaauguuuaaCCCACCGc 2 9 111 132 [dm3:3R:7570529-7570550:-] 0.4876 140 7 -17.07 -0.9126 MIMAT0000391 dme-miR-305 41420 CG6923 gucucguggacuacuuCAUGUUa |||||| aauuuccuauacauauGUACAAa 2 8 250 272 [dm3:3R:7570389-7570411:-] 0.6139 120 6 -7.51 -0.3106 MIMAT0000399 dme-miR-308 41420 CG6923 gagUGUCAUAUUAGGACACUAa ||| | | ||:|||||| gaaACA--AAAUUCUUGUGAUa 2 20 288 307 [dm3:3R:7570354-7570373:-] 0.6139 140 6 -11.74 -0.2581 MIMAT0000411 dme-miR-2c 41420 CG6923 cgggUAGUUUCGACCGACACUAu | |||| :| :|||||| gugaAACAAAAUU-CUUGUGAUa 2 20 286 307 [dm3:3R:7570354-7570375:-] 0.6139 137 6 -12.20 -0.2535 MIMAT0005467 dme-miR-190 41420 CG6923 guUGGUUCUUAUAG--UUUGUAUAga :| || ||| || | |||||| cgGCAAAUAAUUUCCUAUACAUAUgu 3 23 242 267 [dm3:3R:7570394-7570419:-] 0.5795 141 0 -7.77 -0.1148 MIMAT0005476 dme-miR-962 41420 CG6923 cugUCGUAGUUAAAGAGAUGGAAUa | | | || | ||||||| aaaAACCCCUAUAUACAUACCUUAa 2 23 91 115 [dm3:3R:7570546-7570570:-] 0.4876 146 7 -7.33 -1.1827 MIMAT0005477 dme-miR-963 41420 CG6923 cuUUGUUGGACUAUAAAUGGAAca ||| |: ||| |||||| aaAACCCCUAUAUACAUACCUUaa 3 23 92 115 [dm3:3R:7570546-7570569:-] 0.4876 138 0 -11.36 -0.1346 MIMAT0005478 dme-miR-964 41420 CG6923 uuCAAUUCGAG---GGGAUA-AGAUu ||| :|||| ::|||| |||| uuGUUUGGCUCAAUUUCUAUGUCUAa 2 21 201 226 [dm3:3R:7570435-7570460:-] 0.5085 127 0 -16.50 -1.2323 MIMAT0005513 dme-miR-994 41420 CG6923 uaguGCCGAUGA-UAAAGGA-AUc |||| | | ||||||| || gauuCGGCAAAUAAUUUCCUAUAc 2 19 238 261 [dm3:3R:7570400-7570423:-] 0.5795 129 0 -13.41 -1.2357 MIMAT0005019 dme-miR-1006 41420 CG6923 gauacuuauucuuuagCUUAAAu |||||| aaaauucuugugauaaGAAUUUc 2 8 293 315 [dm3:3R:7570346-7570368:-] 0.6139 120 6 -9.96 -0.1848 MIMAT0005027 dme-miR-1014 41420 CG6923 gacguuuacuuuuaCUUAAAa |||||| aauucuugugauaaGAAUUUc 2 8 295 315 [dm3:3R:7570346-7570366:-] 0.6139 120 6 -7.28 -0.1848

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6923 RAID00089498 dme-miR-10-3p miRNA MIMAT0012531 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID00134708 dme-miR-315-5p miRNA MIMAT0000407 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID00154535 dme-miR-305-5p miRNA MIMAT0000391 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID00216337 dme-miR-6-3p miRNA MIMAT0000111 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID00749411 dme-miR-14-3p miRNA MIMAT0000120 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID00891283 dme-miR-2c-3p miRNA MIMAT0000411 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID01145674 dme-miR-375-3p miRNA MIMAT0005472 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID01185506 dme-miR-994-5p miRNA MIMAT0005513 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID01675611 dme-miR-2a-3p miRNA MIMAT0000106 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID01777980 dme-miR-966-5p miRNA MIMAT0005481 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID01796158 dme-miR-308-3p miRNA MIMAT0000399 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID01940569 dme-miR-2b-3p miRNA MIMAT0000107 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID01985360 dme-miR-11-3p miRNA MIMAT0000116 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID02084386 dme-mir-2a-1 miRNA MI0000117 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID02722141 dme-miR-962-5p miRNA MIMAT0005476 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID02885527 dme-miR-1014-3p miRNA MIMAT0005027 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID02963145 dme-miR-1006-3p miRNA MIMAT0005019 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID02987212 dme-miR-963-5p miRNA MIMAT0005477 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID03258227 dme-miR-964-5p miRNA MIMAT0005478 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID03566780 dme-miR-13a-3p miRNA MIMAT0000118 CG6923 mRNA 41420 Prediction 0.2381 CG6923 RAID03826867 dme-miR-13b-3p miRNA MIMAT0000119 CG6923 mRNA 41420 Prediction 0.2202 CG6923 RAID03878697 dme-miR-190-5p miRNA MIMAT0005467 CG6923 mRNA 41420 Prediction 0.1828 CG6923 RAID04017848 dme-miR-278-3p miRNA MIMAT0000339 CG6923 mRNA 41420 Prediction 0.2202