DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 42749 EloA uggucAUGGA--CUACAUUAUGAGu || || || | |||||| cauuaUAGCUACAAUCUUAUACUCa 2 19 12 36 [dm3:3R:19080182-19080206:+] 0.4972 121 6 -12.00 -0.1366 MIMAT0000364 dme-miR-289 42749 EloA ucagcguccgaggUGAAU-UUAUAAAu | ||| :|||||| gcucauuuacauaAGUUAUGAUAUUUg 2 14 347 373 [dm3:3R:19080517-19080543:+] 0.4872 132 6 -8.86 -0.1427 MIMAT0000388 dme-miR-303 42749 EloA uggucaaaggacacuuUGGAUUu |||||| aaaccuauaugaaacuACCUAAa 2 8 539 561 [dm3:3R:19080709-19080731:+] 0.4447 120 6 -12.92 -0.1599 MIMAT0005500 dme-miR-984 42749 EloA uuuaaggUUGGCAUA-AAUGGAGu ||:: ||| ||||||: accaaaaAAUUCUAUAUUACCUUu 2 17 611 634 [dm3:3R:19080781-19080804:+] 0.4022 139 0 -11.68 -0.1946 MIMAT0005509 dme-miR-991 42749 EloA ugaaaGGUUUGAUGUUGAAAUu ::| :| |||||||| ugggaUUACCUUCCAACUUUAu 2 18 101 122 [dm3:3R:19080271-19080292:+] 0.4820 149 7 -9.02 -0.2275 MIMAT0011784 dme-miR-2279* 42749 EloA uuAAAGUGUGUGUCUAUAAAUu | | | ||| ||||||| ugUAUAAGUCAC-UAUAUUUAa 2 21 274 294 [dm3:3R:19080444-19080464:+] 0.5100 146 7 -7.43 -0.8462 MIMAT0011784 dme-miR-2279* 42749 EloA uuaAAGUGUGU---GU-CUAUAAAUu ||:|||:| :| |||||||: ucaUUUACAUAAGUUAUGAUAUUUGa 2 20 349 374 [dm3:3R:19080519-19080544:+] 0.4872 141 0 -14.12 -0.1285 MIMAT0011784 dme-miR-2279* 42749 EloA uuaaAGUGUG--UGUCUAUAAAUu |||| | ||| |||||| cugaUCACUCCAACA-UUAUUUAa 2 19 422 444 [dm3:3R:19080592-19080614:+] 0.4872 123 6 -10.17 -0.2055 MIMAT0011791 dme-miR-2283 42749 EloA uaacagcaUAAGUACUAUAAAag | |:||||||||| uuuacauaAGUUAUGAUAUUUga 3 16 352 374 [dm3:3R:19080522-19080544:+] 0.4872 143 0 -9.08 -0.1259 MIMAT0012215 dme-miR-2500 42749 EloA gacucCAGGUGUGU--GUUUUAGg || |::|:: ||||||| gggcuGUGCGUAUGUCCAAAAUCa 2 18 474 497 [dm3:3R:19080644-19080667:+] 0.4872 148 7 -13.66 -0.6604 MIMAT0000108 dme-miR-3 42749 EloA acUCUGUGUGA-AACGGGUCACu |||| : || | ||||||| cuAGACCUUCUACUUCCCAGUGc 2 21 164 186 [dm3:3R:19080334-19080356:+] 0.4820 155 7 -19.94 -0.1466 MIMAT0000114 dme-miR-9a 42749 EloA aguauGUCGAUCUA--UUGGUUUcu :| :|| || ||||||| aucgcUAAUUAAAUUCAACCAAAaa 3 19 594 618 [dm3:3R:19080764-19080788:+] 0.4022 133 0 -6.64 -0.1607 MIMAT0000335 dme-miR-219 42749 EloA guUCUUAACGCAAACCUGUUAGu | || ||: ||| |||||| auAUAAAUGUAUUUACACAAUCc 2 22 515 537 [dm3:3R:19080685-19080707:+] 0.4872 137 6 -7.09 -0.1435 MIMAT0000338 dme-miR-277 42749 EloA acaGCAUGGUCUAU-CACG-UAAAu |||| || ||: ||| |||| augCGUAGCAUAUGCAUGCUAUUUa 2 21 215 239 [dm3:3R:19080385-19080409:+] 0.4960 127 0 -14.21 -1.1147 MIMAT0000347 dme-miR-283 42749 EloA ucUUAAUG--GUCG--ACUAUAAAu | |||| ||: |||||||| ucAUUUACAUAAGUUAUGAUAUUUg 2 20 349 373 [dm3:3R:19080519-19080543:+] 0.4872 149 7 -11.48 -1.0586 MIMAT0000392 dme-miR-9c 42749 EloA agauGUCGAUCUUA--UGGUUUcu :| :|| | | |||||| ucgcUAAUUAAAUUCAACCAAAaa 3 19 595 618 [dm3:3R:19080765-19080788:+] 0.4022 125 0 -6.80 -0.1607 MIMAT0000395 dme-miR-9b 42749 EloA guauGUCGAUUUUAG-UGGUUUcu :| :|||| || |||||| ucgcUAAUUAAAUUCAACCAAAaa 3 20 595 618 [dm3:3R:19080765-19080788:+] 0.4022 142 0 -9.76 -0.1546 MIMAT0000396 dme-let-7 42749 EloA ugAUAUGUUGGAUGAUGGAgu ||||::| ||||||| ccUAUAUGA--AACUACCUaa 3 20 542 560 [dm3:3R:19080712-19080730:+] 0.4022 136 0 -14.90 -0.1726 MIMAT0000401 dme-miR-309 42749 EloA auccuguuUGAAAUGGGUCACg |||| ||||||| gaccuucuACUU--CCCAGUGc 2 15 167 186 [dm3:3R:19080337-19080356:+] 0.4820 147 7 -19.14 -0.1360 MIMAT0000410 dme-miR-318 42749 EloA acucuauuuguuucGGGUCACu ||||||| uagaccuucuacuuCCCAGUGc 2 9 165 186 [dm3:3R:19080335-19080356:+] 0.4820 140 7 -13.64 -0.1466 MIMAT0005474 dme-miR-960 42749 EloA cgauACGUUAGACCUUAUGAGu | |||||| |||||| uagcUACAAUCU--UAUACUCa 2 19 17 36 [dm3:3R:19080187-19080206:+] 0.4972 127 6 -18.50 -0.1217 MIMAT0005476 dme-miR-962 42749 EloA cugUCGUAGUUAAAGA---GAUGGAAua | || || |||| :|||||| ucaACCAAAAAAUUCUAUAUUACCUUu- 3 23 608 634 [dm3:3R:19080778-19080804:+] 0.4022 137 0 -10.45 -0.1875 MIMAT0005477 dme-miR-963 42749 EloA cuUUGUUGGACUAUAAAUGGAAca || ||:: ||| ||||||| caAAAAAUUCUAUA-UUACCUUu- 3 23 613 634 [dm3:3R:19080783-19080804:+] 0.4022 144 0 -9.56 -0.1946 MIMAT0005490 dme-miR-974 42749 EloA uuaUGAUGAAGAA--ACG-AGCGAa | |:: |||| ||| ||||| uaaAAUGUCUCUUAAUGCAUCGCUa 2 20 576 600 [dm3:3R:19080746-19080770:+] 0.4022 122 0 -14.15 -1.1143

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score EloA RAID00153115 dme-miR-318-3p miRNA MIMAT0000410 EloA mRNA 42749 Prediction 0.2202 EloA RAID00569955 dme-miR-9b-5p miRNA MIMAT0000395 EloA mRNA 42749 Prediction 0.1828 EloA RAID00587174 dme-miR-303-5p miRNA MIMAT0000388 EloA mRNA 42749 Prediction 0.1828 EloA RAID00866035 dme-miR-963-5p miRNA MIMAT0005477 EloA mRNA 42749 Prediction 0.1828 EloA RAID00881961 dme-mir-2a-2 miRNA MI0000118 EloA mRNA 42749 Prediction 0.1828 EloA RAID01125682 dme-miR-309-3p miRNA MIMAT0000401 EloA mRNA 42749 Prediction 0.2202 EloA RAID01684742 dme-miR-962-5p miRNA MIMAT0005476 EloA mRNA 42749 Prediction 0.1828 EloA RAID01730611 dme-miR-991-3p miRNA MIMAT0005509 EloA mRNA 42749 Prediction 0.1828 EloA RAID01956980 dme-miR-9c-5p miRNA MIMAT0000392 EloA mRNA 42749 Prediction 0.1828 EloA RAID02126883 dme-mir-2a-1 miRNA MI0000117 EloA mRNA 42749 Prediction 0.1828 EloA RAID02259341 dme-miR-283-5p miRNA MIMAT0000347 EloA mRNA 42749 Prediction 0.2202 EloA RAID02412196 dme-miR-13a-3p miRNA MIMAT0000118 EloA mRNA 42749 Prediction 0.1828 EloA RAID02456936 dme-miR-2c-3p miRNA MIMAT0000411 EloA mRNA 42749 Prediction 0.2202 EloA RAID02583312 dme-miR-11-3p miRNA MIMAT0000116 EloA mRNA 42749 Prediction 0.1828 EloA RAID02692234 dme-miR-219-5p miRNA MIMAT0000335 EloA mRNA 42749 Prediction 0.1828 EloA RAID02702254 dme-miR-9a-5p miRNA MIMAT0000114 EloA mRNA 42749 Prediction 0.1828 EloA RAID02796576 dme-let-7-5p miRNA MIMAT0000396 EloA mRNA 42749 Prediction 0.1828 EloA RAID03028504 dme-miR-308-3p miRNA MIMAT0000399 EloA mRNA 42749 Prediction 0.1828 EloA RAID03062611 dme-miR-3-3p miRNA MIMAT0000108 EloA mRNA 42749 Prediction 0.2202 EloA RAID03400568 dme-miR-960-5p miRNA MIMAT0005474 EloA mRNA 42749 Prediction 0.2381 EloA RAID03476929 dme-miR-974-5p miRNA MIMAT0005490 EloA mRNA 42749 Prediction 0.1828 EloA RAID04054907 dme-miR-277-3p miRNA MIMAT0000338 EloA mRNA 42749 Prediction 0.1828