DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41826 CG6752 auaGUAAAGUAUACGUUGCAUUUAUGu ||||| | || || ||||||| augCAUUUAUUUUGAAA--UAAAUACc 2 25 321 345 [dm3:3R:11016683-11016707:-] 0.3930 165 7 -9.59 -0.9101 MIMAT0000364 dme-miR-289 41826 CG6752 ucagcGUCCGAGGUGAAUUUAUAAAu :| |: ||| ||||||| uauauUAAGUAGCAC---AAUAUUUa 2 22 227 249 [dm3:3R:11016779-11016801:-] 0.5553 141 7 -8.28 -1.0158 MIMAT0000388 dme-miR-303 41826 CG6752 ugGUCAAAG-G---ACACUUUGGAUUu :|||||: | ||| ||||||| uaUAGUUUUACAAAUGU-CAACCUAAg 2 22 369 394 [dm3:3R:11016634-11016659:-] 0.3930 149 7 -16.30 -0.4148 MIMAT0005481 dme-miR-966 41826 CG6752 ggugugucgggUGUUGGGUGu | ||||||| --------ggaAAAACCCACc 2 11 1 13 [dm3:3R:11017015-11017027:-] 0.4949 142 7 -10.46 -0.5045 MIMAT0005502 dme-miR-985 41826 CG6752 acgggcugguaaccuUGUAAAc |||||| gagacuuuuuauaguACAUUUa 2 8 676 697 [dm3:3R:11016331-11016352:-] 0.5605 120 6 -5.53 -0.1641 MIMAT0005509 dme-miR-991 41826 CG6752 ugaaagguUUGAUGUUGAAAUu |::|: ||||||| aauuaaauAGUUGGAACUUUAu 2 15 561 582 [dm3:3R:11016446-11016467:-] 0.4019 150 7 -9.13 -0.6019 MIMAT0005509 dme-miR-991 41826 CG6752 ugaaagguUUGAUGUUGAAAUu | :|| ||||||| ggaacuuuAUUUAAAACUUUAa 2 15 573 594 [dm3:3R:11016434-11016455:-] 0.4019 150 7 -10.89 -1.1491 MIMAT0005022 dme-miR-1009 41826 CG6752 gacUUUACAU-UGUUA--AAAACUcu ||:|| | :|| | |||||| acaAAGUGAAUGCAUUUAUUUUGAaa 3 21 312 337 [dm3:3R:11016691-11016716:-] 0.3930 134 0 -8.59 -0.1105 MIMAT0005026 dme-miR-1013 41826 CG6752 gcucaagccgUAUGAAAAua | |||||| aaauauauagAGACUUUUua 3 11 667 686 [dm3:3R:11016342-11016361:-] 0.5605 122 0 -4.27 -0.1417 MIMAT0011784 dme-miR-2279* 41826 CG6752 uuAAAGUGU-GUGUCUAUAAAUu || ::| |||| ||||||| uaUUAAGUAGCACA-AUAUUUAa 2 21 229 250 [dm3:3R:11016778-11016799:-] 0.5553 153 7 -10.12 -1.1536 MIMAT0011784 dme-miR-2279* 41826 CG6752 uuaaAGUGUGUGUCUAUA-AAUu | || || | |||| ||| auaaUAACUCAGAAAUAUAUUAa 2 19 212 234 [dm3:3R:11016794-11016816:-] 0.5553 122 0 -5.23 -1.1463 MIMAT0011791 dme-miR-2283 41826 CG6752 uaacagcAUAAGU-AC----UAUAAAAg ||||:| || ||||||| gcgcagcUAUUUAGUGAAAUAUAUUUUu 2 17 493 520 [dm3:3R:11016508-11016535:-] 0.4019 146 7 -6.72 -0.6955 MIMAT0011791 dme-miR-2283 41826 CG6752 uaacagCAUAAGUACUAUAAAag ||| || |||||| uauuaaGUA-GCACAAUAUUUaa 3 18 229 250 [dm3:3R:11016778-11016799:-] 0.5553 127 0 -3.49 -0.1344 MIMAT0012200 dme-miR-2493* 41826 CG6752 acCGACACACA-CACACACUCg |:| || | |||||||| uaGUUUAGUUUAUUGUGUGAGc 2 20 702 723 [dm3:3R:11016305-11016326:-] 0.5032 150 7 -15.67 -0.8743 MIMAT0012209 dme-miR-2497 41826 CG6752 gaCGUUUGUAACAUUUA-CAACa | || || | ||||| |||| uuGAAAUCAAU-UAAAUAGUUGg 2 21 553 574 [dm3:3R:11016454-11016475:-] 0.4019 126 0 -7.39 -0.9915 MIMAT0012211 dme-miR-2498 41826 CG6752 uucauucugcccuuACGGUCAAa |||||||| caauauuuaaauuuUGCCAGUUu 2 10 241 263 [dm3:3R:11016765-11016787:-] 0.4583 145 7 -12.21 -1.1785 MIMAT0000109 dme-miR-4 41826 CG6752 aguuaccaacagauCGAAAUa |||||| agucaaacuccuauGCUUUAa 2 8 45 65 [dm3:3R:11016963-11016983:-] 0.5278 120 6 -7.23 -0.1021 MIMAT0000113 dme-miR-8 41826 CG6752 cuguagaAAUGGACUGUCAUAAu |||:: |||||||| caguuggUUAUUACACAGUAUUg 2 17 533 555 [dm3:3R:11016473-11016495:-] 0.4019 156 7 -11.72 -0.6652 MIMAT0000113 dme-miR-8 41826 CG6752 cuGUA--GAAAUGGACUGUC-AUAAu ||| || ||:: :||| |||| aaCAUUGCUAUAUUGCGCAGCUAUUu 2 22 479 504 [dm3:3R:11016524-11016549:-] 0.4019 120 0 -12.09 -0.3182 MIMAT0000334 dme-miR-92a 41826 CG6752 uaUCCGGCCCUGUUCACGUUAc | ||| || ||||||||| auAUGCC--GA-AAGUGCAAUg 2 21 161 179 [dm3:3R:11016849-11016867:-] 0.5553 155 7 -22.53 -0.8462 MIMAT0000338 dme-miR-277 41826 CG6752 acagcaUGGUCUA-UCACGUAAAu || | :| | ||||||| uagaaaACAAAGUGAAUGCAUUUa 2 18 306 329 [dm3:3R:11016699-11016722:-] 0.3930 148 7 -8.82 -1.0566 MIMAT0000339 dme-miR-278 41826 CG6752 uuugccugCUUUCAGGGUGGCu |||| ||||||| -------gGAAAAACCCACCGa 2 15 1 15 [dm3:3R:11017013-11017027:-] 0.4949 154 7 -20.98 -0.6428 MIMAT0000341 dme-miR-279 41826 CG6752 aauuacucacaccUAGAUCAGu |||||||| aaagcccaaccaaAUCUAGUCa 2 10 28 49 [dm3:3R:11016979-11017000:-] 0.5114 145 7 -12.71 -1.1516 MIMAT0000347 dme-miR-283 41826 CG6752 ucuuaauggucgacUAUAAAu |||||| uauuaaguagcacaAUAUUUa 2 8 229 249 [dm3:3R:11016779-11016799:-] 0.5553 120 6 -8.85 -0.1267 MIMAT0000358 dme-miR-92b 41826 CG6752 cgUCCGGCCCUGAUCACGUUAa | ||| || |||||||| auAUGCC--GA-AAGUGCAAUg 2 21 161 179 [dm3:3R:11016849-11016867:-] 0.5553 147 7 -15.69 -0.8462 MIMAT0000359 dme-miR-286 41826 CG6752 ucgugcucacaagccAGAUCAGu ||||||| gaaagcccaaccaaaUCUAGUCa 2 9 27 49 [dm3:3R:11016979-11017001:-] 0.5114 140 7 -14.78 -1.1536 MIMAT0000389 dme-miR-31b 41826 CG6752 gucgauaaggcuguaGAACGGu |||||| uguuugaguuuuaugCUUGCCa 2 8 122 143 [dm3:3R:11016885-11016906:-] 0.5553 120 6 -14.35 -0.2189 MIMAT0000391 dme-miR-305 41826 CG6752 guCUCGUGGACUACUUCAUGUua ||| ||:| | |||||| uaGAG-ACUUUUUAUAGUACAuu 3 22 674 695 [dm3:3R:11016333-11016354:-] 0.5605 135 0 -15.15 -0.1281 MIMAT0000400 dme-miR-31a 41826 CG6752 agucgauacggcuguaGAACGGu |||||| uuguuugaguuuuaugCUUGCCa 2 8 121 143 [dm3:3R:11016885-11016907:-] 0.5553 120 6 -15.72 -0.2189 MIMAT0000402 dme-miR-310 41826 CG6752 uuUCCGGCCCUUCACACGUUAu | ||| ||| ||||||| auAUGCC--GAA-AGUGCAAUg 2 21 161 179 [dm3:3R:11016849-11016867:-] 0.5553 147 7 -15.49 -0.8462 MIMAT0000403 dme-miR-311 41826 CG6752 aguccggccaCUUACACGUUAu ||| ||||||| gugauaugccGAAAGUGCAAUg 2 13 158 179 [dm3:3R:11016849-11016870:-] 0.5553 152 7 -16.16 -0.8497 MIMAT0000404 dme-miR-312 41826 CG6752 aguccgGCAGAGUUCACGUUAu :| | ||||||||| gugauaUGCCGAAAGUGCAAUg 2 17 158 179 [dm3:3R:11016849-11016870:-] 0.5553 152 7 -20.48 -0.8497 MIMAT0000405 dme-miR-313 41826 CG6752 agcccgACACUUUUCACGUUAu || :|||||||||| gugauaUGCCGAAAGUGCAAUg 2 17 158 179 [dm3:3R:11016849-11016870:-] 0.5553 160 7 -16.44 -0.8532 MIMAT0005468 dme-miR-193 41826 CG6752 caacccugaaucaucCGGUCAu |||||| caauauuuaaauuuuGCCAGUu 2 8 241 262 [dm3:3R:11016766-11016787:-] 0.4583 120 6 -9.94 -0.1582 MIMAT0005478 dme-miR-964 41826 CG6752 uucaauucgaggggaUAAGAUu |||||| cuuugaaaaauauucAUUCUAc 2 8 613 634 [dm3:3R:11016394-11016415:-] 0.4812 120 6 -5.04 -0.1187 MIMAT0005483 dme-miR-1002 41826 CG6752 agcgggaaacauagguGAUGAAUu ||||||| auucuacacauaaaauCUACUUAa 2 9 628 651 [dm3:3R:11016377-11016400:-] 0.4812 140 7 -9.74 -1.2440 MIMAT0005484 dme-miR-968 41826 CG6752 guuggGAAAU--UACCUAUGAUGAau ||| | || | |||||| aucuaCUUAACCAUUCA-ACUACUac 3 20 642 666 [dm3:3R:11016362-11016386:-] 0.5605 124 0 -9.89 -0.1886 MIMAT0005484 dme-miR-968 41826 CG6752 guUGGGAAAU-UACCUAUGAUGAAu |::|| | || | |||||| ucAUUCUACACAUAAAAUCUACUUa 2 23 626 650 [dm3:3R:11016378-11016402:-] 0.4812 121 6 -10.79 -0.2031 MIMAT0005485 dme-miR-969 41826 CG6752 uuuUGAACGAAUC-ACCUUGAg | || ||| ||||||| aucAAUUAAAUAGUUGGAACUu 2 19 558 579 [dm3:3R:11016449-11016470:-] 0.4019 149 7 -12.49 -0.9516 MIMAT0005501 dme-miR-927 41826 CG6752 ccAUUUCGCAUCCUUAAGAUuu |:|| || |||||| uuUGAAAAAUAUUCAUUCUAca 3 21 614 635 [dm3:3R:11016393-11016414:-] 0.4812 128 0 -2.52 -0.1108 MIMAT0005515 dme-miR-996 41826 CG6752 ucugcucguacUUUAGAUCAGu |||||||||| aaagcccaaccAAAUCUAGUCa 2 12 28 49 [dm3:3R:11016979-11017000:-] 0.5114 155 7 -15.67 -1.1476 MIMAT0005516 dme-miR-252 41826 CG6752 gaggacgccgugaucAUGAAUc |||||| ucuacacauaaaaucUACUUAa 2 8 630 651 [dm3:3R:11016377-11016398:-] 0.4812 120 6 -4.52 -0.1540 MIMAT0005520 dme-miR-1000 41826 CG6752 ugacgacacuguccUGUUAUa |||||| auauauuaaguagcACAAUAu 2 8 226 246 [dm3:3R:11016782-11016802:-] 0.5553 120 6 -8.03 -0.1187 MIMAT0005020 dme-miR-1007 41826 CG6752 acgUUUGUCAA--UUA--ACUCGAau ||: |||| ||| |||||| gaaAAGAAGUUUAAAUAAUGAGCUau 3 20 179 204 [dm3:3R:11016824-11016849:-] 0.5553 137 0 -9.00 -0.1131

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG6752 RAID00018410 dme-miR-957-3p miRNA MIMAT0005470 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00451497 dme-miR-2a-3p miRNA MIMAT0000106 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00517131 dme-miR-966-5p miRNA MIMAT0005481 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00576391 dme-miR-1002-5p miRNA MIMAT0005483 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID00598986 dme-miR-308-3p miRNA MIMAT0000399 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00667866 dme-miR-283-5p miRNA MIMAT0000347 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00726744 dme-miR-2b-3p miRNA MIMAT0000107 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00795153 dme-miR-11-3p miRNA MIMAT0000116 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID00823180 dme-miR-31b-5p miRNA MIMAT0000389 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID00869779 dme-mir-2a-1 miRNA MI0000117 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID01002856 dme-miR-279-3p miRNA MIMAT0000341 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID01099989 dme-miR-996-3p miRNA MIMAT0005515 CG6752 mRNA 41826 Prediction 0.2381 CG6752 RAID01281826 dme-miR-92b-3p miRNA MIMAT0000358 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID01540881 dme-miR-1007-3p miRNA MIMAT0005020 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID01572776 dme-miR-92a-3p miRNA MIMAT0000334 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID01713343 dme-miR-306-5p miRNA MIMAT0000393 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID01731579 dme-miR-927-5p miRNA MIMAT0005501 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID01778769 dme-miR-991-3p miRNA MIMAT0005509 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID01854140 dme-miR-31a-5p miRNA MIMAT0000400 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID02060811 dme-miR-964-5p miRNA MIMAT0005478 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID02165044 dme-miR-310-3p miRNA MIMAT0000402 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID02337910 dme-miR-13a-3p miRNA MIMAT0000118 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID02466187 dme-miR-311-3p miRNA MIMAT0000403 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID02501707 dme-miR-34-5p miRNA MIMAT0000350 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID02528775 dme-miR-277-3p miRNA MIMAT0000338 CG6752 mRNA 41826 Prediction 0.2381 CG6752 RAID02636572 dme-miR-13b-3p miRNA MIMAT0000119 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID02636602 dme-miR-275-3p miRNA MIMAT0000333 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID02637439 dme-miR-1000-5p miRNA MIMAT0005520 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID02762644 dme-miR-312-3p miRNA MIMAT0000404 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID02827549 dme-miR-278-3p miRNA MIMAT0000339 CG6752 mRNA 41826 Prediction 0.2381 CG6752 RAID02958484 dme-miR-305-5p miRNA MIMAT0000391 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03003075 dme-miR-4-3p miRNA MIMAT0000109 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03007505 dme-miR-313-3p miRNA MIMAT0000405 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03019543 dme-miR-6-3p miRNA MIMAT0000111 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03115747 dme-miR-973-5p miRNA MIMAT0005489 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03130972 dme-miR-193-3p miRNA MIMAT0005468 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03316481 dme-miR-980-3p miRNA MIMAT0005496 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03505558 dme-miR-985-3p miRNA MIMAT0005502 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03559796 dme-miR-968-5p miRNA MIMAT0005484 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03600059 dme-miR-8-3p miRNA MIMAT0000113 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03671681 dme-miR-286-3p miRNA MIMAT0000359 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03687543 dme-miR-252-5p miRNA MIMAT0005516 CG6752 mRNA 41826 Prediction 0.2202 CG6752 RAID03758848 dme-miR-2c-3p miRNA MIMAT0000411 CG6752 mRNA 41826 Prediction 0.1828 CG6752 RAID03859609 dme-miR-969-5p miRNA MIMAT0005485 CG6752 mRNA 41826 Prediction 0.2202