DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 41834 CG12241 ucagcguccgaggugaauuUAUAAAu |||||| aaucuuauaaaguacagacAUAUUUa 2 8 326 351 [dm3:3R:11048003-11048028:+] 0.5848 120 6 -7.64 -0.3368 MIMAT0011784 dme-miR-2279* 41834 CG12241 uuaaagUGUGUGUCUAUAAAUu ::||| | ||||||| uauaaaGUACAGACAUAUUUAu 2 17 331 352 [dm3:3R:11048008-11048029:+] 0.5848 156 7 -8.79 -1.0239 MIMAT0011789 dme-miR-2281 41834 CG12241 cgUUAUGACGUCU-AUGUCUau ||| :| :| | |||||| caAAUCUUAUAAAGUACAGAca 3 20 324 345 [dm3:3R:11048001-11048022:+] 0.5545 134 0 -7.08 -0.3410 MIMAT0012196 dme-miR-2489 41834 CG12241 ugacguUUAUGUUGUAUGU-UAu | ||| |:||||| || auauuuAUUACUAUAUACACAUa 2 17 345 367 [dm3:3R:11048022-11048044:+] 0.5848 124 0 -7.60 -1.2655 MIMAT0000319 dme-miR-263a 41834 CG12241 cacuuaagaAGGUCACGGUAAUUg | || | :|||||| cugucuaaaUGCA-UUUCAUUAAa 2 16 377 399 [dm3:3R:11048054-11048076:+] 0.6151 129 6 -6.43 -0.4312 MIMAT0000333 dme-miR-275 41834 CG12241 gcgcgcgaUGAAGUCCAUGGAcu |: | | |||||| aauuacaaAUGUAACGUACCUuu 3 16 292 314 [dm3:3R:11047969-11047991:+] 0.5545 127 0 -8.17 -0.1026 MIMAT0000334 dme-miR-92a 41834 CG12241 uauccggcccuGUUCACGUUAc :||||||||| ucuuucauuucUAAGUGCAAUc 2 12 82 103 [dm3:3R:11047759-11047780:+] 0.3935 151 7 -11.16 -0.4746 MIMAT0000338 dme-miR-277 41834 CG12241 acagcaUGGUCUA-UCACGUAAAu ||:: | | ||||||| uguuuaACUGUCUAAAUGCAUUUc 2 18 370 393 [dm3:3R:11048047-11048070:+] 0.6151 144 7 -6.96 -1.2447 MIMAT0000347 dme-miR-283 41834 CG12241 ucuuaauggucgacUAUAAAu |||||| uauaaaguacagacAUAUUUa 2 8 331 351 [dm3:3R:11048008-11048028:+] 0.5848 120 6 -8.02 -0.3368 MIMAT0000358 dme-miR-92b 41834 CG12241 cguccggcccuGA-UCACGUUAa || |||||||| uucuuucauuuCUAAGUGCAAUc 2 12 81 103 [dm3:3R:11047758-11047780:+] 0.3935 146 7 -10.65 -0.4746 MIMAT0000365 dme-bantam 41834 CG12241 uuAGUCGAAAGUUUUAC-UAGAGu |:| || || ||||| ||:|| guUUAACUGUCUAAAUGCAUUUCa 2 22 371 394 [dm3:3R:11048048-11048071:+] 0.6151 125 0 -12.31 -0.1535 MIMAT0000391 dme-miR-305 41834 CG12241 gucucgUGGACUACUUCAUGUUa |:|| || |||||||: aaucaaAUCUUAUAAAGUACAGa 2 18 321 343 [dm3:3R:11047998-11048020:+] 0.5545 149 0 -12.62 -0.3146 MIMAT0000393 dme-miR-306 41834 CG12241 aacucucagugAUU-CAUGGAcu ||| |||||| aauuacaaaugUAACGUACCUuu 3 12 292 314 [dm3:3R:11047969-11047991:+] 0.5545 126 0 -8.28 -0.1006 MIMAT0000402 dme-miR-310 41834 CG12241 uuuccggcccuucaCACGUUAu ||||||| ucuuucauuucuaaGUGCAAUc 2 9 82 103 [dm3:3R:11047759-11047780:+] 0.3935 140 7 -8.02 -0.4746 MIMAT0000403 dme-miR-311 41834 CG12241 aguccggccacuUACACGUUAu | ||||||| ucuuucauuucuAAGUGCAAUc 2 11 82 103 [dm3:3R:11047759-11047780:+] 0.3935 142 7 -8.02 -0.4679 MIMAT0000404 dme-miR-312 41834 CG12241 aguccGGCAGAG-UUCACGUUAu :| |:|| ||||||||| uucuuUCAUUUCUAAGUGCAAUc 2 18 81 103 [dm3:3R:11047758-11047780:+] 0.3935 160 7 -14.25 -0.4646 MIMAT0000405 dme-miR-313 41834 CG12241 agcccgacacuuUUCACGUUAu ||||||||| ucuuucauuucuAAGUGCAAUc 2 11 82 103 [dm3:3R:11047759-11047780:+] 0.3935 150 7 -10.22 -0.4646 MIMAT0000407 dme-miR-315 41834 CG12241 cgaaAGACUCGUUGUUAGUUUu |:| | ::| ||||||| uaccUUUAAUUGA-AAUCAAAu 2 19 308 328 [dm3:3R:11047985-11048005:+] 0.5545 148 7 -7.23 -1.1314 MIMAT0005467 dme-miR-190 41834 CG12241 guuGGUUCUUAUA-GUUUGUAUAGa |: | || :| ||:||||||: aauCUUAUAAAGUACAGACAUAUUu 2 22 326 350 [dm3:3R:11048003-11048027:+] 0.5848 144 0 -13.47 -0.1301 MIMAT0005476 dme-miR-962 41834 CG12241 cugUCGUAGUUAAAGAG-AUGGAAua | :| ||| | | |||||| uaaAUUACAAAUGUAACGUACCUUua 3 23 290 315 [dm3:3R:11047967-11047992:+] 0.5545 129 0 -7.73 -0.1464 MIMAT0005477 dme-miR-963 41834 CG12241 cuuUGUUGGACUAUAAAUGGAAca |||| || | |||||| auuACAA-AUGUAACGUACCUUua 3 22 293 315 [dm3:3R:11047970-11047992:+] 0.5545 131 0 -10.29 -0.1508 MIMAT0005483 dme-miR-1002 41834 CG12241 agcGGGA-AACA-UAGGU-GA-UGAAUu |::| |||| :| || || ||||| cuuCUUUGUUGUCGUACACCUAACUUAa 2 22 141 168 [dm3:3R:11047818-11047845:+] 0.5545 122 0 -15.53 -0.6122 MIMAT0005486 dme-miR-970 41834 CG12241 uaucggcgcacacAGAAUAcu |||||| aauugaaaucaaaUCUUAUaa 3 9 315 335 [dm3:3R:11047992-11048012:+] 0.5545 120 0 -3.44 -0.2174 MIMAT0005487 dme-miR-971 41834 CG12241 agugacauucuucauUGUGGUu |||||| uauaaauccuagaccACACCAa 2 8 263 284 [dm3:3R:11047940-11047961:+] 0.5545 120 6 -10.64 -0.1661 MIMAT0005493 dme-miR-977 41834 CG12241 aaucUGUUGCA---CUUAUAGAGu || :||| |||||||| aucaACUGCGUAUCCAAUAUCUCa 2 18 42 65 [dm3:3R:11047719-11047742:+] 0.3706 148 7 -14.47 -0.5226 MIMAT0005504 dme-miR-987 41834 CG12241 guagUUAGGUCUG-AUA---AAUGAAAu |:| ||||| ||| ||||| | auaaAGUACAGACAUAUUUAUUACUAUa 2 21 332 359 [dm3:3R:11048009-11048036:+] 0.5848 130 0 -12.97 -0.1398 MIMAT0005513 dme-miR-994 41834 CG12241 uagugccgAUGAUAAAGGAAUc |:| ||||| ||| ugucuaaaUGC-AUUUCAUUAa 2 15 378 398 [dm3:3R:11048055-11048075:+] 0.6151 120 0 -5.23 -0.1059 MIMAT0005027 dme-miR-1014 41834 CG12241 gacGUUUAC--UUUUACUUAAAa :|| || ||||| |||| guuUAACUGUCUAAAUGCAUUUc 2 19 371 393 [dm3:3R:11048048-11048070:+] 0.6151 125 0 -6.38 -0.1214

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG12241 RAID00064965 dme-miR-962-5p miRNA MIMAT0005476 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID00531678 dme-miR-1002-5p miRNA MIMAT0005483 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID00564983 dme-miR-963-5p miRNA MIMAT0005477 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID00769773 dme-miR-1014-3p miRNA MIMAT0005027 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID00887839 dme-miR-310-3p miRNA MIMAT0000402 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID01306218 dme-miR-311-3p miRNA MIMAT0000403 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID01306616 dme-miR-305-5p miRNA MIMAT0000391 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID01377841 dme-miR-987-5p miRNA MIMAT0005504 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID01771321 dme-miR-312-3p miRNA MIMAT0000404 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID01790541 dme-miR-994-5p miRNA MIMAT0005513 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID01828420 dme-miR-306-5p miRNA MIMAT0000393 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID01861474 dme-miR-92b-3p miRNA MIMAT0000358 CG12241 mRNA 41834 Prediction 0.2381 CG12241 RAID01933197 dme-miR-263a-5p miRNA MIMAT0000319 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID01950369 dme-miR-977-3p miRNA MIMAT0005493 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID02011087 dme-miR-970-3p miRNA MIMAT0005486 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID02047538 dme-miR-315-5p miRNA MIMAT0000407 CG12241 mRNA 41834 Prediction 0.2381 CG12241 RAID02211699 dme-miR-313-3p miRNA MIMAT0000405 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID02264718 dme-miR-283-5p miRNA MIMAT0000347 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID02338267 dme-miR-275-3p miRNA MIMAT0000333 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID02448040 dme-miR-971-3p miRNA MIMAT0005487 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID02456429 dme-bantam-3p miRNA MIMAT0000365 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID02734614 dme-miR-92a-3p miRNA MIMAT0000334 CG12241 mRNA 41834 Prediction 0.2202 CG12241 RAID03116803 dme-miR-252-5p miRNA MIMAT0005516 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID03253921 dme-miR-967-5p miRNA MIMAT0005482 CG12241 mRNA 41834 Prediction 0.1828 CG12241 RAID03359405 dme-miR-277-3p miRNA MIMAT0000338 CG12241 mRNA 41834 Prediction 0.2455 CG12241 RAID03651663 dme-miR-190-5p miRNA MIMAT0005467 CG12241 mRNA 41834 Prediction 0.1828