DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000388 dme-miR-303 41816 CG6966 uggucaaaggacacuuUGGAUUu |||||| auccaaaaaccagaauACCUAAa 2 8 604 626 [dm3:3R:10906294-10906316:-] 0.5591 120 6 -15.66 -0.2859 MIMAT0005488 dme-miR-972 41816 CG6966 cggaUUUAUAAGCAUAACAUgu |||||| | |||||| uuggAAAUAUACAAAUUGUAau 3 19 714 735 [dm3:3R:10906185-10906206:-] 0.5591 146 0 -7.69 -0.1305 MIMAT0005494 dme-miR-978 41816 CG6966 gacguuaaaUGC-CGUGACCUGu ||| | ||||||| aggaucgggACGAGGACUGGACg 2 14 6 28 [dm3:3R:10906892-10906914:-] 0.5704 148 7 -23.11 -0.4698 MIMAT0005502 dme-miR-985 41816 CG6966 acgggcugguaaccUUGUAAAc ||||||| uguguucuugcuacAACAUUUu 2 9 439 460 [dm3:3R:10906460-10906481:-] 0.5586 140 7 -8.08 -0.7083 MIMAT0005509 dme-miR-991 41816 CG6966 ugAAAGGUUU----GAUGUUGAAAuu || | ||| :|: |||||| gcUUGCGAAAUGUUUUGAAACUUUcu 3 21 407 432 [dm3:3R:10906488-10906513:-] 0.5586 127 0 -7.17 -0.1046 MIMAT0011784 dme-miR-2279* 41816 CG6966 uuAAAGUGUGUGUC-UAUAA-AUu | |||: |:|| ||||| || cuUAUCAUUAAUAGAAUAUUGUAu 2 21 467 490 [dm3:3R:10906430-10906453:-] 0.5586 123 0 -7.22 -0.8972 MIMAT0012198 dme-miR-2491 41816 CG6966 ucguugaCGUUUCC--GUUGUCGc |||| | ||||||| agaugaaGCAAUCGAUCAACAGCc 2 16 71 94 [dm3:3R:10906826-10906849:-] 0.5704 146 7 -15.67 -0.4075 MIMAT0012199 dme-miR-2492 41816 CG6966 aaACUUUCGAGAGCUGUUUUGUa ||| | | | |||||||| acUGACAACGAU-AACAAAACAg 2 22 301 322 [dm3:3R:10906598-10906619:-] 0.5555 151 7 -9.10 -0.9452 MIMAT0012199 dme-miR-2492 41816 CG6966 aaacuuucgagagcugUUUUGUa |||||| cagaauaccuaaaaaaAAAACAa 2 8 614 636 [dm3:3R:10906284-10906306:-] 0.5591 120 6 -6.05 -0.3058 MIMAT0012204 dme-miR-2495 41816 CG6966 ucAGUCGGGUUAACUUCACGGu |:|| ||| |||||||| ugUUAG--CAAGCGAAGUGCCu 2 21 250 269 [dm3:3R:10906651-10906670:-] 0.5555 157 7 -20.85 -0.1897 MIMAT0012208 dme-miR-2497* 41816 CG6966 uuGUUGAUGUAAAACGUUAC-GAAUg | || ||||||||: ||| |||| ugCUACAACAUUUUGU-AUGACUUAu 2 24 447 471 [dm3:3R:10906449-10906473:-] 0.5586 145 0 -16.49 -1.0123 MIMAT0000116 dme-miR-11 41816 CG6966 cguUCUUGAGU-CUGA--CACUAc | |||||| |||| ||||| uacACAACUCACGACUUAGUGAUg 2 19 661 684 [dm3:3R:10906236-10906259:-] 0.5591 121 0 -21.58 -0.4838 MIMAT0000389 dme-miR-31b 41816 CG6966 gucGAUAAGGCUGUAGAACGGu :|| | :| ||||||: ucuUUAAUAUGUGUUCUUGCUa 2 20 430 451 [dm3:3R:10906469-10906490:-] 0.5586 131 0 -12.41 -0.1155 MIMAT0000396 dme-let-7 41816 CG6966 ugaUAUGUUGG-A-UGAUGG-AGu |||| ||: | |||||| || cuaAUACUACUAUGACUACCGUCu 2 19 123 146 [dm3:3R:10906774-10906797:-] 0.5629 124 0 -14.42 -0.9243 MIMAT0000400 dme-miR-31a 41816 CG6966 agucgAUACGGCUGUAGAACGGu |||| :| ||||||: uuuaaUAUG-UG--UUCUUGCUa 2 19 432 451 [dm3:3R:10906469-10906488:-] 0.5586 125 0 -13.82 -0.1143 MIMAT0000407 dme-miR-315 41816 CG6966 cgaAAGACUCGUUGUUAGUUuu || | |||:|||||| uaaUUAACAACAAUAAUCAA-- 3 20 732 751 [dm3:3R:10906169-10906188:-] 0.5441 139 0 -9.99 -0.1265 MIMAT0000409 dme-miR-317 41816 CG6966 ugaccuAUGGUGGUCGACACAAGu | |: : | ||||||| gaaacuUUCUUUAAUAUGUGUUCu 2 19 423 446 [dm3:3R:10906474-10906497:-] 0.5586 142 7 -15.58 -1.1851 MIMAT0005472 dme-miR-375 41816 CG6966 auugaaUUCGGUUUGCUUGUUu || |||| ||||| accuaaAAAAAAAACAAACAAa 2 17 620 641 [dm3:3R:10906279-10906300:-] 0.5591 124 0 -6.75 -0.1130 MIMAT0005472 dme-miR-375 41816 CG6966 auugaauUCGGUUUGCUU-GUUu || ||| |||| ||| aucaggcAGACAACCGAAGCAAc 2 16 339 361 [dm3:3R:10906559-10906581:-] 0.5555 123 0 -8.16 -0.3500 MIMAT0005497 dme-miR-981 41816 CG6966 acguccaaagcaGCUGUUGCUu :|||||||| aacuacuacaacUGACAACGAu 2 11 291 312 [dm3:3R:10906608-10906629:-] 0.5555 146 7 -13.38 -0.8133 MIMAT0005507 dme-miR-137 41816 CG6966 gaugcacauaagAGUUCGUUAu | ||||||| uugaucacuagaUGAAGCAAUc 2 11 62 83 [dm3:3R:10906837-10906858:-] 0.5704 142 7 -6.69 -0.4548 MIMAT0005520 dme-miR-1000 41816 CG6966 ugacgacacuguccUGUUAUa |||||| aauuguaauuaacaACAAUAa 2 8 727 747 [dm3:3R:10906173-10906193:-] 0.5441 120 6 -6.72 -0.1298 MIMAT0005024 dme-miR-1011 41816 CG6966 gacgcucgcuaaacUUGGUUAUu |:|||||| gauaacaaaacagaAGCCAAUAa 2 10 310 332 [dm3:3R:10906588-10906610:-] 0.5555 129 6 -9.48 -0.1138 MIMAT0005027 dme-miR-1014 41816 CG6966 gacguuuacuuuuACUUAAAa ||||||| gauuugcugucuuUGAAUUUu 2 9 386 406 [dm3:3R:10906514-10906534:-] 0.5586 140 7 -8.50 -0.7764

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6966 RAID00032409 dme-miR-317-3p miRNA MIMAT0000409 CG6966 mRNA 41816 Prediction 0.2381 CG6966 RAID00467729 dme-let-7-5p miRNA MIMAT0000396 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID00519090 dme-miR-978-3p miRNA MIMAT0005494 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID00771043 dme-miR-31b-5p miRNA MIMAT0000389 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID00790909 dme-miR-11-3p miRNA MIMAT0000116 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID00820785 dme-miR-1011-3p miRNA MIMAT0005024 CG6966 mRNA 41816 Prediction 0.2202 CG6966 RAID01478841 dme-miR-284-3p miRNA MIMAT0000348 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID01638776 dme-miR-1014-3p miRNA MIMAT0005027 CG6966 mRNA 41816 Prediction 0.2202 CG6966 RAID01851724 dme-miR-31a-5p miRNA MIMAT0000400 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID02550371 dme-miR-2495-5p miRNA MIMAT0012204 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID02599273 dme-miR-137-3p miRNA MIMAT0005507 CG6966 mRNA 41816 Prediction 0.2202 CG6966 RAID02637248 dme-miR-1000-5p miRNA MIMAT0005520 CG6966 mRNA 41816 Prediction 0.2202 CG6966 RAID02990214 dme-miR-315-5p miRNA MIMAT0000407 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID03500519 dme-miR-985-3p miRNA MIMAT0005502 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID03597265 dme-miR-981-3p miRNA MIMAT0005497 CG6966 mRNA 41816 Prediction 0.2202 CG6966 RAID04002169 dme-miR-976-3p miRNA MIMAT0005492 CG6966 mRNA 41816 Prediction 0.1828 CG6966 RAID04027568 dme-miR-375-3p miRNA MIMAT0005472 CG6966 mRNA 41816 Prediction 0.1828