DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 42509 CG5798 ucAGCGUCCGAGGUGAAUUUAUAAAu |:|:| :|:::| | |||||| uaUUGUA--UUUUGCAAAUAUAUUUu 2 25 312 335 [dm3:3R:16963884-16963907:+] 0.6671 125 6 -8.04 -0.3233 MIMAT0005488 dme-miR-972 42509 CG5798 cggauuUAUAAGCAUAACAUGu ||| |: |||||||: gggacuAUAGUU-UAUUGUAUu 2 17 300 320 [dm3:3R:16963872-16963892:+] 0.5768 138 0 -7.49 -0.1019 MIMAT0005509 dme-miR-991 42509 CG5798 ugAAAGGUUUGAUG-----UUGA-AAUu ||| ||||:||| |||| ||| caUUUACAAAUUACCGCUUAACUGUUAa 2 21 106 133 [dm3:3R:16963678-16963705:+] 0.4885 127 0 -10.10 -1.0156 MIMAT0005521 dme-miR-1001 42509 CG5798 acuaGGAACCCUCAAAUGGGu |:|| || ||||||| uuucCUUUCGGUUUUUACCCc 2 18 14 34 [dm3:3R:16963586-16963606:+] 0.4885 157 7 -16.49 -1.0547 MIMAT0005026 dme-miR-1013 42509 CG5798 gcucaagccGUA-UGAAAAUa :|| :|||||| cucucauauUAUAGCUUUUAa 2 12 61 81 [dm3:3R:16963633-16963653:+] 0.4885 126 6 -4.75 -0.1214 MIMAT0011784 dme-miR-2279* 42509 CG5798 uuAAAGUGUGUGUCUAUAAAuu |||::|| |: |||||| uaUUUUGCAAAU--AUAUUUua 3 21 317 336 [dm3:3R:16963889-16963908:+] 0.6671 137 0 -5.05 -0.4505 MIMAT0011791 dme-miR-2283 42509 CG5798 uaACAGCAUAAG----UACUAUAAAAg | |:|||||: | ||||||| uuUAUUGUAUUUUGCAAAUAUAUUUUa 2 22 310 336 [dm3:3R:16963882-16963908:+] 0.6671 152 7 -8.59 -1.3306 MIMAT0000113 dme-miR-8 42509 CG5798 cuGUAGAAAUG-GA--C-UGUCAUAAu ::||| :| || | |||||||| guUGUCUAGGCUCUUAGAACAGUAUUa 2 22 166 192 [dm3:3R:16963738-16963764:+] 0.4885 146 7 -14.76 -0.7002 MIMAT0000114 dme-miR-9a 42509 CG5798 agUAUGUCGAUCUAUUGGUUUcu |||:| :| | ||||||| aaAUAUA-UUUUAAAACCAAAua 3 22 325 346 [dm3:3R:16963897-16963918:+] 0.7575 139 0 -7.63 -0.7993 MIMAT0000341 dme-miR-279 42509 CG5798 aauuacucacacCUAGAUCAGu |:||||||| uauagcuuuuaaGGUCUAGUCg 2 11 70 91 [dm3:3R:16963642-16963663:+] 0.4885 146 7 -15.72 -0.3216 MIMAT0000347 dme-miR-283 42509 CG5798 ucuuaauggucgacUAUAAAu |||||| uguauuuugcaaauAUAUUUu 2 8 315 335 [dm3:3R:16963887-16963907:+] 0.6671 120 6 -2.80 -0.3233 MIMAT0000352 dme-miR-79 42509 CG5798 uacGAAACCAUUAGAUCGAAAu || | || | ||||||| uuuCUCUCAUAUUAUAGCUUUu 2 20 58 79 [dm3:3R:16963630-16963651:+] 0.4885 155 7 -7.28 -1.0836 MIMAT0000359 dme-miR-286 42509 CG5798 ucGUGCUCACAA-GCCAGAUCAGu :|: : | || ||||||||| auUAUAGCUUUUAAGGUCUAGUCg 2 22 68 91 [dm3:3R:16963640-16963663:+] 0.4885 152 7 -19.10 -0.3189 MIMAT0000392 dme-miR-9c 42509 CG5798 agAUGUCGAUCUUAUGGUUUcu ||:| :| || |||||| aaUAUA-UUUUAAAACCAAAua 3 21 326 346 [dm3:3R:16963898-16963918:+] 0.7575 134 0 -5.77 -0.7993 MIMAT0000395 dme-miR-9b 42509 CG5798 guAUGUCGAUUUUAGUGGUUUcu ||:| :| ||| |||||| aaUAUAUUUUAAA--ACCAAAua 3 22 326 346 [dm3:3R:16963898-16963918:+] 0.7575 138 0 -7.43 -0.7602 MIMAT0000399 dme-miR-308 42509 CG5798 gaGUGUCAUAUUAGGACAC-UAa |:|| |||| |||||| || ccCGCA-UAUACGCCUGUGUAUg 2 21 277 298 [dm3:3R:16963849-16963870:+] 0.5326 130 0 -17.33 -0.1205 MIMAT0005470 dme-miR-957 42509 CG5798 cggaguCAAAACCUGCCAAAGu | || | ||||||| ----acGCUUCGCUCGGUUUCc 2 17 1 18 [dm3:3R:16963573-16963590:+] 0.4885 148 7 -14.84 -0.9418 MIMAT0005501 dme-miR-927 42509 CG5798 ccauuucgcauccuUAAGAUUu |||:||| uauuuugcaaauauAUUUUAAa 2 9 317 338 [dm3:3R:16963889-16963910:+] 0.6671 124 0 -4.09 -0.1230 MIMAT0005515 dme-miR-996 42509 CG5798 ucugcucguACUUUAGAUCAGu | |::||||||| uauagcuuuUAAGGUCUAGUCg 2 14 70 91 [dm3:3R:16963642-16963663:+] 0.4885 149 7 -16.69 -0.3243 MIMAT0005027 dme-miR-1014 42509 CG5798 gacGUUUACUUUUACUUAAAa :||| |||| | ||||| aaaUAAACGAAAUUCAAUUUc 2 19 342 362 [dm3:3R:16963914-16963934:+] 0.7575 138 0 -3.83 -0.1097

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp8 RAID00445586 dme-miR-9c-5p miRNA MIMAT0000392 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID00577896 dme-miR-279-3p miRNA MIMAT0000341 Usp8 mRNA 42509 Prediction 0.2381 Usp8 RAID00779599 dme-miR-283-5p miRNA MIMAT0000347 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID01105013 dme-miR-927-5p miRNA MIMAT0005501 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID01207174 dme-miR-286-3p miRNA MIMAT0000359 Usp8 mRNA 42509 Prediction 0.2381 Usp8 RAID01226751 dme-miR-9a-5p miRNA MIMAT0000114 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID01497124 dme-miR-958-3p miRNA MIMAT0005471 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID01529632 dme-miR-308-3p miRNA MIMAT0000399 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID01808149 dme-miR-79-3p miRNA MIMAT0000352 Usp8 mRNA 42509 Prediction 0.2202 Usp8 RAID02129316 dme-miR-1014-3p miRNA MIMAT0005027 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID02323642 dme-miR-957-3p miRNA MIMAT0005470 Usp8 mRNA 42509 Prediction 0.2202 Usp8 RAID02571047 dme-miR-277-3p miRNA MIMAT0000338 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID02987531 dme-miR-1013-3p miRNA MIMAT0005026 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID03109356 dme-miR-9b-5p miRNA MIMAT0000395 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID03520380 dme-miR-1001-5p miRNA MIMAT0005521 Usp8 mRNA 42509 Prediction 0.1828 Usp8 RAID03743945 dme-miR-8-3p miRNA MIMAT0000113 Usp8 mRNA 42509 Prediction 0.2202 Usp8 RAID03882032 dme-miR-996-3p miRNA MIMAT0005515 Usp8 mRNA 42509 Prediction 0.2381